RNA id: XM_021611563.2


Basic Information

Item Value
RNA id XM_021611563.2
length 1907
RNA type mRNA
GC content 0.47
exon number 3
gene id rd3
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12541870 ~ 12552126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCAAAGACTTCACAAGCAAGACGAGAACTATCGGAGTCCGTGCGACCGACAGGAACACATCTTCCAACaacatctctctcttcatcaatcTTTTGGTCATAATATACATCATATATTCACTCCCTTGTGAATTCACTCCTGCTATAGCTTCCAAGAGTGACGAGAGTTCAGCACGGGGCACGAGGGGAACAAGGCGTCGGTGGCGATGGCCTCGTGGTTCAGTTGGAGCAGCGAGCCGGACTACCGAAGTCCGCGGCGGGACCCGTCTGACGTGGTCATGGACACCCTGATGCTGGAGCTCAACTGGCAGCTGAAGGAGGCCGAGAGGATGCAGCGTGAGAGGGACAGTGAGTACCGGCGCCTCCAGACTGGCGTGGACTACAGCTGGCTGGTCAACACGCCACGCAACACCTATGACGTGTCACCTGGTGAGAAGCTGGGCCTGGAGGACCTGTGCTCCAAGGTGCATCCATCCTACTGCGGAGCTGTCATACTGAGGTTCCGCCAGTTGGTGACTGAGAACGAGCCGGAGGTGCAGGAGGTACCTGCCCTTTTCCGCACAGTCGTCCTCGAGGCCTTGGACCGCATGAGGGAGGAGCAGGAGGCGCAGCGTCTCTCGCGCCAGTGGAACAACAAACGGGCCATGAGCATGTCTCTCATGAACTTCAAGTCACGCGTCAAGATCAACCCCTTTGGCAGCACCTTGGGCCTGACCTCgactggagggggaggggagggtgtgtgcGAGCTGAAGACGGTGTCAGAAGATGTGGAGAAGGCGCTGGAGGAAAGGGCTGACAGGTCCCAGAGGGTGTGGAGCATGCCCAACTTCAGACATAAAGGGCTGTACACTACCAAGGCCGTCTGAGCTGGGAATCCATAGGACAGTATTGTGGTTCAGTGGAGGATAGAGCAACGCTAGTGAGAGGTAGCCTATAATAAACCCCTGGAACCTGCCCAGTCTGCTTTGAACAAGAATGGGGAGAAATAGGAGACAtgcctctcccatcctctccttcgGCAGTGTGGGGTCATCCACTATTGAAAGCTTTTGACTTATGAATTTGATACGGGGAGCTATGCTAAGGATATTTCACAATGTTTTGAGATGTGTTGCATGCACTTCCTTTTACTGTGCTTTTTTTTCATTATAACAACATAATACTCCGGAGCTACATGTATTTAAATTGTAGTTAACCAATGAGACTTATACATGAAACAATCAacaagttctgtttttttctcAAGCATTTTTTTGGCACTGTAAAGGGAAGTGCTGCTTATCATGGCTTTTTAGTGACCTTTTTATAACTTGAAAAATCAACAGTAAACTGACTGCTCTATTGGAGTGGTTACCATGACATTGTAGATTATATCAATCTTCGTTCAAACTCTTTACAGTTGGAATACAGTGCATCTTGATCTCTTTGTGTTGTCGGTCTTACTTTATTGCTATTGACTTATCAGCAAAATACAATTGCTGTGCAAATATTTGAAATGCCAAATATTTCAAATCACTTTCTTACAGCAAAAAGCATAGAAATCCACATCTAAGCTATGGGGTAAGCATGAAAAAAGCTAGGCGGTAAGCACAAAGGCACCGTTTTATTGCTCAGCAACCAAGGTTGAGGTGCCTGGGCTATTTGCCTTGTCCAATAAGACTGACAAAGCCTGGATACAGGACAAACTGTGTCTCATAAGAGGCACACAATGGCAGCAATAATTCATACACAATGGGAATGAATGCTTGATTGTACTGTAACATTTCAGATGACTATTGTAAAGAATCTCTATAACAGCAGCAGTTTATTGCTGTTGAGAGAAGAGCTGTTTTATTGGGTGGACTGTAAGCAGTTTGCCACATCAAGTGGGCTTCACAAAATATAAAAAGCTCATCCAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU767987 lncRNA downstream 108727 12432447 ~ 12433143 (-) True G674208
TU767986 lncRNA downstream 109073 12432447 ~ 12432797 (-) False G674208
TU768046 lncRNA downstream 110551 12429554 ~ 12431319 (-) True G674254
TU768024 lncRNA downstream 157227 12371350 ~ 12384643 (-) True capn3b
TU767990 lncRNA downstream 188070 12353466 ~ 12353800 (-) True G674209
TU768123 lncRNA upstream 14921 12567047 ~ 12567554 (-) True G674326
TU768130 lncRNA upstream 20972 12573098 ~ 12573901 (-) True G674332
TU768132 lncRNA upstream 23750 12575876 ~ 12576161 (-) True G674334
TU768134 lncRNA upstream 25316 12577442 ~ 12577667 (-) True G674336
TU768140 lncRNA upstream 34615 12586741 ~ 12586951 (-) True G674341
XR_005052778.1 mRNA downstream 84856 12441724 ~ 12457014 (-) True si:dkey-12h9.6
XM_036984795.1 mRNA downstream 84857 12439978 ~ 12457013 (-) False si:dkey-12h9.6
XM_036984788.1 mRNA downstream 129610 12374861 ~ 12412260 (-) False capn3b
XM_036984789.1 mRNA downstream 129610 12374861 ~ 12412260 (-) False capn3b
XM_036984787.1 mRNA downstream 129611 12374861 ~ 12412259 (-) False capn3b
NM_001124528.1 mRNA upstream 40556 12592682 ~ 12602018 (-) True slc30a1a
XM_021611564.2 mRNA upstream 52570 12604696 ~ 12610815 (-) True nek2
XM_036984801.1 mRNA upstream 63753 12615879 ~ 12697323 (-) False lpgat1
XM_036986823.1 mRNA upstream 145380 12697506 ~ 12707399 (-) False ints7
XM_036986824.1 mRNA upstream 377137 12929263 ~ 12943135 (-) True sytl3
TU767753 other downstream 257650 12283837 ~ 12284220 (-) True G674015
TU767588 other downstream 399876 12140370 ~ 12141994 (-) True G673867
TU767583 other downstream 516128 12018616 ~ 12025742 (-) True G673863
TU767509 other downstream 544379 11985475 ~ 11997491 (-) False LOC110529377
TU768544 other upstream 63754 12615880 ~ 12697323 (-) True lpgat1
TU769232 other upstream 822813 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other upstream 822813 13374939 ~ 13378281 (-) True LOC110529426
TU769335 other upstream 931967 13484093 ~ 13484934 (-) True G675413
TU769337 other upstream 933553 13485679 ~ 13486137 (-) True G675415

Expression Profile