RNA id: TU752968


Basic Information

Item Value
RNA id TU752968
length 302
lncRNA type intronic
GC content 0.47
exon number 2
gene id G661681
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 89414148 ~ 89414701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctctctctctctcgttataaCTCTCTGATCTCTGGAGGTTTGaacagcagtctctctctctccctctctctctctcgttatatcTCTCTGATCTCTGGAGGTTTGaacagcagtctctctctctccctctctctctctcgttataaCTCTCTGATCTCTGGAGGTTTGaacagcagtctctctctctccctctctctctctcgttatatcTCTCTGATCTCTGGAGGTTTGaacagcagtctctctctctccctctctctctctcgttataaCTCTCTGATCTCTGGAGGTTTGaacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU752964 lncRNA upstream 3431 89410224 ~ 89410717 (+) True G661677
TU752961 lncRNA upstream 12491 89401336 ~ 89401657 (+) True G661674
TU752956 lncRNA upstream 16597 89397241 ~ 89397551 (+) True G661669
TU752949 lncRNA upstream 19349 89393019 ~ 89394799 (+) True G661662
TU752939 lncRNA upstream 28094 89385818 ~ 89386054 (+) True G661653
TU752981 lncRNA downstream 41542 89456243 ~ 89456758 (+) True G661690
TU752983 lncRNA downstream 53541 89468242 ~ 89471391 (+) False G661692
TU753027 lncRNA downstream 123071 89537772 ~ 89538114 (+) True G661731
TU753035 lncRNA downstream 128357 89543058 ~ 89544309 (+) True G661737
TU753036 lncRNA downstream 131078 89545779 ~ 89547479 (+) True G661738
XM_036984353.1 mRNA upstream 298623 88981718 ~ 89115525 (+) False LOC110529064
XM_036984354.1 mRNA upstream 298623 88981719 ~ 89115525 (+) True LOC110529064
XR_005052693.1 mRNA upstream 358180 89054147 ~ 89055968 (+) False LOC118965329
XR_005052694.1 mRNA upstream 358180 89054147 ~ 89055968 (+) False LOC118965329
XM_036984355.1 mRNA upstream 435554 88974702 ~ 88978594 (+) False LOC118965328
XM_036984359.1 mRNA downstream 10772 89425473 ~ 89474883 (+) True ptpdc1a
XM_021611208.2 mRNA downstream 65136 89479837 ~ 89492439 (+) True LOC110529066
XM_036984364.1 mRNA downstream 681321 90096022 ~ 90162648 (+) True iqsec1b
XM_036984368.1 mRNA downstream 875400 90290101 ~ 90409035 (+) False pparg
XM_036984365.1 mRNA downstream 875778 90290479 ~ 90409035 (+) False pparg
TU752808 other upstream 157724 89255760 ~ 89256424 (+) True G661541
TU752742 other upstream 232111 89180814 ~ 89182037 (+) True G661491
TU752740 other upstream 233944 89179293 ~ 89180204 (+) True G661489
TU752338 other upstream 433939 88975938 ~ 88980209 (+) False LOC118965328
TU752344 other upstream 438318 88972984 ~ 88975830 (+) True G661172
TU752985 other downstream 53283 89467984 ~ 89471391 (+) False G661692
TU752990 other downstream 55128 89469829 ~ 89470119 (+) True G661696
TU752986 other downstream 55852 89470553 ~ 89471391 (+) True G661692
TU753378 other downstream 584576 89999277 ~ 89999911 (+) True G662026
TU753599 other downstream 1104184 90518885 ~ 90562967 (+) True LOC110528704

Expression Profile