RNA id: XM_036986824.1


Basic Information

Item Value
RNA id XM_036986824.1
length 2386
RNA type mRNA
GC content 0.51
exon number 17
gene id sytl3
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12929263 ~ 12943135 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAAGAAATTGCACCCGGGGCCACTTCAACCAACCTCATTCACCTCAGCTCTGTCAAGCAGCAGTTGTGTGACAGCAGGAAGGAAGGAAACAGAAAGTGAAGTGTTTTCCTTGTTACCTTGGCTGCACATAAGAATCTGCCTCTCTCAGGGTGACCACGAGTCATACAAACAGCACTGAGGCCTCAGCTCAAGAGTGAACAAAGTGAACATCAGTCATCGGACTTTGTGAAGAGGATCCCTGTGACTGTAGGTCAGAGTTTGCTTCTTGGATGCAGCACTATGAATGGGTTAGAGAGCAGAGCGTAAGAGGTAGTGCTGGTCACCAGGGCAGAAACACATCAAGGTCTGTGATGCGAAGCGGAGAGAGCTTCTGTGAATATCGTGACGGGGACATGGGATGTCTCTGACTGTGCAGCGAAATCAACATGACTTTCATTCTGCCCTCAGTCTGGTAACAAGTGAAGACGTCGTCCAGCTTGAAGCAACATCCGGCACCCAATAAAAAGAGAAAGAGGGTGGAACAAAGGGAGGAGACAGAAGAAGaataagcgagagagagagagagaaaaggagagactagagaggtaAAGTGGGGACGAGAGAAGAAAGAAACTCACATTTTTACAGATGGATCTGGGCGTGCTCAAggctctggagagagagaaggttctGGAGGTTCTTCAGAGAGACAAACTTTTGCGCAGCACGGATGACGACAGGATAAGGAGGCTGAAGACGGAGCTACAGGAGATCCGAAGGAAAGGTGCCAAGAGTTTTGCCCGGCAGTACAGCGAAAGGACTTGCGCCCGCTGTCAGAGGCCGTTGGGAATGTTCTGGAACTCGGGCGCCGTGTGCCGAGGCTGCAGCCACCGCGTCTGCAACAAGTGTCGTGTGGGCGTGTCCGCCCTGGACTGGAAGTGTACCGTCTGCCACGCCTACAGGAAGGTTAAGATCAGGTCCGGGGAGTGGTTTTTGGAAGAAAGGGCCAAGAAATTTCCACCTGACTCGGAAAGGCATGAGACTGTTGGGGAGAAGCTACTAAAGTCTTACCAGAGGTTGAGTCATATAACAGTCGTTCCTCCAACCGCTCCACCCTATTACGATGGTCCATCCTTCAGCAGATCAGGGGGACTGAACAATTCCTTTAAAAAACCATTCACCAAGTCTATGGAGGACCTGATGGTTTCCCTCACAAGCCACATGAGAAGGTTCTCCAGGTCGCAACAGGATGTACGAGTGGAACAGGATCTTCTTACAGTGGACAACAGCATCAACAAATACAACAATCTTACCAAAGGCCCCAGTCTTACCAACCTGTTCAAGAAGAGCCGGAATGATGACCAGAGCAGTTTCTCATCAGGGGCGGATGAGGACCTTTCCCTGGGTTCAGAGTACTCATGGGGAAAGAGGGGCAGTAGTGCTAGTAGCACTGGTACAGACTGTGGTCTCTTGGAGATCAACAGAGTGACAGGGGAGCTAAAGCTCGCCATCGCCTTCAACCACATCACTTCCTGCCTGGAGATCACAATAAACGGCTGCAGAAACCTGGCATATGGAGATATCAAGAGGAAGAAGTGTCACCCGTACGTCAAAGTCTACCTACTGCCGGAGAAGTCTCAGAGCAGCAAACTGAAGACAACTATCAAGAGGAACACAACGGATCCCATTTATAATGACATTTTACAGTGCCAGATGGAGAGCCCCTTGTTGTCCAGGAGTACTCTGCAGGTGTCTGTGTGGCACTCTGCGACCCTGAAGAACAAGGTGTTTCTGGGAGAGGTCCTCGTCCCGCTGGAGGGCTGTATATTTAAGGACAGCACCACCCAGGGCTCCAACTGGTACCCCCTGTGTCCAAAGCCTGAGAGTCCAGAAGGGAATGCAGTAGAGCAGGATACAGCAGGAGAACTGCTGGTCAGAATGAAGTTCACCTCCTTGTCCCAGCCGTCCTGGGTTTGCCACACAGATGCGGTTCATATTGGACCACATGATGTTGGTCAACTGACTGTTCTTGTTACTGGTGCCAAAAATCTGCCCACTAAAGCAAACAACAGTCAGAACACCTATGTGAAAGGGTGCTTGACTCTTCCCGGGTCCAGAGAGCTGGTCCAGAGGACCCCTGTCCTGAAGAAGCCCAGTCCGGCGTGGTCTCACCAGCTGCTCTTCAGCAGAGTCACGCCCTATGACCTCCAGATCTGCACTCTGGAACTTGACCTCTGGGACCACGCCCCCTTTACCTTCTCAGACCGCCTCCTGGGCTGGGTCAGAATGGAAGCCGGGTCATCATGGCAACTGGTGCTGCAGACACCCAACATGTGGCATGACTTCAGTTTACCCATGCAAGCCAACATCAACAGCAGGAGAACATGATGTCAGAGTCAACAGGG

