RNA id: XM_021611497.2


Basic Information

Item Value
RNA id XM_021611497.2
length 2390
RNA type mRNA
GC content 0.54
exon number 6
gene id mrpl19
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 10921591 ~ 10932463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCATGTCGCGTCTCTCTTGAGACACATCCCTTTTCGGCTTCCGTAACAATTCACATGGACAGCGAAGGTCAGCTTCCAATATGGCTGCTAGCACAAGAAAGCTTGACAAAGTTATGTTTTCAATAAAGCTGTTACGGAATATACAACAGCAAAATGAACGTTTCTTGTCCACGTCTATGCGTCGCCTCGCCGAGGGGAGTGACGGTGGCAAGCCAACAAAATTCACCCCTCCACCAAAACCTGTCATAATTGACAAAACACAGTCCGAGGCTTCACTGCGAAAGTTCCTGAGTCCAGAATTCATCCCTCCCCGACAGAGAATAAACCCACTGAAGTTCGCAATTGAGCGCAAAGacatgatccagaggaggaaagTGCTGAACATTCCGGAGTTTTATGTTGGGAGTGTCTTAGCTGTGACCATGGCGGACCCTCATGCCAGCGGCAAAACCAACCGCTTTATGGGCATCTGCATCCAGAGAGGTGGCCATGGACTGGGAGCCACATTTGTCCTTAGGAATATTATCGACGGCCAAGgagTTGAGATCTGCTATGAAATGTATAGCCCACGGCTGCAGCAGCTGGAGGTGCTGAAGCTGGAGAAAAGGCTGGACAACAATCTGATGTACCTGAGAGACGCCCTGCCCGAGTACAGCACCGTGAACTTGGACATGAAGCCTGTGCCCCACTCTGTCACCGGGGACGTGCCCGTCAATAAAACCAGAGTGCGGATGCGTCCTAAGCCGTGGTCCAAGCGCTGGGAGCGGCCCAAGTACAACGTGCAGGGCATCCGCTTCGACCTGTGTCTGTCGCCCGAGAAGCTGGAGCACGCCCAGAAGTGGGCGGAGCCCTGGCGGGAGTATGACATGCTGAAAGAGTACGACACCACGGCCCTGGAGGAGCGCTTCCTTAAGGAGGTGCAGACAGAGATGAGCAAGTCAACATCCCCCTAACCCTCTTAACCAGGGGTGGGTACTTCCAGTAAGAGGGTGGGTAGTTCAATAAGAGGGTGGGTAGTTCAATAAGAGGGAGGGTAGCTCCAGTAAGAGGGTGGGTAGTTCAATAAGCGGGTGGGTAGCTCCAGTAAGAGGGTGGGTAGTTCAATAAGCGGGTGGGTAGCTCCAGTAAGAGGGTGGGTAGTTCAATAAGCGGGTGGGTAGCTCCAGTAAGAGGGTGGGTAGTTCAATAAGTGGGTGGGTAGCTCCAGTAAGAGGGTGGGTAGTTCAATAAGCGGGTGGGTAGCTCCAGTAAGAGGGTGGGTAGTTCAATAAGCGGGTGGGTAGCTCCAGTGAGCGGGTGGGTAGCCCCAGTAAGCAGGTGGGTAGCTCCAGTGAGCGGGTGGGTAGTTCAATAAGCGGGTGGGCAGCCCCAGTAAGCGGGTGGGTAGTTCAATAAGCGGGTGGGTAGTTCAATAAGCGGGTGGGCAGCCCCAGTAAGCGGGTGGGTAGTTCAATAAGCGGGTGGGTAGTTCAATAAGCGGGTGGGCAGCCCCAGTAAGCGGGTGGGTAGTTCAATAAGCGGGTGGGTAGTTCAATAAGCGGGTGGGCAGCCCCAGTAAGCGGGTGGGTAGTTCAATAAGCGGGTGGGCAGCCCCAGTAAGCGGGTGGGCAGTTCAATAAGCGGGTGGGCAGCTCCAGTGAGCGGGTGGGTAGTTCAATAAGCGGGTGGGCAGCTCCAGTGAGAGGGTGGGCAGCTCCAGTGAGAGGGTGGGCAGCTCCAGTGAGAGGGTGGGCAGCTCCAGTGAGCGGGTGGGCAGCTCCAGTGAGAGGGTGGGCAGCCCCAGTGAGAGGGTGGGCAGCTCCAGTGAGAGGGTGGGCAGCTCCAGTGAGCGGGTGGGCAGCTCCAGTGAGCGGGTGGGCAGCTCCAGTGAGAGGGTGGGCAGCTCCAGTGAGAGGGTGGGCAGCTCCAGTGAGAGGGTGGGCAGCTCCAGTGAGCGGGTGGGCAGCTCCAGTGAGAGGGTGGGCAGCCCCGGCTGCAGTGTGCTGGTTTTACTGTCAAATCAATACATTACATAAAGTTGTGGAAAACAAATCTCGTTTATTCACTCAATGAGCAATTAGTGACATGAATAGATGGATGAAGTGGCTGGGAGATGAAAAGCCCTTGACAGTACTGCCTCTGAGGAACAGTGTTCAGCCATCCCTGTTAAGCTCTTTCAACACTCGATGGCCCTCGGTCTTCCACCCGTCTCCATGTACATGATGTCtggtgagaggtggagaggaacatTTAGGAGTCAATCACCCAGGGACGATGGTGGAACCGTCTGCATAGCTGTGGTTACCTGCTTGCTTCATCGTATCTTGTATTGTATGTCTGGAAAAGTGTTTATGCATatcaatgtgcagttgcaagtaTCCATTTCTAAATTAAAAAGCTGTTAAACATG

