RNA id: XM_021611530.2


Basic Information

Item Value
RNA id XM_021611530.2
length 1916
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC110529387
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12161773 ~ 12163688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATAAAGGAAGCGCTTCAGTGGCTGGACAGGGAGCAGATAGTTGAGAAATATCGAATCCAGCGGAGAAACGCAGACGGTTACGTTCAGGGAAGTTTAACCAGGCTCGTACCATAATTTGACTTCTTAGCTAACACAGACAGTTTATACGTCATATTTGTTTAACAGTTAGGATCAAGGGAAAGTATCGGTTAAGAGAAGCAAATGGCAGAGATACGAAAAAAGCTGGTCGTAGTCGGCGACGGCGCCTGCGGAAAGACCTGCTTGCTGATTGTGTTCAGCAAAGACGAGTTTCCTGAGGTCTATGTGCCAACTGTATTTGACAACTATGTGGCCGACATTGAAGTGGACACCAAGCAAGTCCAACTAGCACTGTGGGACACGGCTGGACAAGAGGACTACGATCGCCTTCGCCCGCTATCCTATCCGGACACTGATGTCATCCTGATGTGCTTTTCCGTGGACAGCCCGGACTCCCTCGAAAACATCCCCGAGAAATGGGTGCCAGAGGTAAAGCACTTTTGTCCCAACGTGCCCATTATTTTAGTTGCCAACAAAAGAGACTTGCGCAACGACGAGAATGTTAGGAGCGAGCTGTCCAGAATGAAACAGGAACCAGTGAAAACAGAGGACGGGCGCGCCATGGCCATGCGCATTGGGGCATATGACTATTTGGAGTGTTCTGCTAAAACGAAGGATGGTATTCGGGAGGTGTTCGACACTGCGACACGTGCTTCTTTACAGAAGAGATCAAAACCCTCCAGCGGTTGTGTGAACTGCTGTCTGTTGTTGTGAATCAACAGCTAACGTGAGCAATAATGTATCTTACGTTAATGTACGGCTGCCAACACCACCAAGACCTGTTGTCATTGTGCTTGAAAAGATGCATGACCAAGTCTGTCTCCCATTAGGCTAAAGACTTTCTTTTGAGCCGGTAGCCATGAGAAATGTAATAATCCTCAGATTGTGGATCATCTTGATCTATTCACCTGATCCCTCAATTGACGCGAATACATACTCTAATACAAGTAGCCAACAACTGACACTCCATGCGATTCTAATTTACTGAATAAATTCATTTGCCAAGCATTCCGGATGCTGCCTGAAATGATGCTGTAGCCTTTGAGGATATTGTTCCAAGGAGCCTACTTGAGTGTCGGGTGTCAAGGCTTGTTGACATGCAACTAGTTAGTCACGAAACGTGGTGATGCCTTAAACTCCACGCACATTTACATGGACAAAAACCCACACTTCCCTTGTCTGTCACGAATGTTGAGTACAATTTATATTTCAACTTTATCTGCCGATTGTGAGTGGTGTTGGTCCTTTAGCTGGTCGACATTTGAGACAATATCCACAGGGACGTTTTATTAAACCAACTTCAAAACGCAGGTCTGTGTGTGGCAATCAAGATGTTTGCTCATGAACAAAGGCATGTGCACAAGACCGAAGTACATGCACGTGATGTATGCATGATAACTGGTGTTTACATGGTTTTGTACATGTGCCAGGTGATAGAAATGTCAACTTCAGTACCAGCACTCTAAAAAGTCTAGCTATTTGTCTCAAATTCCAAGCAGCTGAAGGACCAAGCACACAGGCAACCGGTAGAATAAATTCAAACttaatttattcaacattctggcttgtaaggaACATTTCCATGATTGTTTGTTATGTTTGTTGTTGCTCTCCTAATGTTTTTAAAAGGTTGTTCATCCTGCCGTGTGCATCATTGCATTAACATGACAGGGATACCACTGCAGCACTGTGTAAAGCATGAATGCTATTatttcacatactgtatatggTGGAGGTTCAAAAAAGATCCCCATAGTGCAATATTTTGTCTTAGTTTCAAGTTTGTCAGTTTAttgttttatgtttttaaataataaaGATATGATTAGAATGTG

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07856 RHOB; Ras homolog gene family, member B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU767672 lncRNA downstream 5378 12156171 ~ 12156395 (-) True G673942
TU767671 lncRNA downstream 5890 12155596 ~ 12155883 (-) True G673941
TU767502 lncRNA downstream 164282 11985475 ~ 11997491 (-) False LOC110529377
TU767505 lncRNA downstream 164282 11985475 ~ 11997491 (-) False LOC110529377
TU767514 lncRNA downstream 177088 11984099 ~ 11984685 (-) True G673811
TU767675 lncRNA upstream 41362 12205050 ~ 12206365 (-) False G673943
TU767673 lncRNA upstream 45488 12209176 ~ 12210248 (-) True G673943
TU767698 lncRNA upstream 46954 12210642 ~ 12210867 (-) True G673966
TU767587 lncRNA upstream 53147 12216835 ~ 12224401 (-) True G673866
TU767676 lncRNA upstream 66374 12230062 ~ 12231219 (-) True G673944
XM_021611520.2 mRNA downstream 132464 12026183 ~ 12029309 (-) True LOC110529379
XM_036984764.1 mRNA downstream 146027 12013722 ~ 12015746 (-) True LOC110529184
XR_005052777.1 mRNA downstream 171252 11986100 ~ 11990521 (-) False LOC110529377
XM_021611516.2 mRNA downstream 171295 11985446 ~ 11990478 (-) False LOC110529377
XR_002474370.2 mRNA downstream 275924 11883060 ~ 11885849 (-) False LOC110529372
XM_036984779.1 mRNA upstream 152918 12316606 ~ 12329268 (-) False mideasa
XM_036984780.1 mRNA upstream 152918 12316606 ~ 12330034 (-) False mideasa
XM_036984778.1 mRNA upstream 152918 12316606 ~ 12330035 (-) False mideasa
XM_036984781.1 mRNA upstream 152918 12316606 ~ 12330035 (-) False mideasa
XM_036984786.1 mRNA upstream 182219 12345907 ~ 12348688 (-) True churc1
TU767588 other downstream 19779 12140370 ~ 12141994 (-) True G673867
TU767583 other downstream 136031 12018616 ~ 12025742 (-) True G673863
TU767509 other downstream 164282 11985475 ~ 11997491 (-) False LOC110529377
TU767500 other downstream 167084 11985475 ~ 11994689 (-) False LOC110529377
TU767510 other downstream 171329 11985475 ~ 11990444 (-) True LOC110529377
TU767753 other upstream 120149 12283837 ~ 12284220 (-) True G674015
TU768544 other upstream 452192 12615880 ~ 12697323 (-) True lpgat1
TU769232 other upstream 1211251 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other upstream 1211251 13374939 ~ 13378281 (-) True LOC110529426
TU769335 other upstream 1320405 13484093 ~ 13484934 (-) True G675413

Expression Profile