RNA id: TU753077



Basic Information


Item Value
RNA id TU753077
length 1480
RNA type TUCP
GC content 0.60
exon number 2
gene id G661773
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 89458151 ~ 89459700 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCACACTGAGACCTTGTAGTGGAGATCTTCATCATTCAGGCCCAAAGCCAGAGCTCTGGCCACCAGCAGACGTCTGGCTTCCAGGGACAGCTCAGCATACAGGGTGATGACAGGGACCTCTGTcagcctctccctgtcctctctgtccttccgttcctctctgtcctctctttctccagccttccccctcactctttcctctctgtctccagcccTGTCTACCCCACACAcagactcctctcctcctgtaaGGCTCATCACAGGCATATCTCCTCTCCACGGCCTCCCCTCTGACAGCTCTTCTCCTGAGGGCTTGGACAGACTACCCCCAAACCCAAAGGACAGACTTCGCTGGCCCTCGCAGAGCTGCTTCCGTCTCTGGAAGAGAGGAGACATGTTCTTCTGGGTGTGGTGATCACTCTCCTTAGAACTCCTTTCCTgtcctcctcgcctctcctccctTGTCTGCTCTCCCATGGAGAAGGGGTGGTGCTGTGGAGGGAGGCTAGGGGATGTGGGGGGCTCCCAGGCTGTGGCTAGCTGGTGATGGGTCAGAGGATTGCCGCAAGGGATGCTCCAGATGTGGTTCTGGTTCTGCTCCTGGTCTGGGTCTCGTCTGGGGTCTAGCTTATACAAGGCTGAGTCACTGTAACTCAGCAAGCGTTTCCCCGGATGCAGAGGCTTCAGGAGGGAGGCAGCCACCCCATTCTGCCGCTGCCACAGAGGGTCCAGCTCCTTGTCACTGGACAGAACCGGGTCGTGGGCCAGGGCTGGGCTGAGAGGGGGCTCTAAGAGTAACGATGGTTCCTGGAGTAGTGCTAGGTTTGGAGTGAGAGGTCGTTCCATGTGTAGTGTGTGGGTTAGGGCTGTCTGAGGGCGGGGACAAGGCTGGGTTAGGGCTGTCTCAGGGCGGGGACAAGGCTGGGTTAGGGCTGTCTCAGGGTGGGGACAAGGCTGGGTTAGGGCTGTCTCAGGGTGGGGACAAGGCTGGGTTAGGGCTGTCTCAGGGCGGGGACAAGGCTGGGTTAGGGCTGTCTCAGGGCGGGGACAAGGCTGGGTTAGGGCTGTCTCAGGGCGGGGACAAGGCTGGGTTAGGGCTGTCTCAGGGCAGGGACAAGGCTGGGTTAGGGCTGTCTCAGGGTGGGGACAAGGCTGGGTTAGGGCTGTCTCAGGGCGGGGACAAGGCTGGGTTAGGGCTGTCTCGTGGCGGGGACAAGGCAGGCAGGGTGAAGGCACAGGGATGCccttccctctcatctccttccccAGCAGCTGGATGGCCTGCTGGGACACTGTCTTCTCCACCTCCGCCGTCAGGTCTGGAACCTCCACCAccgcctcctccaccaccaccttcaatcacatcatcatcatcatcaacagtcAGGTCTGGAACCTCCACCAccgcctcctccaccaccaccttcaatcacatcatcatcatcatcatcatcaatagtcaggtctggaacctccacc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU753061 lncRNA downstream 28511 89429332 ~ 89429640 (-) True G661760
TU753059 lncRNA downstream 29953 89427903 ~ 89428198 (-) True G661758
TU753058 lncRNA downstream 30370 89427545 ~ 89427781 (-) True G661757
TU753057 lncRNA downstream 32466 89425413 ~ 89425685 (-) True G661756
TU753054 lncRNA downstream 41558 89416381 ~ 89416593 (-) True G661754
TU753079 lncRNA upstream 2525 89462225 ~ 89471122 (-) True G661775
TU753089 lncRNA upstream 17016 89476716 ~ 89478355 (-) True G661780
TU753157 lncRNA upstream 116144 89575844 ~ 89576055 (-) True G661831
TU753160 lncRNA upstream 118878 89578578 ~ 89579330 (-) True G661834
TU753162 lncRNA upstream 119721 89579421 ~ 89579886 (-) True G661836
XM_021610827.2 mRNA downstream 65912 89388793 ~ 89392239 (-) True LOC110528694
XM_036984347.1 mRNA downstream 678681 88777751 ~ 88779470 (-) True pdcd2l
XM_021610821.2 mRNA downstream 815602 88585172 ~ 88642549 (-) True LOC110528689
XM_036984346.1 mRNA downstream 1004061 88421430 ~ 88454090 (-) True dyrk3
XM_036984344.1 mRNA downstream 1004062 88421430 ~ 88454089 (-) False dyrk3
XM_021610831.2 mRNA upstream 128397 89588097 ~ 89672181 (-) True LOC110528698
XM_036984360.1 mRNA upstream 239912 89699612 ~ 89827294 (-) True LOC110528697
XM_036984361.1 mRNA upstream 426872 89886572 ~ 89946188 (-) False hdac11
XM_036984363.1 mRNA upstream 426872 89886572 ~ 89946188 (-) True hdac11
XR_005052727.1 mRNA upstream 799953 90259653 ~ 90259806 (-) True LOC118965398
TU752543 other downstream 359573 89097047 ~ 89098578 (-) False G661335
TU752665 other downstream 396670 89053076 ~ 89061481 (-) True G661426
TU752275 other downstream 698213 88759493 ~ 88759938 (-) True G661128
TU752038 other downstream 1198746 88253063 ~ 88259405 (-) True LOC110528687
TU750588 other downstream 2164396 87284901 ~ 87293755 (-) True LOC110528667
TU753739 other upstream 217389 89677089 ~ 89681607 (-) True G662321
TU753944 other upstream 702438 90162138 ~ 90162948 (-) False G662500
TU754104 other upstream 992587 90452287 ~ 90453260 (-) False G662629
TU754355 other upstream 1282892 90742592 ~ 90764290 (-) True G662819

Expression Profile


TU753077 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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TU753077 Expression in each Bioproject

Bar chart with 15 bars.
TU753077 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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