RNA id: XR_005052779.1


Basic Information

Item Value
RNA id XR_005052779.1
length 2878
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110529421
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 13159465 ~ 13164697 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTCCGACGGGTTGCTTCTTCTTGTCATTCAGTCCGAAGGACTGTCGTTTTTGTTCCCGAAAAACGACCTTTTAGACACCTACGATTATAATGTATCAGGGAACAGGTCGTATTCATGGGTGAgatagactatatatatatatatatatatatatatatatatagactatCTTAGCTGGTATTCCTCCTGGCATGACTACTCCTGCAGTTGCTGAAGACCTTGATGCCAACTTTAGTAGTACAGAGCCGGTAGACTCTGGAATAAGCTCAAACTCAACATCATCTGACTTTGAAACAAGCCAGGATAGTCAAAGGAGACTTGCAGTACATACACATCTTCTACAAGAGGTCGAAGCAGTGGGTGGTGAAGAACATAGCACCAAAGCCTGCTAAACCAGCTGCTATTACCCAACACAATAACACATTCTGGAACCTGCCTGGAACATTCAACCAACACAACATCCATATTCAGTTAGACTGATATTGTAGTATAATATAGAATGCCTagtattgtcacaccctgatctgtttcacctgtctttgtgcttgtctccaccccactccaggtgTCGGTCATCTtaccattatcccctgtgtatttatacctgtgttctctgtttgtctgttgccaatccgtcttgtcttgtcaggtcttaccagtgtTCTTTCCCACCTTCCTGTTTCTCTAGTTCTGTTTCCAGGTTTTTCccagttctgaccattctgcctgccctgaccccgagcctgcctgccgtcctgtacctgcctgactctgacctgatcacGAACATCTGCCTGCcctcgacctgccctttgcctTCCCTGTGTTTCTACTAAATCatctgagaactgtactatcctcctcccgtgtctgcatctgggtcatatcctgagtcgtgatagtacgaactgaccatgactgacccagcagactcgaaCCAGCTCTGCAACGCCGTCTCCTTccagggagccaccattggaagacacaagGAGTTACTTCAGCGTCTTATGGAGGATTCCAGACCTTGATGGAATGCTAAGACCGTGCCTTCAACACATTACTGGAGCAATTCCGTGGATTGTATGTGAGGCAGCCCGCCACTACAGTAACCCCCCAGATTGTGAATTATCCCGCTACCAGCAGCGTTTCTCTCTATTCTACCCTGGCTTCCCAAGAATCCCTCTTACCTTTTACAGAGCACTATGCTAGAGATCCCGGATCCTGCCGGGCGTTTTTCTCCCAGTATTCTCTCATCTTTGAGCTGCAGCCCTCTTAATTTCTCTCGGATTGCTCGAGGCTAGCGTATGTGATATTGCTGATGACCGGGAGGACTCTTGCCTGGGCTACggcggtgtgggagcaacaatccaccGTTTGTCTCAGATTGAAGGAGTTTGTGGTGTTCACGGGTTGTCGGAGATGATTAAAGACGAGCTCGCAGCCCAGGAGCTGCTTCTGGATGTCGACTCCCTCAATGCCTTGACCATTCCCATAGCCGATGGGCGGCTATGGGaattgtaggagggagagggagtctGTTCCCTGTCGCCGACACTCGATTTCCACCTTGCCTCCAAGGAATCCCGGAAATCCCCAAAGCCCACATTTCCGAGTGGAACCGATGTCGGCCGAAGTCTCTCGGAGGTCACCAAGGGTTGTCGAGTCGTCTCTTCCGGAGCCCATGCAACTGGGCAGTGCTAGATTGTCTCCTGCTGAGCGCTTACACAGACTTAACATCCACTTTTTTTATCTACCTGTCCATTAAAGAACCAGGCTCATCAAGAAGGTACTAGTATGAGTACGCTGGTGAGCTGTACGGGGAGTTTCCCATCTTCCATTGCTCATACCCCTCTCCATGCTACCCTGTTGTGGAATGACCGGTCCAAATCTCTCTGGGTGCTCATagactctggggccgatgagagcTTTATAGACGCTACTCTGGTGTCAGAGCTGGGAATCTCCAcacaacccctctccattcccatgaaCGTCAGAGCGTTGGATGGACGCTATATTGGCAGAGTCACCCACACTACGTGTCCCGTTAACCTGAGCGCTTCGGTGAGTTTATGCAGTTCCTGCCCATCGAATCCCCTCATGCACCCAGAGGCACAATCCCCTGATCGACTGGGCTACTGGTTTATATCCTGGGTTGGAGCATGTTTTGCCATGGGCATTGCCTGAAGTTGGCATTGCCTGAAGTTGGCGCTGCCTGCCCTGGGATGTCTTCCTAAGGGCTTGGGAAAAGCCCTGGATCTCTCCGCCATTCCagcggagtaccaggacctccggaaGGTTTTCAGCAAGAGCCGTGCCACCACGCTTCCTCTGCATCGgccctatgacagtgccacgacCTTCTCCCGGGCACTACACTGCCTCTGGGTGGCTTTATTTCCCTGTCAGGTCCGGAGAACAAGGCGATGGTGACGTATATTGAGGACTCCCTGGCTGCAGTGGGGTATCTGTGCTTCTGCCTCCCCACCGGTACATGGTTCTTCTTtttggagaagaaggacaaaaccctgTGTCTATGTATCGACTACCGGGGCCTGAATGACATCACGGTTAAAAAAACGTTACCTGCTTCGACTCATCGCATCGGCTTTCGAACCTCTCCAGGGGCCTACCATCTTCTCCAAGTTGGACCTCCGGAATGCCTACCATCTTGTACGGGTCCGGGAAGGGGATGAGTAGAAGACCGCCTTTAACATGGCTAGCGGGCACTACGAATACCTAGTGATGCTGTTCGGACTGACCaacgctcctgctgtgttccaagacaaatcattacaaacagtaaccagcaaAGTAGAAGAGTtgcacaagtcagaaatagagataaaattaatcacttacctttgatgatcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU768839 lncRNA downstream 39215 13119328 ~ 13120250 (-) True G674995
TU768676 lncRNA downstream 230912 12927877 ~ 12928553 (-) True G674842
TU768737 lncRNA downstream 255972 12902491 ~ 12903493 (-) True G674897
TU768736 lncRNA downstream 256250 12902491 ~ 12903215 (-) False G674897
TU768715 lncRNA downstream 287730 12870556 ~ 12871735 (-) True G674877
TU768881 lncRNA upstream 17904 13182601 ~ 13182928 (-) True G675036
TU768889 lncRNA upstream 24283 13188980 ~ 13189359 (-) True G675044
TU768891 lncRNA upstream 26081 13190778 ~ 13191002 (-) True G675046
TU768901 lncRNA upstream 34939 13199636 ~ 13199905 (-) True G675053
TU768896 lncRNA upstream 39028 13203725 ~ 13205348 (-) True G675049
XM_021611574.2 mRNA downstream 159561 12951277 ~ 12999904 (-) True enpp1
XM_036986824.1 mRNA downstream 216330 12929263 ~ 12943135 (-) True sytl3
XM_036986823.1 mRNA downstream 452066 12697506 ~ 12707399 (-) False ints7
XM_036984801.1 mRNA downstream 462142 12615879 ~ 12697323 (-) False lpgat1
XM_021611564.2 mRNA downstream 548650 12604696 ~ 12610815 (-) True nek2
XM_021611580.2 mRNA upstream 155758 13320455 ~ 13331256 (-) False LOC110529423
XM_036984806.1 mRNA upstream 155758 13320455 ~ 13331260 (-) True LOC110529423
XM_021611587.2 mRNA upstream 210845 13375542 ~ 13384455 (-) False LOC110529426
XM_021611598.2 mRNA upstream 333321 13498018 ~ 13509334 (-) False tmem151ba
NM_001124231.1 mRNA upstream 387551 13552248 ~ 13558656 (-) False hsp90ab1
TU768544 other downstream 462142 12615880 ~ 12697323 (-) True lpgat1
TU767753 other downstream 875245 12283837 ~ 12284220 (-) True G674015
TU767588 other downstream 1017471 12140370 ~ 12141994 (-) True G673867
TU767583 other downstream 1133723 12018616 ~ 12025742 (-) True G673863
TU767510 other downstream 1169021 11985475 ~ 11990444 (-) True LOC110529377
TU769232 other upstream 210242 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other upstream 210242 13374939 ~ 13378281 (-) True LOC110529426
TU769335 other upstream 319396 13484093 ~ 13484934 (-) True G675413
TU769337 other upstream 320982 13485679 ~ 13486137 (-) True G675415
TU769793 other upstream 818929 13983626 ~ 13986108 (-) False G675834

Expression Profile