RNA id: XM_036986823.1


Basic Information

Item Value
RNA id XM_036986823.1
length 5870
RNA type mRNA
GC content 0.47
exon number 11
gene id ints7
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12697506 ~ 12707399 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGCTGATTGGTTGGAAAGCTTATACTTCCTGTACTACGTCACTTTCTACCTTTGTGCGGAATGAGTTTCAAGTTTATACCGTTGAAGTGAATATAAAGTTATTTCACGTGAAGTCTAAAATATAAGCAATGTCGCTTTTAACTGCACGTCCATTCTTGTCAGAGGCTGGTTATGGGGAACAATCATTTGATACAAATTCAGCTTTCATGGAGTTGGACAAAGGTGTGTACAGTTAACCAGTCATCAAGCAACTAGCTTGCTAAGCTAGCTACTACAATTAAAATGACAAGATAGCTTGTTTGCTATTCGTCACAGTGATAAACAAActaaaactagctagctacattcagACACTCCCAGTCCggggaggggtgcttaagtgtggatGCCCCGGTTCCGCTTGTGGACAAGGTTATCGAGATGGCTGAGACTCGGTGATGCCCAGTAAGAGGGGTGTTGACCGGGTAGGGAGAGTAGGTCTCAGGCCCAGGGATAGCGCAGGCGGTCTGGAAGTATAGGCCTGGAGTCGGAGGTCACCAGGTCAATGGGGCCTACCTGGAGTTCAGGAATCCCCAAGGGAGAAGGCCCAAATGAATAGGTGTGTGAATGACACTGTCCTTCAGGGGAGCAGAGCAGGCAATTAATGTAAAAtcttgtgagatgaaaatggacaaacaaaagggtgtgcaatatagaagggtagtcagtggacattctgatccttgtttgaggtcagtaggtcacatgaccaaggagctattgaaatgagAAAGTTTGAAAAAAGTATGTAAAATTGCGTGAGATTAAAATGGACAAacaaaagggtgtgcaatatatcAGGCTTGTCAGGGGATATTCTGACAATAGTTTGAGGGTTGtaggtaggtcacacaagctgtTGGAATTCGAAACATTAAAAATTAATGTTAAAACGTGTGAGATAAAAATGGACAAACAAAAGGTTGTGCTACATGGCTACTCAGTGGATTTTCTGAAAGTAGTTTGAGGGTTGTAGGTCATAAGActaaggagctattgaaatttgaatCTTTAAAAAATTCTCATAAAATCTCATGAGATGCAAATCGCCAAAcaaaagggtgtgcaatgtgttgGCCCACAGAGTGTACATTATGAACCATGTTTGAGGTGTATGGGTCACATGAACAAGACGCTATTGAATTTcagaaatgtaaataaataattttaaatgGTGTGAGATGTAAATAgacaaaaaaaagtgtgtgcaatgtgtgtgtCTGCCATCGGGTTAGCTACAACCAGGTTTGAAAGTTTTAGGAGTAATGGTTAAtaaagagctattgaaatttgaaaAATTACatttgtcactatgttgacggTCCGTAACTGCTGTTGGTGGACGTATGGAAAACTACAGACAAATATCCGTCGACTATCCAACCTGAATTTGACTTTACCTCTCGGTCCACAGCAACGACCCTGTGACCAGAGCAATCATGCTCGGGTGTCATGGCATGTTGCTCTCTTTGTCTTTCCATTAGAGCTTGATTATTATGAGGGTGGTTTAGTCCACATTCCACACAGTAGATGTGTTTCAGATTTGCAAGATGGTCATCATTAGTCTCACAATTCAGACAATTGATTCCGAAATATTGCattcagtgccttcggaaagtattcagacctcttgactgggtgggtataatttgtggaacgttccaacagaaatctgttccaaaaacgttgtaaataacaaggttgccaacaaacaatGCATACAAAGTAGCATGATCAATTCACTAGCTGCCGAATAGGCATCAACTCACCACGTAGCTAATTTGTAATGTTTGTCCATAGGCTACCAGagtgaggacagacatttttAGAATAAACGTGGTCAGTAAAAAACGTAATTAAATAGCCTACTCCCTACTACCCAATATCTTCTTCTGCCGCTATACAACTTTGTATGCATTGTTTGTTGGCACCTTGTTATTTACAAAGTTTTTGAAACAGAGTCCTGTTGAAACGTTccattggacaagttcagatagTACCTCCTGGTTTCTGAGCGTTTTCTTCCATTTCATGCCAACTGAACATGACCCCTTGTGATCTCCCGTTGGCCCATGCTATGTTTCACTATGCTCTTGTTCCTCCACAGCTCTGGTTTCAGGTCCCCGGTGGACCTGAAACTGAAGCTAATCCCTATTCTGCAGCACATGCACCACATTGCCAGCCTGGCCTCTAGCAGCCTGGCCTCCAGCAGCCTGGCCTCCAGCAGCCTGGCCTCCAGCAGCCGGGAGCTGCTTCAGCAGCTGGTCACTTCCTACCCCTACACACCCATGGTCATTGTCACCCTGCACACCTTCACCCAGCTGGCCGCCTCCTCGCTCATCGACATCCCCAAATGGTTACAGCTGTTTCTCCAGTACATGAAAGAGGACCCTAGGAATGCAGTCAAGAGACTGGCCATCCAGGACTTGAAGCTCCTGGCTAAAAAGGCCACCTATCTCTGGATAGGAAATGGCGATGTTGGCGGGCACAGTGACTCCATGGGCAGAGAAACAGCATTCCTGCACATGATGCATCTGGAGCAGGACACCGTGATGGGGGTGGAGTCTCTGCTGGTGCTCTGCAGTCAGGGCGACCACCCCAGAACTCAGGCCACGCTCAAGGTGGATAGCACCCTGGTCCAACTGCTGAAGAGTCGCCCCCACCTCAGCCAATCGGCTGTGGCGTTCCTGCTGTGCCAGCTGCACTCGGCCTTCGACCCCTCACACGTGCTGATATGCCACGCCCGGGCGGCCATCGCCACCCAGCTGCCCGACACCGTGATGGGGGTGGAGTCTCTGCTGGTGCTCTGCAGTCAGGGCGACCACCCCAGAACTCAGGCCACGCTCAAGGTGGATAGCACCCTGGTCCAACTGCTGAAGAGTCGCCCCCACCTCAGCCAATCGGCTGTGGCGTTCCTGCTGTGCCAGCTGCACTCGGCCTTCGACCCCTCACACGTGCTGATATGCCACGCCCGGGCGGCCATCGCCACCCAGCTGCCCTCTCTGATAAATTCTGCGTGTGAAGTCTATTCAAGTTGTTTCCAAAGCTGTTCTCCAATCATGAATCTCACCTACAAGATACTGACATCTGGCATGTGTCACCTTTCCCTGGCGACTGTGGTGTTTGTGGCTAGCCAGTCGTCCCTGTCGGCGGAGGTGAAGACGGTGATCAAGCAGCAGCTGGAGAACATGGCCATCGGTTGGCAGACCTCGCGCATGggTTGCCATGAGTTCTCCACCAAGCTGTACCAGAGCCTGCAGACGCATGTGGCCTCGGAGCATTTCTACTTCTGGCTCAACGGTCTGAAGAAGTTCTCCCAGGCCGTGCTGTGTCTTAGCGGCCTGGAGGACAGAGACTACAGTGTAGCTATGGCGGCCATCGCAGAGGCCCTGCGCTCTTACCAGAAGGGCATCACCTCCCTGACGCttgctctctccccatctcctcggACCCCAACCGAGCCAATCCCGGTGCAGAACAACCAACAGCTGCCTCTGAAGGTGGAGGGCGTGGTGCAGCATGGCTCCACCCCCGGATTGTTCGGCAAGATTCAGTCTGTCTACCTCAACGTCAGCTCCGCTCTCCAGACCAAGACTGGTGGGCTGGAATACTAGATTCCACTGGTCAGCAAGACCAATGAAATTGAGCCGCGGGTGGAGCCCCACAACGACTACTTCAGCACCCAGTTCCTGCTCATCTTTTCCATCCTGGGCAGCCACACGGTCAACGTGGAGGCCTCAGTGGTGGACGAGATCTGCATGGAGTGGAAGACGCCCAAAATCACTGTGTCGGTCAAGTCCCTGGAGGACCTTTACTCCCAGCAGCtctgccaccaccaccaacagCAGCAGGCACAGCAGGCTAGGCCCAAGCCGGCCCCCCCCAGAGGAGTAGTGTACATGCCCACTTCCAGTGATACCCTCGTAAAACCCCTCTAACCCATTGCCTTGTCCCGAAGGTCTTGGTTTGTTTCCTTCCCTTTCCTTCTCTGAAATGACTGGACTGAAGAAATAGAGGCAACGGTTTGGTGAGCATTCACCTACTCATGGTTGCTTTCACTTATCCATTTCTTTTAGGTTAGTGGTCACAGAATGGAGGAAGGGAGACAAAGCTATGGAACGTTATAGTTCAGCCCCCCCAGGAGGTTGCTTGTCTGGCAGAATTTCAGGTGACTGTTTACTAATATTCTATACATTTTCCAATTGTTAAAGACCACATTTTACCACAAACTCCGCAATGTGAGTCTTTGTGCGAGTGTAATTTAATTGTTGTCACGTGGGGGAAGTAGGACAAATGCCCATTATATTATACGGATTGGCTGCGGATCCGAGTTGTCTGGAACCCTCTTCCCAACCGCTAGAGCCAAAGCTTCTGCGCATGTGTGGGATTCTCTACATAACGCACAGTCTCTGCTCTGCTCGTTCGGCTGCCCAGAGAACAGGCTAATCAGGCGTATTTGTGGTGAATGGTGCTTATTTAATGAAGTTAGATCGAAGCTAAATCAATGTCTGCAAGATCACAATATTAATATTCTACATCACTTAATATATATTTGTGCCTTTATTAGCTTTCAATAAAGGACTTGTAAAGTGGAAATATAAATGTTCAGCAAAGCTACTTACTCCATCTGTAGTTTAGTGAAGAGAATGCAGCATTTAGCCATTACATTAAATTATCCATGGGCAGGGCCGCCTCAGCATAAGGTGCCCTTGACTGCCAGTGAAAGTATTCTAAACCATTTCCACCTTCCATCCCTTTACTCGGCGCTGTTCTTCACAAGACCAGCAGGGGGCGGTCAGTGACTATTGTAGAATAATGTTCGACGGTGGCAAAACAAAATCATTGAACGGTAATAATGATATTTGGTACAAGTATGGATGGACTACTGTCTCTTGATCAATTTGACTTGTATGCAGCCCCTTCTGTTATTGTTACATGTCCTTcagaaatgtatgtttttttcagTTAGGTACAGTTCATTTTATTCCACAATAGCTTCAGTGATGGACTGATGTAGGCACTGATGCTAtttatttgaagaaaaaaaaaataacactGTTCATCATCTCTGGTTCAAAATCATTTGGTGATCGGTGGGGACAGTCGGCACTTGCTCAAATCCAAGGTTTTGGTCAGCGTCGTCGCCATAGGGAAGATCTCAGTTGCATACTCCTCACGTCCTCTCTcccctcgtctccttctcaaaacccattggaggagaaagtCCCATAACACAGATTCTCGCAGCAGTATGTAGGAGGGAGAGTCCTAGATATGAGAAGTATGCAGGAGGGCATGAGACGAAGGAATATGTAGTTTCGGTGGAGAAAGTTGTGGGAGTGCCCATGGGGCTGGAGATCAGAGGTGTCCGGTGAGAGAAAGGCAGGTTGAGGTTGTTGTCAGAGTAACAGAAAGTGTTGTATGCTGAAGCAAtgaagagggaggtagaggaagatgGTTACAGGGTGAGGGATCCTGAGATGATTCCTGTGAGTAGGCAGAGAGTGATGGGAAGAATATGTGCTTTAGTAAGGTAGGTTTCTTGGCATTCATAGCTATGGTTGTCAATTGCACGGCAGAAATGGATCGAAAGTCACAGAAAATAGAGGTTATGGTGGCAGCGGCAAATACTTGGGATTGCGAGGTTTTACTGCAGTACAGTTGCAGAGGGTGTTGATTGGTAGTGTTCTGTCCTCCCAGACCTTAGGTCTGGAGAAGGATTAGAGGAgataaatagtggaatggggtgtTTCTTTGTTATATAAATATGGTTTAATTTTAAAGGGCTAATAGTTGGCAATGGAAATTTTCCCTTTCTCAAATTGTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU768561 lncRNA downstream 54710 12642426 ~ 12642796 (-) True G674732
