RNA id: XM_021611478.2


Basic Information

Item Value
RNA id XM_021611478.2
length 3735
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110529344
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 10080837 ~ 10086410 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAATCACATAGGAAGACGCGCGAGACCGTGCGAGAATTTCTCTGTGGCAACAAATAGACTACGTACGAAATATAAACctttatttaatatatatttCGCAAATAGGTGCAGCTCAACGTCCAGAGGGAGTTTGGCTTCTTGTGCGACTGCACAGTCGCCATTGGCAACGTGTACTTCAAGGCCCACCGGGCCGTGCTTGCTGCCTTCTCCAACTACTTCAAGATGATCTTCATTCATCAGTCAAGTGAGTGCATTAAGATCCAGCCCACGGACATCCAGCCAGACGTTTTCAGCTACCTGCTCCACATCATGTACACGGGCATGGGCCCCAAGCAGCCGGTGGACCAGGGCCGCCTGCAGGAGGGCATCAAGTTCCTCCATGCCTACCAGCTGTGTAAGCCTGGTGAGGGTGGACCCGATGCCGCCACCGCCGACCTTGTCCGCATGTCCAACCTGTACGGCATTCAGATTTCATCACAGTTAGCAAACAAGGAGGGTACTGGGGTCCCTAAAGGTAGTGCAGGTGCCCGAGGAGGGGGCGGCCCCGAGGACGGGCGTTCGTCCACTCGGGCAGGCCGTTCACACACAACCCAGTTTTCGATGACTGTGGGGATGGAGGGCGTCCCCTCATCAGGCTGTCAGCCCTTCTCTGGTCTCCTCCGTGGTGTCTCCTCTGTGGCTTCCGGCGACGACTCAGACATCTCAACGCGCATCAAGCAGGAGAcggtggaggaagagggagaggagtgccATCCGGTGCCAGGCGGGGGAGGGTCCCCGACGTCTCCTTTGGCCCAGGGCGGCAACCCCTGCCAGGGCCTCTTGTTCAAGGATGGTCCCCATGCGCTGCTGTGCCCCCGGTGCGGCGAGCGCTGCTCGTCCCCCGAGGGGCTCCGCGAGCACCTGTTCAGCCACGCCACCTGCGCCCTGGATCCCAGCGGACTAATGGAGGGCCTCTCCCAGGGCGGGGGAGGGGACACAGTGGGCACTGAggaccagcagcagcagcggggGTGCCCCCAGGATCAGCAGGATGCAGGCTACCTGGAGGAGGCCCTGAGACAGAGCCAAGCCCTAGCTGACGAGCTAGCCACCGAGCTAAGGCGGAGCAGGGGGGGTATAGCCGGTGGCACCAGTACAccccccaccgccaccatgacCACCTCCACTACCAGTCACACACGAAAGCGCAAGATCGCCTGCTCCGTGTGCAGCCTGCGTTTCACCCAGAAGAGCCAGCTGCAGGAGCACATGTACACGCACACGGGCAAGCCGTCACGCTACCATCGCTACAGCCGCCTCTGCAGCCAGCTCATCCACGCTTCTGGGCACTTCTGCGAGGGGCCACCGGAGGGCGGCGGGGTGGTGGCAAGCACTACAGTAGCGCTGGCGGAGGAGGCAAACAGGGAAGCTCAGGACAATGGCAGCTCCTGCTATTCGCTAGACTCTGAGATCTCGCAGGAGAGCGTGGACAACATCGCTGTGGAATGAAAGCGAAAACAAACTGTAGAAATTAAAGAAGTACATCAACTCCCATTTTACATAGGTGTTGGTGTTGGAGTCACCACCGAATTTGATAACTCTTGTTTGTGTGATTATGCAGTAGCCTCTCTTTTTTTTGGAGTGTTTTCTTAGAAAACTGGATTAACAATGGTAATTGGTAAGAACTATGTACTTATACTTGTCACAAGGTAATTGACATAAGTTATACCCTTACAGTTACCCGGGGATAACAGCTATGTAAtaagaagtgttttgtgaatACATCTTCATTCTCCCATCTGCACTCACCAGAGACTGTGCACAGCTGGTTCGTCTTCATTAGGGCACGACAATAGTAAAACGTTTTTGCAATGGAAAACGAAACTTAGTGATTCTTATTGGACGATTCCAGATAGTGCCTCCTGTTTCACCCTGTTTGAGTTTGTTTTCTTCAGTTTGATTCCGACTGAACATGACCCTGTTTCAGTTGCGTTCCTTACCTTTTGTCATTATCTTTCCACTGATCCGGTTGTATCCTGTCCTTATGTCAATACCGTCATCTCTCTGTCGGTTAGATGAAACCCTGTGATGTGAATCCAGTGTAAAGTGTATGTTATTTTATTCAGTGAACGgttgaatagaatagaacatggtATTTTAAAGAGgaatgtgttgtctctctctcagttgtCATATTTTACCAGCTGGTATATTGATTGGAAATGTATCTGCATTGTTTTCTGACTCTCCAGAAAATAACTCTCAGTCTCAGAAATAAGTAGCTGTTGAAATGGAGCCTGGCATGTTGTTATGGAGGGTTGTCAGGGTTACAGGAATTTGCAAGGGACAAATTCTTACGCCCACAATGTTGCAGTACACAATTGATGTATGGTAGTACATCATTACACATATTGGAACATTTCAATATTTCCCTCCCAAATCATGAGCAGGGGCTTGGTGttcctctttttctttctttaatCTCaacaaactagcactaactagcactTACAAACGAGCACAGTATACCTAAACTTGATAATTAGCAGAGAATTTGCTTGGCAAAGCTTCATTCACCTTCAAGAAGTGTGTACTAACTATGAAAATGGACGTGTATGCAAAAGAAGACAAAGCCACAAGTGTCATCCCAAAACCTTTAAAGCTGGAAAACCTGGGGATGTATTCAAGCGTCAcaggagagctgatctaggatcaggtccccccgtCTTATTCATTCTAGATCTGAAAGGCAAAACGGATTCTAAATCAGCACTCCTCTGAGATGTTTAACACATACGACCCTTAGCAGTGTTTAACTACAGAGGAAACCTGTTGAATGTACTTTATCCTGTGCtgccgagtggcacagcggtctaaggcactgcaagaGGTGTcccagtccctggttcaaatcctggctgtatcacatccagccatgattgggagtcccatagggtggcgcacaattggcccagcgttatccaggtttggctggggtaggccgtcattgtaaataagaatttgtccttaactgacttgcctagttaaatataatgTAAATTAAATCCTTGACAACACTAAGAGGAAGGACTTATTTTAGCTCATAACAGGCAGAAGTAGCCTGACGACTCACACTAAGTTCTTCCGCTGCTCTGTCGTTAGCTACATACTTCAatctgagactgccatcattgaaAGACGGAGGGTTTTGGTGACGAAGGgcattgtacaaaacaaagtgtTCGCCTTTGGTAAAGGGTGGAGGGttggggaggtactcagatccagactcatggCGGAGAAAACAACCAAAGTCCGTGGGCGTGGCGTAGCGTTTGGCCAGAGCAaagagtctgggtagccaggcaagagTAGAAGTGACTAAAAGAGATACTCTGAACTTAAATAGTTCTCTAAAGCTTTATTATTGTGCGATTGTAGATTCATATTTGACGGATATGTGGCAATGGCTATCAGAGTGTGTAGAAGAATGCATCTAGTAATGTTGAACCAGGAACCTGTATGTACTGCGATAGACAGTATAAACCTAGGATTATCAAATTGACCTTTCTGGGTTTGTTTCCATTCTATCCTGTTGGTGTGTGTGACCTCTGGTATGTTTCAGTTGGCTACTCTTCTATGGCTTTTCCACTTTGTCATACACTTTGTCGTGGTTTCATGTTTTCTTTAATCTGTGTCACTTTTCCATACATGGAAAAGGTtttgtaaataaatatattttgtaacaGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU765339 lncRNA downstream 52387 10027898 ~ 10028450 (-) True G671823
TU765215 lncRNA downstream 67814 9971682 ~ 10013023 (-) False kif26aa
TU765371 lncRNA upstream 6449 10092852 ~ 10096091 (-) True G671853
TU765318 lncRNA upstream 28687 10115090 ~ 10121902 (-) False G671820
TU765322 lncRNA upstream 28687 10115090 ~ 10119132 (-) False G671820
TU765327 lncRNA upstream 28687 10115090 ~ 10119132 (-) False G671820
TU765328 lncRNA upstream 28687 10115090 ~ 10121902 (-) False G671820
XM_036984711.1 mRNA downstream 87385 9825982 ~ 9993452 (-) False kif26aa
XM_036984712.1 mRNA downstream 87385 9825982 ~ 9993452 (-) False kif26aa
XM_036984713.1 mRNA downstream 196719 9825982 ~ 9884118 (-) False kif26aa
XM_036986822.1 mRNA downstream 289768 9774005 ~ 9791069 (-) True LOC118965597
XM_021611467.2 mRNA downstream 430757 9644525 ~ 9650080 (-) True LOC110529336
XM_036984725.1 mRNA upstream 54266 10140669 ~ 10148583 (-) True myh6
XM_021611485.2 mRNA upstream 66392 10152795 ~ 10186202 (-) False LOC110529348
XM_021611484.2 mRNA upstream 66392 10152795 ~ 10191112 (-) True LOC110529348
XM_036984727.1 mRNA upstream 108447 10194850 ~ 10212507 (-) False LOC110529349
XM_036984726.1 mRNA upstream 108447 10194850 ~ 10212544 (-) False LOC110529349
TU765218 other downstream 108025 9971682 ~ 9972812 (-) False kif26aa
TU765219 other downstream 108025 9971682 ~ 9972812 (-) False kif26aa
TU764524 other downstream 732958 9346384 ~ 9347879 (-) True G671122
TU764280 other downstream 815744 9263850 ~ 9265093 (-) True G670905
TU764088 other downstream 1119106 8956093 ~ 8961731 (-) True G670733
TU765319 other upstream 28687 10115090 ~ 10121973 (-) False G671820
TU765324 other upstream 28687 10115090 ~ 10121902 (-) False G671820
TU765333 other upstream 28687 10115090 ~ 10121973 (-) False G671820
TU766004 other upstream 651821 10738224 ~ 10738686 (-) True G672436
TU766687 other upstream 1258070 11344473 ~ 11344782 (-) True G673053

Expression Profile