RNA id: TU754270


Basic Information

Item Value
RNA id TU754270
length 304
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G662762
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 90654477 ~ 90654780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatttctagggtcaattttagatcagccattcctgaaccagAGACCAGAAACAGGGCTACCTGGGagcaataacaaaaaaaatggtctattgattctgtatcctcacaacaaaatatGCAGAGCTTcaatgattttatgccccaaatattcaacattttgttggtggcaagaattctatgtaataattttagctgaaaagcacaaagtcttAAATCTTgcgttttatatatcaactcatactcATGGTACAACTGTGCCAAACAGATTgcaaatagttgggaagagatttttgatgtaccgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU754265 lncRNA upstream 3809 90650442 ~ 90650668 (+) True G662757
TU753684 lncRNA upstream 5769 90648494 ~ 90648708 (+) True G662279
TU753649 lncRNA upstream 9046 90573329 ~ 90645431 (+) False G662249
TU753650 lncRNA upstream 9046 90604425 ~ 90645431 (+) True G662249
TU753653 lncRNA upstream 74548 90577225 ~ 90579929 (+) True G662252
TU754279 lncRNA downstream 2754 90657534 ~ 90657734 (+) True G662771
TU754282 lncRNA downstream 4581 90659361 ~ 90659720 (+) True G662774
TU754294 lncRNA downstream 17616 90672396 ~ 90675560 (+) False G662782
TU754290 lncRNA downstream 20139 90674919 ~ 90676874 (+) False G662782
TU754296 lncRNA downstream 20139 90674919 ~ 90675560 (+) True G662782
XM_036984380.1 mRNA upstream 26924 90597013 ~ 90627553 (+) True zgc:77375
XM_036984377.1 mRNA upstream 91503 90518807 ~ 90562974 (+) False LOC110528704
XM_036984378.1 mRNA upstream 91503 90518933 ~ 90562974 (+) False LOC110528704
XM_036984376.1 mRNA upstream 91503 90519010 ~ 90562974 (+) False LOC110528704
XM_021610838.2 mRNA upstream 147608 90484022 ~ 90506869 (+) True LOC110528705
XM_036984381.1 mRNA downstream 85884 90740664 ~ 90885403 (+) False cfap92
TU753599 other upstream 91510 90518885 ~ 90562967 (+) True LOC110528704
TU753378 other upstream 654566 89999277 ~ 89999911 (+) True G662026
TU752985 other upstream 1183086 89467984 ~ 89471391 (+) False G661692
TU754387 other downstream 157156 90811936 ~ 90819035 (+) True cfap92

Expression Profile