RNA id: XM_021611487.2


Basic Information

Item Value
RNA id XM_021611487.2
length 2163
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110529351
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 10218620 ~ 10232963 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggggaaggGTGGAGTCAAAGAGGGAGCCCCGGAGAAAGTAGGAGGAAAtgacagagagaagggaaagcagggcagagggagaaagagaggaggccatagagatagagagagatacagagggggtTTGGAAGTAGGAATACACAGATGAGAGAGCATAAGAGGAAGCCAAACAGACAgcagtgcagacagacagacagacatcattgcagacagacagacatcattgcagacagacagacatcattgcagacagacagacagacagacagccagacagacagacagacagacagacagaggcatgtCCACCCAACCGGGTCCCCAGCACAGGGTCTTGTTCCAAACCCCAGGTGAGGAGAAGGCGGAAGAGGAGCCTCCTCAACGCAGACTGGGAAAACTCACGGTCAAGTACAACCGCAAGGACCTGCAAAAGAGGCTGGACATCGAGGAGTGGATTGACGGGCAGCTGCATCTCCTGTTCGACTGTGAGGAGGAGGATATTCCAGAGTTAGAAATTGACATGGATGAGTTGCTGGATCTATCAGACGCAGAACAGAGAGCAAAGCTACATGACCTTCTTCAAGACTGTGACAAGCCCAAAGAGGACTTCATCGACGGCTTGCTGTATCGTATGAAGGGACTTCGCAAGATGTCCCTGAAAAAATGAACAAAAGTTGGACCATGTGAAATGAGACACCATTGTCTCTCACCTGTAGCTGTGGATGTGTGTACAGTGACAGTCCTCATGTATCTAGATATATCCTTATGTATCCACAATCTGCACTATCAGTGTCTATATTAGTGGTTGGCAGCACTTGTCAAAGAGGGTCCCCATGGCCAGTCCGTCCTGACCTTATATTATTAGGACCATTTGATACCATATATGTCTTACTCACATAAGCCTGGTGGGTCTTCCAATGGGGCATCtgtgtaaaactgagtttaaatatgaCGTAATATAGCATAGAGATGTCCTACTAGATTCAAACACCTCTTGGTATCAGTTGCCTCTGAAGTAGAATGAGAGATCCAGTCTAGTGTTGATGGATTATCCAGTCTATCGTTTATGTAGATGTTTTTCACTGTTATGTTACAGAATGGTTCACCAATTCACCATGGCCTGGTTTGTTATGTTCTTCGGTGTTAATGGACACTTCTGGCATTTTGAATAATCAGATCACAGCTTATGTTGacattcttttttattttttctgaattttttctgaaatgttttctctgatgaatcccctgcTATGACTAGCCCAAGAATGTACTGTCGTgactttggctatgccggattaagtaaTATGATATGCTATTCTATATTAATATcgcctgattgagctaatcatgtaaatgtaattaactagagagtcaggcaccacaaaataatatttatagagctgttatcttccgaataaactcttaaagacctagtaatattttacatcaatagcagtcaacattaatcatcaccttaattcagtctcatctgaaagttgtagaTTCTTagttatctgcatgaaccctggctaacaatttgaatcagcaatacaaaattgggtttaattatttatttactaaatacctaactaatcacacagaattacacatacacacaattaatcataacttgattacaaattacgtcataaaggaaaacgtccctagcgggcggaacagtcTTTATATAGAAAGGGAGAAAAGggttgtgtttcatagtttacaacctctgtctcttcacgtgggcaggcagaatctctatgttaaccaagagttttgcaaatgtaacctcagtagggtagagagaggaaaaagggttGGACTGTCATAAACCAATcccccaggccaatgtcatgacagtACTGTAAATATGGTTACTAACACTTTTGTTTATCTTAAAGTATTGTTTTAAAAGAGGCAGTGCTCTCATTAACTGTTACATCGGAATTTCAAATGTGATCTCCAATTGAAAATATGTGTACTGTGATGTTACCTATGATATTCTGGAAAATATCACCTAAAACAAATTCACTTCAATCCATAAAAGGGCAGTTAGGCATCACAGAATGTCGACGAGCCTTGGATCCGCTAAAGATCCCAATGGGGGGGGATCGAAACTTTTTCTCTTTGTGAATTTCAATAAATCAATGGAAGCATA

Function

GO:

id name namespace
GO:0042325 regulation of phosphorylation biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU765402 lncRNA downstream 66641 10151257 ~ 10151979 (-) True G671879
TU765396 lncRNA downstream 81098 10137298 ~ 10137522 (-) True G671874
TU765395 lncRNA downstream 81460 10136710 ~ 10137160 (-) True G671873
TU765394 lncRNA downstream 83325 10134788 ~ 10135295 (-) True G671872
TU765393 lncRNA downstream 84836 10133374 ~ 10133784 (-) True G671871
TU765450 lncRNA upstream 13217 10246180 ~ 10246388 (-) True G671925
TU765452 lncRNA upstream 21740 10254703 ~ 10254927 (-) True G671927
TU765463 lncRNA upstream 33636 10266599 ~ 10267809 (-) True G671938
TU765667 lncRNA upstream 57298 10290261 ~ 10290472 (-) True G672120
TU765669 lncRNA upstream 61550 10294513 ~ 10294712 (-) True G672122
XM_036984726.1 mRNA downstream 6076 10194850 ~ 10212544 (-) False LOC110529349
XM_036984728.1 mRNA downstream 6076 10194850 ~ 10212544 (-) True LOC110529349
XM_036984727.1 mRNA downstream 6113 10194850 ~ 10212507 (-) False LOC110529349
XM_021611484.2 mRNA downstream 27508 10152795 ~ 10191112 (-) True LOC110529348
XM_021611485.2 mRNA downstream 32418 10152795 ~ 10186202 (-) False LOC110529348
XM_021611495.2 mRNA upstream 553243 10786206 ~ 10792867 (-) False mycn
XM_021611496.2 mRNA upstream 553243 10786206 ~ 10792867 (-) True mycn
XM_021611497.2 mRNA upstream 688628 10921591 ~ 10932463 (-) True mrpl19
XM_036984741.1 mRNA upstream 915145 11148108 ~ 11162068 (-) False LOC110529363
XM_036984742.1 mRNA upstream 915145 11148108 ~ 11162069 (-) True LOC110529363
TU765319 other downstream 96647 10115090 ~ 10121973 (-) False G671820
TU765333 other downstream 96647 10115090 ~ 10121973 (-) False G671820
TU765324 other downstream 96718 10115090 ~ 10121902 (-) False G671820
TU765218 other downstream 245808 9971682 ~ 9972812 (-) False kif26aa
TU766004 other upstream 505261 10738224 ~ 10738686 (-) True G672436
TU766687 other upstream 1111510 11344473 ~ 11344782 (-) True G673053
TU767508 other upstream 1751871 11984834 ~ 11990363 (-) False LOC110529377
TU767500 other upstream 1752512 11985475 ~ 11994689 (-) False LOC110529377
TU767509 other upstream 1752512 11985475 ~ 11997491 (-) False LOC110529377

Expression Profile