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02884 RP-L19, MRPL19, rplS; large subunit ribosomal protein L19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU766253 lncRNA downstream 123110 10797693 ~ 10798481 (-) True G672660
TU766230 lncRNA downstream 174909 10746412 ~ 10746682 (-) True G672639
TU765997 lncRNA downstream 191990 10729386 ~ 10729601 (-) True G672429
TU765994 lncRNA downstream 192925 10728464 ~ 10728666 (-) True G672426
TU765991 lncRNA downstream 194957 10726114 ~ 10726634 (-) True G672423
TU766343 lncRNA upstream 18952 10951415 ~ 11003315 (-) True G672745
TU766353 lncRNA upstream 36100 10968563 ~ 10972832 (-) True G672754
TU766356 lncRNA upstream 36229 10968692 ~ 10972011 (-) True G672755
TU766418 lncRNA upstream 140931 11073394 ~ 11074025 (-) True G672810
TU766448 lncRNA upstream 194779 11127242 ~ 11129081 (-) True G672832
XM_021611495.2 mRNA downstream 128724 10786206 ~ 10792867 (-) False mycn
XM_021611496.2 mRNA downstream 128724 10786206 ~ 10792867 (-) True mycn
XM_021611487.2 mRNA downstream 688628 10218620 ~ 10232963 (-) True LOC110529351
XM_036984726.1 mRNA downstream 709047 10194850 ~ 10212544 (-) False LOC110529349
XM_036984728.1 mRNA downstream 709047 10194850 ~ 10212544 (-) True LOC110529349
XM_036984741.1 mRNA upstream 215645 11148108 ~ 11162068 (-) False LOC110529363
XM_036984742.1 mRNA upstream 215645 11148108 ~ 11162069 (-) True LOC110529363
XM_021611502.2 mRNA upstream 229971 11162434 ~ 11184353 (-) False LOC110529362
XM_036984743.1 mRNA upstream 253274 11185737 ~ 11210434 (-) False LOC110529181
XM_021611507.2 mRNA upstream 422882 11355345 ~ 11520698 (-) True LOC110529367
TU766004 other downstream 182905 10738224 ~ 10738686 (-) True G672436
TU765319 other downstream 799618 10115090 ~ 10121973 (-) False G671820
TU765333 other downstream 799618 10115090 ~ 10121973 (-) False G671820
TU765324 other downstream 799689 10115090 ~ 10121902 (-) False G671820
TU765219 other downstream 948779 9971682 ~ 9972812 (-) False kif26aa
TU766687 other upstream 412010 11344473 ~ 11344782 (-) True G673053
TU767508 other upstream 1052371 11984834 ~ 11990363 (-) False LOC110529377
TU767500 other upstream 1053012 11985475 ~ 11994689 (-) False LOC110529377
TU767509 other upstream 1053012 11985475 ~ 11997491 (-) False LOC110529377
TU767510 other upstream 1053012 11985475 ~ 11990444 (-) True LOC110529377

Expression Profile