RNA id: XM_036984801.1


Basic Information

Item Value
RNA id XM_036984801.1
length 4367
RNA type mRNA
GC content 0.47
exon number 8
gene id lpgat1
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12615879 ~ 12697323 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATTTTACAAGCTAGAGGAGCAGACGGCAGAATCTATTCAACATCACCCGATGTACGAACTGAAACGCGGCCGCCTTTGCATTAAAACAATAAAGGCGTGTTATATGGCTCTTTCATCAAGGGATTGTTGCATTTGGATTAAAAGAGACGCAAGGGATGTAGCTGGAGCTGATGCCTGGCTATCCTGCTTGCGATctactaacgttagttagctaactgATGTTGCATCGATGGAATTATTCTAGTGCCATTGATTGAGAACAACCCAGCAACGCTAAAGAAGACGTTACAGTACATGGATAGCGGCGAGCTATCGGTGACGGGAGTCTGAACGGCACATAGACAGGATGATGTATTACTCAACGTTGAAGGATCTAACATGTTAACTAAATACATGTGACTTGGTATTCATCCATTTTAAGCCAGCTATctctaacgttagctggctggtttTATCGTCCGGCATTTGGACGAAGTGATAGTAAGATTGGGAGTGTGTACCAGTATGGCACAGCTTCTAGAAGGCGCCCGCAAACTGGGCTGGGTACTCTTGAACGCCTTCCTTCGTTTCATCTTTGTGTTCATCAATAACTGTGTAGCAATCCCTTCGTATTGCCTCTACTGCATTCTTCTTCAACCTCTGAGAATAATGGACAGTCGCTATTTCTGGCACATTGAAGGAATAATGTTCAAATGGATGTTGGCAATGGTGTCACTTTGGGGCTGGGTTGCAGGCTATACAGTGATGGAATGGGGCGACGATGTAAGGCCCCTTTCTGAAGAGGAAGCCATGGTCATCGTCAACCACCAAGCCACAGGGGACGTGTGCACCCTCATGATGTGCCTGCAGGACAAGGGCACGGTGGTGAGGAAGATGATGTGGTTGATGGACCATGTGTTCAAGTACACTAACTTCGGCCTGGTGTCTCTAATCCATGGGGACTTCTTCatcagacagGGTAAAGCGTACCGGGACAAGCAGCTGATCTACCTAAAGGACCACCTGGACCGGTACTACCGCAGCCGCGACAGGAAGTGGATCGTGCTCTTCCCGGAGGGCGGCTTCCTGCGCAAGCGACGGGAAACCAGCCAGGCGTTTGCCAAGAAGAACTCACTACCGCCCCTGACGCACGTGACGCTGCCGCGGCTAGGTGCCACCCAGGTGATCCTGAAGACCCTAGGACCGCAGCAGGAGAACGGCATCCTGGGGAAGGAGGCTAGCACAATGCACCCCAGCCAGTCAGGTAGTAAACCCAAAGGCCTACAGTGGGTGGTGGATGTGACCATAGCGTACCCCAAAGCCAGGCCCATGGACATCCAGACGTGGATCTTTGGCTACAGACCCCCCACGGTCACACATGTACACTACAGGGTGTACCCCATAAAGGAGGTTCCGGTAGAGACCAAGCCCTTGACAGATTGGCTGTACCAGAGGTTTGTGGAGAAGGAGGATCTACTGGCTCACTTCTACGAAACAGGAGCCTTCCCTCCACCGAAAGGCCAGAAGGAGGCCGTCTCCCGGGCGATGACCCTTGACCCCGTGCGGCTCTGTCTCATCCAATCCCTGGCCTTTGCCTCGGGCTACCTGTGGTACAGCGTCCTCCAGTACTTCTACTGCTGTTTGTTCTGAGTGTGCTGAAGAGGATGGAGTTTAAAAGTGGACCAGACCCTAATGGCACTACATCTGGATCAGTCGATGGCTTGCCCGCCCCGGCGCCATCTCTCCTCCCTATGATGGATGAATGTACATTTAGCAAAAACCGGGAAAAACTGAGAGAAAAAATGACCATGTAGGAGGCTATTTTCCCCCCTGGATACATGaatacctacacacacagacagacggacagacatacacacacacaattgactGAAGCCCATACTTCTGAACATGAATCATTTACACAAACTTACTACTTGGATATAAACGCCCCAATCTAGTTGGTCTCTCCAATGGAGCCTCATTCTCAAATCAAGAATGGGGCTCAGGACTGAAACTGGGGGTGTTTTCAAGTGGACTCTCTTCCTGGTCTTTAGGTGTAGTTTTACAGTGTGCGAGTATGCATTGTGTCTGCCATTGTACCCACCCCCACCCTCGGGTGAACCAACACCCACCCTCGGGTGAACCAACCCCCAGTTGGACCTCGCTTCAGGCCTGCTGATTCTGCAGTTGACCCACCCTACAGAGAGGGGGGGCTGTGGTATGTACCATCAGAGACTACCATGCCAACCCCTCTCCTCTAGCCTTCATTGCACTAAAAAGATCCCTACTACCCCCCTCTTCTACTCCAGGAAATATTCCTGAATGGTAGCTGttaatgtttgtttattttaaaTTGCCCCTCCCCTTAACAACGGCCATTGCATTTGTTGTGGTCGTCGTCGCTCTCTATCTATGTTGAAGTCATGGAGACTTTACTCTGCCTGTCTTCGACAGTATTCTGAACTGACTGACTGCAGGGGAATCTTCTTGTTTACACTAGCGGCCCTCCGTCTGGGCCTAAAGGGACGCTGGCGACGATGTCAGGCTCCGGTTAGGACTGTTTCCACAACATGTGGTTGGGGGTACCTGGTTCTGGAACCAAGGGGGGGAGgaggacacagaggaggaggaacagtgCCCATACGCTGATGACAGAACACTGATGGCACATTGGGACAGCACTCTGATCCGATCCACCCTGAAAACAAACTCCCCTcacaccctctccaccccctgtcctcactcgtacacacacagagcagagtgGATCTCTGTCCACATAGGAACGTCTCAGCGAGCCAAACTGAAAAAGGAGGACGAAGCTGAATTTACCCCCATTGGACTCCATACTGTAGTTTTACAAATATCTAAGTAATGGGGTGGGGAATGacataataaaaatataattttttataGATGTGGCTACCCTAATGCTCTGCattctaaatttgagattttggctTACACACTCATAGGTGTCGTTACTGTAAATTTACagcataacccccccccccccttatatatatatataattgatgTCGTGCTGCTCCACGATAACGGAGTTTCGACAGCAAATCACTATTAGTGGTCAGATTTTATTTCAATTTTAAATGACTTGAACTGTTGTCCTTACGTCATGGGTATGTTTATTCTTGTACATAACGAAGCTGAGGAAGAAATTCAATGTTGTGAGGGACTGCAACCGATGTTAATTCTCTCTTGGTCTGTACTATTTCTGATTTGTTTTTAATTTTGAAATATCATAAATGTTTAAAGAACAAGAAAAAAATGAGGAAGAGAAACCTAACGGCTTTTGAGACAAGTCACTTCCCTGTTCCTTGACCTTTggtttgacctctgacctggatGTTATTCATTCACGCTTCATGAATCCAGAGGGCTCGGCCAGGCTCTCATCTCCTACACTGCTCATTGATACACATATGGCCCTGTTGGAATACTTCTGAAATGCATCCTTTCCTTTCTATCTTTCTTAACATAATCACAGCTCTGAAGTGGTTGGATTGGTGGAAGTAATGGGACAGGAACTTAGGCCCCTCCCCCCTAGGCACTGGATGATTCCCACTTGGAGATGTTAAAAGGACTTGATTGATGTGTGCAGTATATGGCAAATCTCCCACCTAGCCTATTAAAGATATTGCCAATTTACTGATCTCTATCCAGTCCTTTTAGATCTTAGGGGTACCAAGAAGCTGTCTATTGGTAGGGCATTATGTTTTGATTTGAAACTAGACCATCCAGGAAGAAATCACTCTTCACATTGGAGGGGAATTCAGACACGGCCCAGCAATTATGCACCAATTCTCTCCCAAAAGTTGTTTTAATAATACCATGGGGCGGGTTTTCTATCAAAAAATCTATATAAACACACCTAAGAGGTATTATGCTTTAGATGAACAGCTACAATCATGATGTCTAAGGAATGCAAACGGAATGCATTTTAGTCATGACTTACCTCTTAAACTGTGGATAATACTGTCCAGTAACAGGCTGTGTATGAAAGGCAGAAGGCTGGCTGGTTCGGGAGATCAGGAGTCAATTTGAGAATTGGGACGTACATTTTTAGCGGTCATCTTTGTGCCGGTCCCGTGAGATTGCTTTTCAATGTGAGAGAGTGACACAAAATAAGGCTtcatctttttttcttcttttttttaactgTCTCCAAAGAAAGGCAGGGGAAAATCATATTTTCTAGATATGGTTTTAGGAAAGAAAAACAATGACAACGTTAAGAATTTTAACAAACGATAGTAGAAACTCTGtaattttccattttgtactccTCCCTTTCTTCCTAGCTACACAGCCATTTTACAACACAAAGAACTTGTGCTGGAATAAAAGTGATGGTCATAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU768140 lncRNA downstream 28928 12586741 ~ 12586951 (-) True G674341