TU768551 lncRNA downstream 71663 12624425 ~ 12625843 (-) True G674722
TU768140 lncRNA downstream 110555 12586741 ~ 12586951 (-) True G674341
TU768134 lncRNA downstream 119839 12577442 ~ 12577667 (-) True G674336
TU768132 lncRNA downstream 121345 12575876 ~ 12576161 (-) True G674334
TU768637 lncRNA upstream 58974 12766373 ~ 12766850 (-) True G674806
TU768649 lncRNA upstream 74241 12781640 ~ 12820029 (-) True G674818
TU768652 lncRNA upstream 75506 12782905 ~ 12824148 (-) True G674820
TU768576 lncRNA upstream 84738 12792137 ~ 12792549 (-) True G674747
TU768715 lncRNA upstream 163157 12870556 ~ 12871735 (-) True G674877
XM_036984801.1 mRNA downstream 183 12615879 ~ 12697323 (-) False lpgat1
XM_021611564.2 mRNA downstream 86691 12604696 ~ 12610815 (-) True nek2
NM_001124528.1 mRNA downstream 95488 12592682 ~ 12602018 (-) True slc30a1a
XM_021611563.2 mRNA downstream 145380 12541870 ~ 12552126 (-) True rd3
XR_005052778.1 mRNA downstream 240492 12441724 ~ 12457014 (-) True si:dkey-12h9.6
XM_036986824.1 mRNA upstream 221864 12929263 ~ 12943135 (-) True sytl3
XM_021611574.2 mRNA upstream 243878 12951277 ~ 12999904 (-) True enpp1
XR_005052779.1 mRNA upstream 452066 13159465 ~ 13164697 (-) True LOC110529421
XM_021611580.2 mRNA upstream 613056 13320455 ~ 13331256 (-) False LOC110529423
XM_036984806.1 mRNA upstream 613056 13320455 ~ 13331260 (-) True LOC110529423
TU768544 other downstream 183 12615880 ~ 12697323 (-) True lpgat1
TU767753 other downstream 413286 12283837 ~ 12284220 (-) True G674015
TU767588 other downstream 555512 12140370 ~ 12141994 (-) True G673867
TU767583 other downstream 671764 12018616 ~ 12025742 (-) True G673863
TU767509 other downstream 700015 11985475 ~ 11997491 (-) False LOC110529377
TU769232 other upstream 667540 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other upstream 667540 13374939 ~ 13378281 (-) True LOC110529426
TU769335 other upstream 776694 13484093 ~ 13484934 (-) True G675413
TU769337 other upstream 778280 13485679 ~ 13486137 (-) True G675415
TU769793 other upstream 1276227 13983626 ~ 13986108 (-) False G675834

Expression Profile