RNA id: TU753036


Basic Information

Item Value
RNA id TU753036
length 271
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G661738
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 89545779 ~ 89547479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgctaactagacagtggATCCAGcaggaaggaagttgctaactagacagtgtatccagtaggaaggaagttgctaactagacagtgtatccagtaggaaggaagttgctaactagacagtgtatccaataggaaggaagttgctaactagacagtgtatccaataggaaggaagttgctaactagacagtgtatccagtaggaaggaagttgctaactagacagtgtatccagtaggaaggaagttgctaactagacagtgtatccaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU753035 lncRNA upstream 1470 89543058 ~ 89544309 (+) True G661737
TU753027 lncRNA upstream 7665 89537772 ~ 89538114 (+) True G661731
TU752983 lncRNA upstream 74388 89468242 ~ 89471391 (+) False G661692
TU752981 lncRNA upstream 89021 89456243 ~ 89456758 (+) True G661690
TU752968 lncRNA upstream 131078 89414148 ~ 89414701 (+) True G661681
TU753153 lncRNA downstream 23120 89570599 ~ 89571671 (+) True G661827
TU753161 lncRNA downstream 31939 89579418 ~ 89579886 (+) True G661835
TU753168 lncRNA downstream 39606 89587085 ~ 89589877 (+) True G661842
TU753184 lncRNA downstream 58843 89606322 ~ 89612356 (+) True G661851
TU753189 lncRNA downstream 97337 89644816 ~ 89645029 (+) True G661856
XM_021611208.2 mRNA upstream 53340 89479837 ~ 89492439 (+) True LOC110529066
XM_036984357.1 mRNA upstream 70896 89398875 ~ 89474883 (+) False ptpdc1a
XM_036984359.1 mRNA upstream 70896 89425473 ~ 89474883 (+) True ptpdc1a
XM_036984358.1 mRNA upstream 71810 89398875 ~ 89473969 (+) False ptpdc1a
XR_005052694.1 mRNA upstream 489811 89054147 ~ 89055968 (+) False LOC118965329
XM_036984364.1 mRNA downstream 548543 90096022 ~ 90162648 (+) True iqsec1b
XM_036984368.1 mRNA downstream 742622 90290101 ~ 90409035 (+) False pparg
XM_036984365.1 mRNA downstream 743000 90290479 ~ 90409035 (+) False pparg
XM_036984366.1 mRNA downstream 743002 90290481 ~ 90409035 (+) True pparg
XM_036984374.1 mRNA downstream 866240 90413719 ~ 90424738 (+) False tsen2
TU752985 other upstream 74388 89467984 ~ 89471391 (+) False G661692
TU752986 other upstream 74388 89470553 ~ 89471391 (+) True G661692
TU752990 other upstream 75660 89469829 ~ 89470119 (+) True G661696
TU752808 other upstream 289355 89255760 ~ 89256424 (+) True G661541
TU752742 other upstream 363742 89180814 ~ 89182037 (+) True G661491
TU753378 other downstream 451798 89999277 ~ 89999911 (+) True G662026
TU753599 other downstream 971406 90518885 ~ 90562967 (+) True LOC110528704
TU754387 other downstream 1264457 90811936 ~ 90819035 (+) True cfap92

Expression Profile