RNA id: XM_036984790.1


Basic Information

Item Value
RNA id XM_036984790.1
length 1931
RNA type mRNA
GC content 0.47
exon number 9
gene id capn3b
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12371350 ~ 12412260 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagagaggaggGGTGTTTGTGGTGAAACCTATTGTGAAGGCATGTGTTTGTCAAGGTGTTTGTCAAGATAGGGAGGGGATTGgggggcaagtgtttaaattgGGCTGGAATTTGCATAATAATAAGAGTCTAGTAGcatcagttgtgatgtgtgtgtagcaagaatgtatatgtgtgtaggtgtgtgtttatgcgtgtgCACGCACCCAAACCATGCCAGTGAAGTTGCACTTGACACAATTCCACCTGTaggtattttacaccattttgcCAATGTAGCCATTAGCCCAGTGTAACCTCTGACCTACTAAAATACGGGGTCAGTGACAGGGCTGAAACCAAATCTACCCCAGGCCACATAGCATCTCCTGTCCTGACCAGGGAGAGACTTCCGGACACCCCCACTGATCCACAATCAGCTCTAAAAGCCAAAACCACAGCAACCGGATGAGGAGAGCGGAGAACACAAAATGTTCAGGGCCATTTACCAGCAGATTGCTGGGGAGGACATGCAGATCTGTGCCAACGAGCTCAAGGTGGTCATGAAAAGGGTACTGGAAAAACATAATGACATGAAGACGGACGGCTTCAGCTTAGAGAGTTGCCGGAGCATGATCGCTTTGATGGATACGGACGGCACAGGAAAACTGAACCTGCAGGAGTTCAAACACCTGTGGAGTAAGATCAAAGCCTGGCAGCTGATCTTCAAGAAGTATGACAAGGACAAATCAAGCACCATCAGCAGCTTTGAGATGAGGAACGCAGTCAATGACGCAGGGTTCCGCTTAAACAACCAGCTGTATGACATCATCACGATGCGCTACGCTGATGAGCACCTCAACATCGACTTTGACAGCTTCATCTGCTGCTTCGTCAGGCTAGAAGGCATGTTCAGGACGTTCCATGCCTTTGACAAAAACGGAGACGGCACAATCAAGCTCAACGTCCTCGAGTGGCTCCAGTTGACCATGTATGCTTAGATCACCCAGCCATCAGAGTCCTGCTCTCTGGTCTACCCTCAGCCATGCTTCTACCAACATCGCTTAGATCACCCAGCCATCAGAGGAGTCCTGCTCTCTGGTCTACCCTCAGCCATGCTTCTACCAACATCGCTTAGATCACCCAGCCATCAGAGGAGTCCTGCTCTCTGGTCTACCCTCAGCCATGCTTCTACCAACATCGCTTAGATCATCCAGCCATCAGAGGAGTCCTGCTCTCTGGTCTACCCTCAGCCATGCTTCTACCAACATCGCTTAGATCACCCAGCCATCAGGGGAGTCCTGCTCTCTGGTCTACCCTCAGCCATGCTTCTACCAACatcgccttcctctacctcagcCAATtccccatgttctctctctctcaagacaTTGCCATTACTCTCATTCTAGCATAGAAAACAAATGAAATGCAATGGTGATATGTTCTGCAGTCACGCTGCACAAATGATATATCTCACAACGCCGAGAGAAGTGTGTAATGTCTCAAGAAAGTATATTAACACGATGTAGCGATCTTCTAAGACACACAGGTTGGCTGGAGAGAAAGACCACCTGGAATGTCAACTTGTGTCGACTGGTGAGAGGTATCACCCTGGCAGCACCGAGGGACTTGAATGGGGAACCCTTGCTCCAGTACATTTGGCTAGTGCTTTAAATTACAAGCCTTCAAGTGTTATTGCCTGTCCTGTAAATAACATGTTTAGCATTAGTGGATTGAATACATATCATTGCTTAGCTTTACTTCCTGaagtgtttccattcccctttaagtcATTGGTGGTAACTACATTACAAGATCAATGTTGTGTTCCTGTAAGTCTCTGTGATAATATCATGTGGATACTTAGATCTCGAGAGACAGTGATGACGTTGTTGGACTGGATTGTTTCAGAagcatttttttttcttccattaaATTCAAACTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU767990 lncRNA downstream 21061 12353466 ~ 12353800 (-) True G674209
TU767991 lncRNA downstream 21727 12350335 ~ 12353134 (-) False G674209
TU767968 lncRNA downstream 49479 12325158 ~ 12325382 (-) True G674204
TU767967 lncRNA downstream 53813 12320206 ~ 12321048 (-) True mideasa
TU767964 lncRNA downstream 57540 12315015 ~ 12317321 (-) False mideasa
TU768046 lncRNA upstream 45018 12429554 ~ 12431319 (-) True G674254
TU767986 lncRNA upstream 47911 12432447 ~ 12432797 (-) False G674208
TU767987 lncRNA upstream 47911 12432447 ~ 12433143 (-) True G674208
TU768123 lncRNA upstream 182511 12567047 ~ 12567554 (-) True G674326
TU768130 lncRNA upstream 188562 12573098 ~ 12573901 (-) True G674332
XM_036984786.1 mRNA downstream 26173 12345907 ~ 12348688 (-) True churc1
XM_036984778.1 mRNA downstream 44826 12316606 ~ 12330035 (-) False mideasa
XM_036984781.1 mRNA downstream 44826 12316606 ~ 12330035 (-) False mideasa
XM_036984780.1 mRNA downstream 44827 12316606 ~ 12330034 (-) False mideasa
XM_036984779.1 mRNA downstream 45593 12316606 ~ 12329268 (-) False mideasa
XM_036984795.1 mRNA upstream 55442 12439978 ~ 12457013 (-) False si:dkey-12h9.6
XR_005052778.1 mRNA upstream 57188 12441724 ~ 12457014 (-) True si:dkey-12h9.6
XM_021611563.2 mRNA upstream 157334 12541870 ~ 12552126 (-) True rd3
NM_001124528.1 mRNA upstream 208146 12592682 ~ 12602018 (-) True slc30a1a
XM_021611564.2 mRNA upstream 220160 12604696 ~ 12610815 (-) True nek2
TU767753 other downstream 90641 12283837 ~ 12284220 (-) True G674015
TU767588 other downstream 232867 12140370 ~ 12141994 (-) True G673867
TU767583 other downstream 349119 12018616 ~ 12025742 (-) True G673863
TU767509 other downstream 377370 11985475 ~ 11997491 (-) False LOC110529377
TU768544 other upstream 231344 12615880 ~ 12697323 (-) True lpgat1
TU769232 other upstream 990403 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other upstream 990403 13374939 ~ 13378281 (-) True LOC110529426
TU769335 other upstream 1099557 13484093 ~ 13484934 (-) True G675413
TU769337 other upstream 1101143 13485679 ~ 13486137 (-) True G675415

Expression Profile