TU768134 lncRNA downstream 38212 12577442 ~ 12577667 (-) True G674336
TU768132 lncRNA downstream 39718 12575876 ~ 12576161 (-) True G674334
TU768130 lncRNA downstream 41978 12573098 ~ 12573901 (-) True G674332
TU768123 lncRNA downstream 48325 12567047 ~ 12567554 (-) True G674326
TU768545 lncRNA upstream 1853 12699176 ~ 12699324 (-) True ints7
TU768601 lncRNA upstream 6744 12704067 ~ 12704268 (-) True G674770
TU768637 lncRNA upstream 69050 12766373 ~ 12766850 (-) True G674806
TU768649 lncRNA upstream 84317 12781640 ~ 12820029 (-) True G674818
TU768652 lncRNA upstream 85582 12782905 ~ 12824148 (-) True G674820
XM_021611564.2 mRNA downstream 5064 12604696 ~ 12610815 (-) True nek2
NM_001124528.1 mRNA downstream 13861 12592682 ~ 12602018 (-) True slc30a1a
XM_021611563.2 mRNA downstream 63753 12541870 ~ 12552126 (-) True rd3
XR_005052778.1 mRNA downstream 158865 12441724 ~ 12457014 (-) True si:dkey-12h9.6
XM_036984795.1 mRNA downstream 158866 12439978 ~ 12457013 (-) False si:dkey-12h9.6
XM_036986823.1 mRNA upstream 183 12697506 ~ 12707399 (-) False ints7
XM_036986824.1 mRNA upstream 231940 12929263 ~ 12943135 (-) True sytl3
XM_021611574.2 mRNA upstream 253954 12951277 ~ 12999904 (-) True enpp1
XR_005052779.1 mRNA upstream 462142 13159465 ~ 13164697 (-) True LOC110529421
XM_021611580.2 mRNA upstream 623132 13320455 ~ 13331256 (-) False LOC110529423
TU767753 other downstream 331659 12283837 ~ 12284220 (-) True G674015
TU767588 other downstream 473885 12140370 ~ 12141994 (-) True G673867
TU767583 other downstream 590137 12018616 ~ 12025742 (-) True G673863
TU767509 other downstream 618388 11985475 ~ 11997491 (-) False LOC110529377
TU769232 other upstream 677616 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other upstream 677616 13374939 ~ 13378281 (-) True LOC110529426
TU769335 other upstream 786770 13484093 ~ 13484934 (-) True G675413
TU769337 other upstream 788356 13485679 ~ 13486137 (-) True G675415
TU769793 other upstream 1286303 13983626 ~ 13986108 (-) False G675834

Expression Profile