RNA id: NM_001124528.1


Basic Information

Item Value
RNA id NM_001124528.1
length 3276
RNA type mRNA
GC content 0.48
exon number 2
gene id slc30a1a
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12592682 ~ 12602018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACGTGCATAtcgtaagctagctagctagctaactcagTTAACGTTAACAAGTGATCAGCGGAGAGAAATGGCTTGTGAACCTAATCGTGTGCGGCTAATATGCATGCTTTCATTGACTTTTGGCTTTTTTATCGTGGAGGTTGTCGTCAGTCGGATCACTGCATCTTTAGCAATGCTTTCGGACTCCTTTCATATGCTATCGGATGTCATAGCGCTGCTTGTGGCTTTGGTGGCCGTGCGCTTCGCTCAGAAAACACAATCGACAAATAAAAACACCTTCGGATGGATCCGGGCTGAGGTGATGGGGGCTCTGGTCAACGCAGTGTTCCTCACAGCTCTCTGTTTTACCATAATATTGGAGGCCGTCGAGCGATTCACCAACCCACATGAAATCGAGAAACCCCATGTAGTTATCGGTGTGGGGGCCGCCGGGCTCCTGGTCAACCTCCTCGGGCTGTGCTTGTTCCACGGACACGCAGGTGGTGGACACGGGCACTCCCACGGAGGAGGAGGCCATTCTCATGGAAATAAGAAAAACAAGCGGGGTAAACTATGCAAGTCAGAAAGACCGAATGGATCATCAGGAGAGGAGACCAACAACCTGGTAGGAAGCCACAACAGCCCCCCTAATGGCGTGAACACCGAGAGACGTAGACATGAGATCGTTTGTAACGACAGTGAGATGCAGATGAACGGCAGCGCTCCCTACGAGGAGCTGGACTACAGCCACGACGAGGCCTCGCTCAACATGCGCGGCGTCTTCCTACACGTGCTGGGCGACGCCCTGGGCTCTGTCATCGTGGTGGTCAACGCCCTCATCTTCACCTTCGTATGGCGGCCGTGCCCGCCCGGCGAGACCTGCTTCAACCCATGCATCGACAGCCACTCCACCGACGGCAACAGTTCTAGCTTTCAACGGACCGTGGTGGGACCGTGCTGGGTGCTGTACCTGGACCCCACGCTGTGCATCATCATGGTGGGTATCTTGCTCTACACCACCTACCCACTGCTCAAGGAGTCTGCACTGATCCTCCTGCAGACGGTGCCCAAGCAGATCGACATGCATCGCCTCAACGAGCGGCTGCTCTTGCTGGACGGTGTGCTGGCCATCCACGAACTGCACATCTGGCAGCTGGCGGGCTCACGCATCATCGCCACGGCGCACATAAAGTGTCACGACCCCACGTCCTACATGGACGTGGCCAAGCGCATCAAGGACTTCTTCCATGACGAGGGCATCCACGCCACCACCATCCAGCCTGAGTTTGTTACCATCAACTCCGAGTCAAGTGCCTCCCTCTGCGAGCTCTCCTGCCGGACACAGTGCGCACCTAAGCTGTGTTGTGGCGCTGCTGACAAGCTGGGCGTGGCTGGTGCTGGTCCGGTAGGCTCGGAGAAGATCCTGAGTGGTGAGGGGAATGCGCTGGCGGCCTCGGCCATAGATGTAATCAACGAGACCCCACAGGGAGCAGCAATCCTGGAGCAGGCGGCCACTGCAGTTGTCCAGGTGGTTCCTCAGCCGGAGCCCGAGGTCGCCATCACCCGAGAGGTGGAGTCTTCTCTGTGAGAGACCAGACAGTCAGAGGAGTTTTCTTTTCAAGTGCGGGCTAAACTTGCCGACGGGTTGTCGTTTGTACAGCGCTCTCGGTTGCTGGAGACGGGTTGAAAAATGGCTCCGCCGCGGTCTGGTTTGATGACACCCTCTGTTCTGAGCCCCTAACCCTCCCACCACTttaccccacctccacaacctacCCCTAGCCACCTTTACCTCCTCACCCCTGACCCCCTCACCCCTGACCCACTCTCTGAGTGTCACAGAGAGCAGCACATTGATGATACTTGTGACTTCACCTCTCACCCAGGCTGGGGTTCAGCCTGGTCTGGCCTGCTGCATGTGTGGCCTACCCCTCATTAGCAccatgttgtgatgtgtgtgtggtcCTGTCCCTCCATGGTGTCTCTGTGCCAAAGCTTCTCAATGCAGGGCAGAAGGGACAAGGGGAGACTCCAACAAGGACAAAGAGCAAATACTACATATGCAAGGCAACGCACACCTGTCTACTCCGCAGGTTTTTAAAATCGATCTCTGAACCTTTCATTTAtgtattattacatttctgttggATAGGCTTTGAACATCTCTATTTTATTAGCCTTGGGCGCCCAATGGAAAATGATTATATTACAACAaaaatatttatgtatttaaGTTTAGTAATGATCTATTTCTCTCTGTCAATGCTTTCATAATATTTAGTTTGGAtgatggattacattttttgtaATTGTTCTGCCACTTGAATATTTGACAAACCATCTATGCtgtagacttttttttttttgaaattgTGCATTTTGCTTTTAATTATGACTTTTCTGGCCTTGACTCTGTTTTAATGGCTGTTGTGAGTTGAATGCAGATgctgtgttaaaaaaaaactCACCTTTATTTCAAACTGATTTTAAATGGCACTGAGTACAGTTGGAATAAGTACTGTAGGTTAGCCTAGCTTGTATTGGCAAACTTCGACAAACATCAAATCGGCCTTGCAAGCCTGTGCGTCTATCACTGAAATAAATGTGTACTACAAAATGTCAACAACTATATTGTTTTAAATCTATGCTGGAGGACATTCAGATGGGTTGTTGAAATTCATACTAATATTCCTCATGAATATGTTGAGGAAGGGACCTAGTCAAAATCCATCCTGAAGGTTTTTAGTTTCTAGTCCTTCTGCTGTGACGTTGCATGACCAAACTGAAGTGTTCTTTGAATCACAGAGCTTCAAAACAGTAGCCTACTTCCTCGTTTTCTCAGATAGCAAGAATAACTTTATCGAAATGTCACTTGGGCCTAAGCTTCTCCTTTCTTTGTAGTGAATGAGTTTGTTAGGCTTCATGTGCCGATTTTGACAGTAATCTTAgtggcctttttttttttaatagaagGAAATCTGATCATTCCTCATCCAGTATCATTTATTATCAACATCACAAAGATATCGTTTTTATATGATGATTCAAGGATGCATTTCAGATATCCACTCAAAGTTAATGTGTATGCAGTATAGAAGTATTGTATTGGGAAATGCATTTTGACACCTTCCTTTGTTTTGAAAATGTCTGGTTACTATCATTCAGTGTCTTTGAGACTCGTTCTCTCTGTGCAAATTGAGTTGTCGTTTTTTGGATTTTAGATATGTGTTTTTGATATATTACAGTACCTGTCAATGTGTCATTGTGAAAATTAAACATGCTTGTTTGGTACAGT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0010043 response to zinc ion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K14688 SLC30A1, ZNT1; solute carrier family 30 (zinc transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU768140 lncRNA downstream 5731 12586741 ~ 12586951 (-) True G674341
TU768134 lncRNA downstream 15015 12577442 ~ 12577667 (-) True G674336
TU768132 lncRNA downstream 16521 12575876 ~ 12576161 (-) True G674334
TU768130 lncRNA downstream 18781 12573098 ~ 12573901 (-) True G674332
TU768123 lncRNA downstream 25128 12567047 ~ 12567554 (-) True G674326
TU768551 lncRNA upstream 22407 12624425 ~ 12625843 (-) True G674722
TU768561 lncRNA upstream 40408 12642426 ~ 12642796 (-) True G674732
TU768545 lncRNA upstream 97158 12699176 ~ 12699324 (-) True ints7
TU768601 lncRNA upstream 102049 12704067 ~ 12704268 (-) True G674770
TU768637 lncRNA upstream 164355 12766373 ~ 12766850 (-) True G674806
XM_021611563.2 mRNA downstream 40556 12541870 ~ 12552126 (-) True rd3
XR_005052778.1 mRNA downstream 135668 12441724 ~ 12457014 (-) True si:dkey-12h9.6
XM_036984795.1 mRNA downstream 135669 12439978 ~ 12457013 (-) False si:dkey-12h9.6
XM_036984788.1 mRNA downstream 180422 12374861 ~ 12412260 (-) False capn3b
XM_036984789.1 mRNA downstream 180422 12374861 ~ 12412260 (-) False capn3b
XM_021611564.2 mRNA upstream 2678 12604696 ~ 12610815 (-) True nek2
XM_036984801.1 mRNA upstream 13861 12615879 ~ 12697323 (-) False lpgat1
XM_036986823.1 mRNA upstream 95488 12697506 ~ 12707399 (-) False ints7
XM_036986824.1 mRNA upstream 327245 12929263 ~ 12943135 (-) True sytl3
XM_021611574.2 mRNA upstream 349259 12951277 ~ 12999904 (-) True enpp1
TU767753 other downstream 308462 12283837 ~ 12284220 (-) True G674015
TU767588 other downstream 450688 12140370 ~ 12141994 (-) True G673867
TU767583 other downstream 566940 12018616 ~ 12025742 (-) True G673863
TU767509 other downstream 595191 11985475 ~ 11997491 (-) False LOC110529377
TU768544 other upstream 13862 12615880 ~ 12697323 (-) True lpgat1
TU769232 other upstream 772921 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other upstream 772921 13374939 ~ 13378281 (-) True LOC110529426
TU769335 other upstream 882075 13484093 ~ 13484934 (-) True G675413
TU769337 other upstream 883661 13485679 ~ 13486137 (-) True G675415

Expression Profile