RNA id: TU753161


Basic Information

Item Value
RNA id TU753161
length 469
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G661835
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 89579418 ~ 89579886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatagagtccagtcagtgtgtgggtagagtccagtcagtgtgtgggtagagtccagtcagtgtgtgggtagagtccagtcagtgtggatagagtccagtcagtgtggatagagtctagtcagtgtgtgggtagagtccagtcagtgtgggtagagtccagtcagtgtgcgggtagagtccagtcagtgtgcgggtagaatccagtcagtgtgtgggtagagtccagtcagtgtgtgggtagagtccagtcagtgtgtgggtagagtccagtcagtgtgggtagagtccagtcagtgtgtgggtagagtccagtcagtgtgtgggtagagtccagtcagtgtgtggctagagtccagtcagtgtgtgggtagagtccagtcagtgtgggtagagtccagtcagtgtgtgggtagagtccagtcagtgtgtgggtagagtccagtcagtgtgtgggtagagtccagtcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU753153 lncRNA upstream 7747 89570599 ~ 89571671 (+) True G661827
TU753036 lncRNA upstream 31939 89545779 ~ 89547479 (+) True G661738
TU753035 lncRNA upstream 35109 89543058 ~ 89544309 (+) True G661737
TU753027 lncRNA upstream 41304 89537772 ~ 89538114 (+) True G661731
TU752983 lncRNA upstream 108027 89468242 ~ 89471391 (+) False G661692
TU753168 lncRNA downstream 7199 89587085 ~ 89589877 (+) True G661842
TU753184 lncRNA downstream 26436 89606322 ~ 89612356 (+) True G661851
TU753189 lncRNA downstream 64930 89644816 ~ 89645029 (+) True G661856
TU753193 lncRNA downstream 76795 89656681 ~ 89656988 (+) True G661860
TU753202 lncRNA downstream 92978 89672864 ~ 89676642 (+) False G661867
XM_021611208.2 mRNA upstream 86979 89479837 ~ 89492439 (+) True LOC110529066
XM_036984357.1 mRNA upstream 104535 89398875 ~ 89474883 (+) False ptpdc1a
XM_036984359.1 mRNA upstream 104535 89425473 ~ 89474883 (+) True ptpdc1a
XM_036984358.1 mRNA upstream 105449 89398875 ~ 89473969 (+) False ptpdc1a
XR_005052694.1 mRNA upstream 523450 89054147 ~ 89055968 (+) False LOC118965329
XM_036984364.1 mRNA downstream 516136 90096022 ~ 90162648 (+) True iqsec1b
XM_036984368.1 mRNA downstream 710215 90290101 ~ 90409035 (+) False pparg
XM_036984365.1 mRNA downstream 710593 90290479 ~ 90409035 (+) False pparg
XM_036984366.1 mRNA downstream 710595 90290481 ~ 90409035 (+) True pparg
XM_036984374.1 mRNA downstream 833833 90413719 ~ 90424738 (+) False tsen2
TU752985 other upstream 108027 89467984 ~ 89471391 (+) False G661692
TU752986 other upstream 108027 89470553 ~ 89471391 (+) True G661692
TU752990 other upstream 109299 89469829 ~ 89470119 (+) True G661696
TU752808 other upstream 322994 89255760 ~ 89256424 (+) True G661541
TU752742 other upstream 397381 89180814 ~ 89182037 (+) True G661491
TU753378 other downstream 419391 89999277 ~ 89999911 (+) True G662026
TU753599 other downstream 938999 90518885 ~ 90562967 (+) True LOC110528704
TU754387 other downstream 1232050 90811936 ~ 90819035 (+) True cfap92

Expression Profile