RNA id: TU752990


Basic Information

Item Value
RNA id TU752990
length 249
RNA type TUCP
GC content 0.44
exon number 2
gene id G661696
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 89469829 ~ 89470119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttaatatgggttacagcgtggttgatatgggttacagcgtggttaatatggggtacagcgtggttgatatgggttacagcgtggttgatatgggttacaacgtggttgatatgggttacagcgtggttaatatgggttgtcacgtggttaatatgggttacagcgtggttaatatgggttgtcacgtggttaatatggggtacAGTGTGGTTGATATGGGTTTCAGCGTGATTAATATGGGTTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU752981 lncRNA upstream 13071 89456243 ~ 89456758 (+) True G661690
TU752968 lncRNA upstream 55128 89414148 ~ 89414701 (+) True G661681
TU752964 lncRNA upstream 59112 89410224 ~ 89410717 (+) True G661677
TU752961 lncRNA upstream 68172 89401336 ~ 89401657 (+) True G661674
TU752956 lncRNA upstream 72278 89397241 ~ 89397551 (+) True G661669
TU753027 lncRNA downstream 67653 89537772 ~ 89538114 (+) True G661731
TU753035 lncRNA downstream 72939 89543058 ~ 89544309 (+) True G661737
TU753036 lncRNA downstream 75660 89545779 ~ 89547479 (+) True G661738
TU753153 lncRNA downstream 100480 89570599 ~ 89571671 (+) True G661827
TU753161 lncRNA downstream 109299 89579418 ~ 89579886 (+) True G661835
XM_036984353.1 mRNA upstream 354304 88981718 ~ 89115525 (+) False LOC110529064
XM_036984354.1 mRNA upstream 354304 88981719 ~ 89115525 (+) True LOC110529064
XR_005052693.1 mRNA upstream 413861 89054147 ~ 89055968 (+) False LOC118965329
XR_005052694.1 mRNA upstream 413861 89054147 ~ 89055968 (+) False LOC118965329
XM_036984355.1 mRNA upstream 491235 88974702 ~ 88978594 (+) False LOC118965328
XM_021611208.2 mRNA downstream 9718 89479837 ~ 89492439 (+) True LOC110529066
XM_036984364.1 mRNA downstream 625903 90096022 ~ 90162648 (+) True iqsec1b
XM_036984368.1 mRNA downstream 819982 90290101 ~ 90409035 (+) False pparg
XM_036984365.1 mRNA downstream 820360 90290479 ~ 90409035 (+) False pparg
XM_036984366.1 mRNA downstream 820362 90290481 ~ 90409035 (+) True pparg
TU752808 other upstream 213405 89255760 ~ 89256424 (+) True G661541
TU752742 other upstream 287792 89180814 ~ 89182037 (+) True G661491
TU752740 other upstream 289625 89179293 ~ 89180204 (+) True G661489
TU752338 other upstream 489620 88975938 ~ 88980209 (+) False LOC118965328
TU752344 other upstream 493999 88972984 ~ 88975830 (+) True G661172
TU752986 other downstream 434 89470553 ~ 89471391 (+) True G661692
TU753378 other downstream 529158 89999277 ~ 89999911 (+) True G662026
TU753599 other downstream 1048766 90518885 ~ 90562967 (+) True LOC110528704
TU754387 other downstream 1341817 90811936 ~ 90819035 (+) True cfap92

Expression Profile