RNA id: TU767505


Basic Information

Item Value
RNA id TU767505
length 6214
lncRNA type read_through
GC content 0.44
exon number 10
gene id LOC110529377
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 11984834 ~ 11997491 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGCTTTACCACAATGGCACATGTATTCACAAAGGTGCCAGGAATCAGGCAAGACCTTAATGGAGAGAGTATTTATATAAGGCACTGTAGTTCAGAGATGGAAGATGACAACCTATTTATCAGGTGCTATGAATCATGATGGGGTGTATATCAATCAAACATttaatgcgtcccaaatggcaccttattccctttatagtgcccatagggctctggtgaaaagtagtgcactagatagggatagggtgccattttggatgaacACAATTttctattcaatcaaacactGTAAATCACAGCAATTCCATAAAGCATTTTTAGCCACAACTTGTTTTCAGTCTATTACTATAAAGCACTATAGCATTCAAAGCATTTTATTGAGATGCCATTCTCTATCCAAATGATTTTGACTGAAATATTTAGGTTGGCAATatgtttcttaaaaaaaaaatacatttcagtttgtccaatGCAGAATATGAAGTTGTTATTAGTATTTATTTTACAAGGCAGAGTTATTGAGCACTTACTAGTCATACTCATATCACATCACCCTCATTTGGAAGATGAATTACATTTTAACTCTTCATCTTGTAATGAACCATGTTTGTTTGGCGTGCATGAAAAGCCCTGCCAATAACATTGTAAAAGCCCTGCCAATAACATTGTAAAAGACCTgccaataacattttaaaaacccTGCCAATAACCTTTTAAAGGCCCTGTTAATAACATTGTAAAAGCCCTgccaataacattttaaaaacccTGTCAATAACCTTTTAAAAGCCCTGTTAATAACCTTTTAAAAGCCCTGTTAATAACCTTTTAAAAGACCTGCCAATAATATTTTAAAGGCCCTGTTAATAACATTGTAAAAGCCCTGCCAATAACCTTTTAAAAGCCCTGTTAATAACCTTTTAAAAGCCCTGCTAATAACCCTTTAAAAGACCTGCCAATAATCTTTCAAAAGCCCTGTTAATAACCTTTTAAAAGCCCTGTTAATAATCTTTTAAAAGCCCTGTTAATAACCTTTTAAAAGACCTGCCAATAATATTTTAAAGGCCCTGTTAATAACATTGTAAAAGCCCTGCCAATAACCTTTTAAAAGCCCTGTTAATAACATTGTAAAAGTCCTGCCAATAACCTTTTAAAAGCCCTGCCAATAACCTTTTtttttatcactgtCAGTCAGTCATTACAGTGCGGCCCGATGCCAGAGCACACACTCCGTCTCGTCCATCCCgatcagagagagaggtcacCTGTTCGTGGGCAGAACGAGCGTAGGACGCTTAAAGATGCACTAGAGATCTCTTATCTTTGCCATCTTTGTCTTTGTCTGATGCCACCAGCTATTGAGGGCTTTTTCTCTTTTAAAGTGGTCAAGTTCCTCTCCTATGCTTGTCTTGGCAGTACATAGGTGCTGCCGTTTCAGGAAGCCATGTTTTCTTCCGCTCTTCAGCAAATATTTATGATCAGGGTTCAATTTTCATTAGTAACCACCTCTGGAGACGTGGGTGCTGCTTTACAAGAGTCATAAATTATTGGGTCTCTCACTTACTGTGATCAAGGCATCCTGAGGACAGAGAGGCCTGTGCCACATCCGCAGAGGACAAACtcactgattctctctctctctctctctcgctccctacctctctctctctttcactccctacctctctctccctctcttgctctctctctctctctctcctctctctctctctctctctcgctccctacctctctctctttcgctccctacctctctctctctctctttcgctccctacctctctctctctctttcgctccctctctctctctctctctctctctctcactctctcgctccctccccatTGATTTCAATGCCATTAAAAAACAGGAGAAGAAGAATGAAGTGCATATACAAGTGAGACAATGCAGAGGGGAAACCACAAAGTATTACCACCCCCAGATCACTAGATCCACCAGGCTGATTGACCTGTAGAAATGTAGCTGTCACAAAGACATCCTGTCACAAAGGTGTCCATTTTCTATTCATGCATAGTTGTTGTCAACCATGTATATTATACATTAGAACAACTGTTCAGGACAGGTCACTCAATAGTCTACTAGGGAGCTCATCGTGCAAAAACATTGAATATGATGCCACCTAGTGCCAGTGGACCGTCCTAAGGGTATCCACAAATATACAGAAGCCTTAATTGAAATGCAAGAGGTCTTTGTCTCAAATGTGTGTGTGATAATGTaagtgagatatatatatatatatatatatactcacatatatatatatatacacacatacatacagacagacagagaaagacctTTTAGCCAATCAAAACACAGAATAATTTGCAGTTGTTACCTGAAGAGTGGGCCTGTTTTATTTATCAGTTTTGAGGCCTAGCTCTTTCTCTGTCAGAGACACAACCGCTGGTCCTTAACAACCAGGGCTGGCACATTTCACCTCCTCCAGAAAGAACACTCTCCCCGGGGTCATACTGAGACACCTCCACAGCTCCCCACCGTCTTATTgtgtaatataaatataaaataaatcagAGTCCTAGCTCACTGTCAGTTAGTGACATAACTGATCGTTCCTTCAGAGACTCAGGGCTGGCACACCTGATGTCATCGGCCAGGAAAGCTTTCTTCTGGTTCTTCTGCAGCCACTTCCACAGGTCCTCCACCTTCTTATCACACACCCAGGGGTTCTGGCTGAAGGCCACCCAAAGATGGTTGCTTGTCCATGGGGAGGAGAGTTGCTCCAGCAGGGTGTTGGAGATGTGACCAAGCCGGTTTAAGTTGAGAAACAGGAACTCGAGGCGATGGAGCCCCTGGAGGAGAGTCGGGGGAAGCCTCTCCAGTTGGTTCTCCTGGAGGAAGAGGTGCGTCAGGTTTGGGGTGTTCCTGAAGGCGGAAGGGTCCAGGGCGCTGAGTTGGTTCCCCTCCAGGTTGAGCCTCTCTAGGCTGCTCAGAGGATTCAGTGCCCCCGCCAGGAGCTTCTCCAGGCGGTTATGGGAGAGGTCAAGGTTCTTCAGGTGGCGTAGTTTCTGGAACAGGGCTGTGGGTACGGCCGTCAAGTGGTTCCCTGATAGGTCCAGCCAGGTGAGGTTACTGTTGTCAGGGAGCCAATCAGCATCCACACCGCTGATCAGGTTGTTCTTCAGCACCAGGTTACGCAGTGGAGCGTGGCTGAAGACATATGGTGGTAGGAAGTGCAGGTGGTTCCCTGTGAGATCCAACGTGTGCAGGTGAGGGACAGCTCTGAGGAGATCTGAAGGAAGTGTGCTCAGGTTGTTGTAATATAGTTGGAGCTCATTCAGAAGGGGCGTGGCCTGTAAGTGGTTGGCAGTAATCGTGCTGAGGTTGGTGGATTGGATGGACAAGGAGGTGGTGTTGCCTGGGAGACAATCGGAGGGGAACTGGGAGAGGGAGTCGTCACTGCAGACCACCTTGGTGTCGCTGGAAGAGAAATGGCAGGTGCACATGTCTGGGCAAGAGAGGGCGCCATTGCTACGGCTGCAACAACAGGTCAGCACGCACAGAGGAAGGAGGAACCAGGTGCTCATCTTTCTAAACTTACCTGAAGTCTTGCTGTCATTCATGTTTTGTTGCCTTCATTGGCTTGCTTGTTTCATCTGCTCTTACGACTATTTCAATGCTCTTtatataaaatgtgtgtgtgtttgtgtgggtcaGGCTATGCACCAGACAGAGTAAATAATGAGTGGGTTTAGATAAAGTCCACAACCTGTTTTTGTGGATTTATTGCAAAATGTAAACAAAGAATTAGAGACCTGGGCAACTGGGGAATTTCCATTCTTAGTCATTCATCATACGCTTATTATTTTGCTGTAACTATTTTTGGGGTAGTTGAAAACATGACATGGGCACTCTACACAACAACGACAAAATATCATGTAAATTAGCAGTTGAATTACAGCTATTTTTGTTACGTTCGTTgttggaatgagaccaaggtgcagcgtggtaggcaaaCATCTTACTTTTATTTCAAATgaacaccccccaaaaaaatacaaaCCGACCGTAACGTTCTGCAGGCTATACAGGAACTAACCAAATCAAGATCCCGCAACTGAAGGTGGGGAAAAAggtctgcctaagtatgatccctaATCAGAgtcaacgataaacagctgcctctgattgggaaccatactaggccaacaaagaaatagaaacatagatttgcccacccaagtcacaccctgaccaaaccaaatagagaataaaaaaggctctaaggtcagggcatgacaattTTGGTAATTTTTTACAGGTCAAATATAAATTGTTGATGTGAACAAAGAGACTGTGGTGGCCTGTTGTTTGCATGTCCTTCAGTTATGTTCAGAGATTAATATCAGTACTTGTTTAATTAAGCCTTTAACATCTGACTACTTTTACAACAATTTGACTTAATACATCATTATTTAATAGGCATATTATTCAGTCAAGACGTGGGGCCAGTTGGTGGGGTATTTATACCCCTTTCTGACAGACTAAGGTGCTAGAGAGCAAGGATAGGACACCAAGATAAGTAATTTAAAATTCCAATTCAGGTCACTTTTTTATTTACGTGGATGTGTGCATAATTATGATGAAAATACACAATATGCAATAGACCAACATTACCTTAGATTCATTTGAGATAGGAGTTCAATAGACCACACTTTGAGATAGGTTAAAGTGATAATTCATAATCTGAGTGAAAAAGGTTTGATGGATCAGAGTCCTAGCTCACTGTCAGTTAGTGACATAACTGATCGTTCCTTCAGAGACTCAGGGCTGGCACACCTGATGTCATCGGCCAGGAATACTTTCTTCTGGTTCTTCTGCAGCCACCTCCACAGGTACTCCACCTTGCCATCGCACACCCAGGGGTTCACCGTGAGGTCCAACCCCTGCTCCTCAATGGAGTGAAGCTGGTCCAGCAGACCAGGAGGGATGTGGCTCAGCAGGTTATCATCCAGACTCAGGTGCGCCAGGTTTGGGAGGCCATGGAACAGGGTTGGTGGCAGTTGTCCAAGCCGGTTCGACAGAAGAAACAGGTGTGTCAGGTTGAGGTTGTTACTGAAGGTAGACACGTCCAGGGTGCTGAGTTTGTTCGCCTCCAGCGTCAGCCTCTCCAGTTTGGTCAGAGGGTGTAACAAATTTGGCGGGAGCTTCTCCAGGTGGTTATGTGAGAGGTCAAGGTTCTTCAGATGGCGTAGTTTCTGGAACAGGGCTGTGGGTACGGCCGTCAAACGGTTCCCTGACAGGTCCAGCCAGGTGAGGTTACTGTTGTCAGGGAGCCAATTAGCATCCGCACTGCTGATCAGGTTGTTCTTCAGCACCAGGTCACGCAGTGGAGCGTGGCTGAAGACATTGGCGGGAAGCTGATCCAATGCGTTACCCGAGAGAGCCACCGAGAACAGATATGTCGTGTTTGTCACCTACCAGATTCACCATGCTGCACCATCTTCCACGTTCCTGGAGTACCCGATACTCATTGCCCAAGacaCCGTCCTGCTTCTGCTCATCCTCTATTACAATGGGAAAGCCAAGCACAGCTTGATCTACATTGCACTATTTGTAGGGGGATGGAAACTTGTCACACTACAAGATTGGATCATTGATCTGGCTATGAGCCTCTGTACCTTAATCAGTGCCAGCAGTAAGTTTGCCTCTGCCCAGTGCCTGTACCAGTCCAAGGACTCCTCCGGGGTCAGTGCCCTCGCCTGGAGCATATCTTGCTACACCTGCTTGGCGAGGATGTTCACTACAATTATGACAACAGCAGACATACAAGTTCTCACCCGGTTCGCGGTCTTGTCATCGCTCAATGGATTTGTGCTGGCCATGATATTCCACTACAGAAGAGATGTCAAAAAGGTGGAATGAGCTTTGGAGATGAGTCTGTCAGTCACCTGAGTCATATTCTTCAGGCAGCAAACAGAAGAACACAGAATGACACATGGAGGGACTAACTGGACTTAAAACTGGACTGTCCTATAAAGAAAACTAGCATTTTCACTTGCAAAATGTCTGACTTGTGAAACCACAAACAAGGTCTTATCCACTGGTCTTTTGGTCCCATAACATGGTATTGAAGCAACCCTTAGGAAAAAAAGTCTTAAATTCTCCAAAATGATGAGCAATACAAGTAAAACacacaataaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU767514 lncRNA downstream 790 11984099 ~ 11984685 (-) True G673811
