RNA id: XM_036984754.1


Basic Information

Item Value
RNA id XM_036984754.1
length 2056
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110529371
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 11828959 ~ 11839997 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAAACTACACGAAGAAGAATGAGGTCAGCGGTAATTGAGAGCACAGAGTAGGAAGCGAATGTTGTGTAAGTTATGTACCAGAGGCACGTCATGTAACTTATTAATTTTAGTTATCAAGATAAAGATATTTTGGGATTTTCGTTCGTGCATAATTTCGGGTAACACTCTCGTAGCTTCATGGTAATTAATTAAACCTTTAAGGTATTTCTATGAGCGTGTATGTTTAATGAATGCTACATGTCACCTCAACGCTGACATTCATAATTATCGTACTATTGACATGTAGCCCTTACATTAGACAGTGCATGAAGCCATTTCTACTTTTATACACAGTTGATTTGATAGACATTTCAGGAAGTGGATAATAACATTCGATATGGGCTCTGTCAAAGTCACGGCGTGCTGCAGGCAGCTATTTTTGCCCCATGCAAGAGCACTTGCTTTAACTACAAAGATGGCTAGTTCTGGGAACATCATATGCTCCCTCCGAAGAAATCTCAGCTCCTCTTCGAGATTGCGGTCCAGCATGCCAGCTTGGGTGATTGACGAGTATGGCAACAATGGGGTACTGCGGTTCACTGAAGATGCCACAGCTCCCAGTGTCAACTCAGCAAGTGAGGTCTTAATCCAGGTCCACGCTGCAAGCCTCAACCCTCTCGACATATCCATGAGGAGAGGGTATGGGTCAAATCTTCTGAAGCTGAGACGGGACCCGGTGTCTTTGGGTCAGAACGGCGGCGAGTTTCCCATCATACTGGGTCGGGATGTCTCTGGCATGGTGTTGGATTGTGGGTCGGGAGTGACCCATTTCAAACCAGGAGATGAGGTGTGGGCGGCCATCCCTCCATGGAAGCAGGGCAGCCTAGCAGAGATGGTGAATCTGACAGAGTATGAGGTCTCCCACAAACCAAGGTCGCTGAGTCACAGGGAGGCGGCGTCCATCCCCTACGTGGCTGCCACGGCCCTGTCTGCCCTGGTCAACGCGGGCGGCCTGTGCAGAAACAACTGCACTAACAAACGagtTCTTATCACCGGAGGCTCAGGTGGTGTTGGAACGTTCTCCATCCAGCTGCTGAAGGCCTGGGGCGCCCACGTGACAGTGACCTGCTCCCACAATGCCGAGGGACTGGTGAGGGGTCTGGGGGCGGATGAAGTGGTGGACTACACGGCGGGAGACGTGGCCACGGAGCTGGGACTGCTGGAAAAGTTCGACGTGATCCTGGACAATGTGGGCGGGGACTCGGAGCAGTGGGCCCTGGGCCTGCTAAAGTCCTGGTCAGGGGCCAAATACGTGACCCTGGTCACCCCCTTCCTGCTTAACATCGACTCCATGGGCTTGCTGGAGGGAGCCGTCCACTCAGGACTCAACCTGCACCAGAAGGCCATCACGAACATGTGTAACGGGGTGTTCTACCGCTGGGGGTTCTACGCTCCAGACGGCCCGGCGCTGGACGAGGTCAGCCAGCTGGTGGATGCCGGAAAGATCCTTCCAGTGGTGGAGGACACGTTCCTGTTCTCCCAGGTGCCCCTGGCCTTCCAGAAAGTAGAGCGTGGTCACGCCAGGGGGAAGACTGTGGTCACCGTGGcccaagaggaggaggggaccgGAGTGACTGAAGAGGAGGGGGTGACTAGTGACACCCCAGAGCAAGTCAGGGAGGAAGTCAGGCAAGCAGCGCCAAAGAGCTAAACCGCTGTGATGTCAACACTAAGCATTGGGGCATTAAGGCACGcaactgttttgtttttttaaacgcTTTGCAACGGGCAACTTCAATCATTTTAGTTGTTTGGTCCCGATAGTCCCACCCTGTTTGTCAGTTTTCTTACATTTGCCTAATATGTACAAACCTGGATATGGTTTGTCCATGTCCATCCTGTAGAATGCTGAACTCTTGAGCTCTACTGCAAAACACTGGTTGGTATGCATTGTTTGCGCTTTTGCAGATAAACTGCTTGTTTGAGAAAGGCAACATTTATTTATCTTATAGTTTGTCTTGTGTGTTGAGAATTCTTTACGGAAAagtcaaatatatacattttggCCTGCGCAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23164 RTN4IP1; reticulon-4-interacting protein 1, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU767439 lncRNA downstream 23951 11801006 ~ 11805008 (-) True G673753
TU767125 lncRNA downstream 116148 11712598 ~ 11712811 (-) True G673467
TU767106 lncRNA downstream 135851 11692871 ~ 11693108 (-) True G673449
TU767079 lncRNA downstream 162268 11666458 ~ 11666691 (-) True G673422
TU767070 lncRNA downstream 175866 11652768 ~ 11653093 (-) True G673413
TU767478 lncRNA upstream 8868 11848865 ~ 11849707 (-) True G673787
TU767445 lncRNA upstream 43096 11883093 ~ 11885824 (-) False LOC110529372
TU767446 lncRNA upstream 43096 11883093 ~ 11914200 (-) True LOC110529372
TU767611 lncRNA upstream 125850 11965847 ~ 11966112 (-) True G673887
TU767514 lncRNA upstream 144102 11984099 ~ 11984685 (-) True G673811
XR_005052773.1 mRNA downstream 64559 11747055 ~ 11764400 (-) True LOC118965492
XR_005052774.1 mRNA downstream 64564 11747055 ~ 11764395 (-) False LOC118965492
XM_021611507.2 mRNA downstream 308261 11355345 ~ 11520698 (-) True LOC110529367
XM_036984743.1 mRNA downstream 618525 11185737 ~ 11210434 (-) False LOC110529181
XM_021611502.2 mRNA downstream 644606 11162434 ~ 11184353 (-) False LOC110529362
XR_002474370.2 mRNA upstream 43063 11883060 ~ 11885849 (-) False LOC110529372
XM_021611516.2 mRNA upstream 145449 11985446 ~ 11990478 (-) False LOC110529377
XR_005052777.1 mRNA upstream 146103 11986100 ~ 11990521 (-) False LOC110529377
XM_036984764.1 mRNA upstream 173725 12013722 ~ 12015746 (-) True LOC110529184
XM_021611520.2 mRNA upstream 186186 12026183 ~ 12029309 (-) True LOC110529379
TU766687 other downstream 484177 11344473 ~ 11344782 (-) True G673053
TU766004 other downstream 1090273 10738224 ~ 10738686 (-) True G672436
TU765319 other downstream 1706986 10115090 ~ 10121973 (-) False G671820
TU767508 other upstream 144837 11984834 ~ 11990363 (-) False LOC110529377
TU767500 other upstream 145478 11985475 ~ 11994689 (-) False LOC110529377
TU767509 other upstream 145478 11985475 ~ 11997491 (-) False LOC110529377
TU767510 other upstream 145478 11985475 ~ 11990444 (-) True LOC110529377
TU767583 other upstream 178619 12018616 ~ 12025742 (-) True G673863

Expression Profile