Function

GO: NA

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU768676 lncRNA downstream 710 12927877 ~ 12928553 (-) True G674842
TU768737 lncRNA downstream 25770 12902491 ~ 12903493 (-) True G674897
TU768736 lncRNA downstream 26048 12902491 ~ 12903215 (-) False G674897
TU768715 lncRNA downstream 57528 12870556 ~ 12871735 (-) True G674877
TU768652 lncRNA downstream 105115 12782905 ~ 12824148 (-) True G674820
TU768839 lncRNA upstream 176193 13119328 ~ 13120250 (-) True G674995
TU768881 lncRNA upstream 239466 13182601 ~ 13182928 (-) True G675036
TU768889 lncRNA upstream 245845 13188980 ~ 13189359 (-) True G675044
TU768891 lncRNA upstream 247643 13190778 ~ 13191002 (-) True G675046
TU768901 lncRNA upstream 256501 13199636 ~ 13199905 (-) True G675053
XM_036986823.1 mRNA downstream 221864 12697506 ~ 12707399 (-) False ints7
XM_036984801.1 mRNA downstream 231940 12615879 ~ 12697323 (-) False lpgat1
XM_021611564.2 mRNA downstream 318448 12604696 ~ 12610815 (-) True nek2
NM_001124528.1 mRNA downstream 327245 12592682 ~ 12602018 (-) True slc30a1a
XM_021611563.2 mRNA downstream 377137 12541870 ~ 12552126 (-) True rd3
XM_021611574.2 mRNA upstream 8142 12951277 ~ 12999904 (-) True enpp1
XR_005052779.1 mRNA upstream 216330 13159465 ~ 13164697 (-) True LOC110529421
XM_021611580.2 mRNA upstream 377320 13320455 ~ 13331256 (-) False LOC110529423
XM_036984806.1 mRNA upstream 377320 13320455 ~ 13331260 (-) True LOC110529423
XM_021611587.2 mRNA upstream 432407 13375542 ~ 13384455 (-) False LOC110529426
TU768544 other downstream 231940 12615880 ~ 12697323 (-) True lpgat1
TU767753 other downstream 645043 12283837 ~ 12284220 (-) True G674015
TU767588 other downstream 787269 12140370 ~ 12141994 (-) True G673867
TU767583 other downstream 903521 12018616 ~ 12025742 (-) True G673863
TU767510 other downstream 938819 11985475 ~ 11990444 (-) True LOC110529377
TU769232 other upstream 431804 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other upstream 431804 13374939 ~ 13378281 (-) True LOC110529426
TU769335 other upstream 540958 13484093 ~ 13484934 (-) True G675413
TU769337 other upstream 542544 13485679 ~ 13486137 (-) True G675415
TU769793 other upstream 1040491 13983626 ~ 13986108 (-) False G675834

Expression Profile