TU767611 lncRNA downstream 19363 11965847 ~ 11966112 (-) True G673887
TU767446 lncRNA downstream 71275 11883093 ~ 11914200 (-) True LOC110529372
TU767445 lncRNA downstream 99651 11883093 ~ 11885824 (-) False LOC110529372
TU767478 lncRNA downstream 135768 11848865 ~ 11849707 (-) True G673787
TU767671 lncRNA upstream 158105 12155596 ~ 12155883 (-) True G673941
TU767672 lncRNA upstream 158680 12156171 ~ 12156395 (-) True G673942
TU767675 lncRNA upstream 207559 12205050 ~ 12206365 (-) False G673943
TU767673 lncRNA upstream 211685 12209176 ~ 12210248 (-) True G673943
TU767698 lncRNA upstream 213151 12210642 ~ 12210867 (-) True G673966
XR_002474370.2 mRNA downstream 99626 11883060 ~ 11885849 (-) False LOC110529372
XM_036984754.1 mRNA downstream 145478 11828959 ~ 11839997 (-) True LOC110529371
XR_005052773.1 mRNA downstream 221075 11747055 ~ 11764400 (-) True LOC118965492
XR_005052774.1 mRNA downstream 221080 11747055 ~ 11764395 (-) False LOC118965492
XM_021611507.2 mRNA downstream 464777 11355345 ~ 11520698 (-) True LOC110529367
XM_036984764.1 mRNA upstream 16231 12013722 ~ 12015746 (-) True LOC110529184
XM_021611520.2 mRNA upstream 28692 12026183 ~ 12029309 (-) True LOC110529379
XM_021611530.2 mRNA upstream 164282 12161773 ~ 12163688 (-) True LOC110529387
XM_036984779.1 mRNA upstream 319115 12316606 ~ 12329268 (-) False mideasa
XM_036984780.1 mRNA upstream 319115 12316606 ~ 12330034 (-) False mideasa
TU766687 other downstream 640693 11344473 ~ 11344782 (-) True G673053
TU766004 other downstream 1246789 10738224 ~ 10738686 (-) True G672436
TU765319 other downstream 1863502 10115090 ~ 10121973 (-) False G671820
TU767583 other upstream 21125 12018616 ~ 12025742 (-) True G673863
TU767588 other upstream 142879 12140370 ~ 12141994 (-) True G673867
TU767753 other upstream 286346 12283837 ~ 12284220 (-) True G674015
TU768544 other upstream 618389 12615880 ~ 12697323 (-) True lpgat1
TU769232 other upstream 1377448 13374939 ~ 13398443 (-) False LOC110529426

Expression Profile