RNA id: XM_021611580.2


Basic Information

Item Value
RNA id XM_021611580.2
length 2147
RNA type mRNA
GC content 0.56
exon number 4
gene id LOC110529423
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 13320455 ~ 13331260 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTAACACCCGCATCTGAACTCCCACCCACTACGGGGTTGGCTCTTGCTGCGCTCTCACTGTTCAAAACGAATGCATTTAATATTAATGAACTCGTGTATTGGCTCTTACCCGTGTCAATCCTAAAGTGCTTCTTCACTAGGTTGGCTGACCCCTTGTATATTATTACTGAGGACCAGGCTAAAAGTAAAAATGTTGCGGATCCTCGGCACTGGGACAGGCTGAATGGAGTCAACGTTGAGCGCAAATAAAATCATTCTACATTCACCCGGAGCGCACAAAATATTGTTTTACAAAAATACGGGCATCTTGTAGTTCTCCGTAGACGTCCCGACCCTCAGCCTCCACATGCCTCCATCTCCCCTTGACGACAGAATTGTGGTGGCGCTGCCAAGGCCGATCCGACCTCAGGAACTCCGACTGCGCCTGGACACCAGCTACCTGGACACCAGCTACCTGGACACCAGCTACCTGGACACTACTGTCACCAGCCCTGTCAGCAAGACAACCGTCATCAGCACAACGGTGGTGAAGATCCGGGCGACCAACCTCACTTATATGCCCTCATCTAACGGCTCCACGCGCTCCCTGTCGTGTGGATGCACCAGTGCCAGCTGCTGCTCGGTCACCACCTACGAGAAGGACAGCCAGCACAACCAGCGCCAGCAGCAGAGCCACGTCAGCCAGGTGAGCGCCAGCAGCCCCAACCTCAGCTATGCTGGACCCGCCTCCCCCAACCCCATAGTCACGGGCATGGGCATGATACACCATGAGGCCTTCAGCGACCCTAGTCTCACCTCTGGCCCAACCAAGGCTCTAGGGTCCACTGTCCGGGTCATCCACCCCAATGAGCTGGCCAAGCGGATGGCCAGGTGCCCCATGGGCCACCCGGTCGGGCCGGTGCCGGTCATCATCGACTGCCGGCCCTTCATGGACTACAACAAGAGCCACATCCAGGGTGCAGTGCACATCAACTGTTCGGACAAGATCAGCCGGCGACGGCTGCAGCAGGGCAAGATCACCGTGCTGGACCTGCTCTCGTGCCGTGAGTCCTCCGGCAAGGACTCCTTTAAGGGCATCTTCTCCAAAGAGATTGTGGTGTACGACGAGAGTACAATGGATCCCCAGAGGGTGACCTCCTCACAGCCCCTTCATGTGGTCCTGGATTCGctgaagagggagggaaaggaccCCATTGTTCTCAAAGGGGGCCTCAGCTGCTTCAGACAGAACCACCAGAACCTGTGTGAccactccctccacctccacgAAAGCCTGGACGCCGGCATAGGCGTCAGCGGGGCCTCCGGCCACACGGGGGCACTACCTCACTCCATGTCCCTGCCCTCCACGCCGGACATCGAGGATGCCGAGCTGACTCCCATCCTGCCCTTCCTGTACCTGGGCAACGAGCACGACGCGCAGGACGCCCACAGGCTACAGCGCTACAACATCGGCTTTGTACTCAACGTCACCACCCACCTGCCGCTCTACCACTATGACACAGGCCTGTTCAGCTACAAGCGGCTGCCAGCCACCGACAGCAACAAGCAGAACTTGAGGCAGTACTTTGAGGAGGCGTTTGAATTCATTGagGAAGCACGGCAAGCGGACATGGGCCTCTTGATCCACTGCCAGGCAGGCGTGTCTCGCTCGGCCACCATCGTCATTGCCTACCTGATGAAGCACACCTGGATGACCATGACTGACGCTTACAAGTTTGTCAAGACCCGGCGGCCCATCATCTCCCCCAACCTCAACTTCATGGGCCAACTGCTGGAGTTTGAGGAGGACCTGAACAACGGCATCACACCACGCATCCTCATGCCAAAGCTCATCGGTGTGGAGACCATGGTTTAGGAGGAAACCTGCCATTCCTGGTTTAGGAGGACATCCCACTCACTCTACGGGCTACTCTTGACAGGCTGATTCTGAGAGCAAAATCACTTTATTTCAGAATCTCCTAGTCATGCTCTTCTGGGACTGTCACAGGAGTGCCAAGGTTCTGGGTCAACGGCGATGAGAAACACCCCAGAATACCTGCTGTTCCGAACTGGCTGGCTTCCTGGAGGAACAAGAGTGTTGGGGAGAGAAAACGGTCAGTGGGAAGCTGTCGTGCTTGACCATGGAGGAGCAAAAACATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU769027 lncRNA downstream 19750 13299892 ~ 13300705 (-) True G675157
TU769021 lncRNA downstream 25621 13292236 ~ 13294834 (-) True G675154
TU769014 lncRNA downstream 43983 13276265 ~ 13276472 (-) True G675151
TU768960 lncRNA downstream 57798 13262446 ~ 13262657 (-) True G675111
TU768959 lncRNA downstream 58373 13261854 ~ 13262082 (-) True G675110
TU769045 lncRNA upstream 1432 13332688 ~ 13332904 (-) True G675174
TU769268 lncRNA upstream 27364 13358620 ~ 13359153 (-) True G675351
TU769270 lncRNA upstream 39612 13370868 ~ 13371324 (-) True G675353
TU769231 lncRNA upstream 41774 13373030 ~ 13451428 (-) False LOC110529426
TU769278 lncRNA upstream 71183 13402439 ~ 13403248 (-) True G675360
XR_005052779.1 mRNA downstream 155758 13159465 ~ 13164697 (-) True LOC110529421
XM_021611574.2 mRNA downstream 320551 12951277 ~ 12999904 (-) True enpp1
XM_036986824.1 mRNA downstream 377320 12929263 ~ 12943135 (-) True sytl3
XM_036986823.1 mRNA downstream 613056 12697506 ~ 12707399 (-) False ints7
XM_036984801.1 mRNA downstream 623132 12615879 ~ 12697323 (-) False lpgat1
XM_021611587.2 mRNA upstream 44286 13375542 ~ 13384455 (-) False LOC110529426
XM_021611598.2 mRNA upstream 166762 13498018 ~ 13509334 (-) False tmem151ba
NM_001124231.1 mRNA upstream 220992 13552248 ~ 13558656 (-) False hsp90ab1
XM_021611214.2 mRNA upstream 221859 13553115 ~ 13558751 (-) True hsp90ab1
XM_021611605.2 mRNA upstream 267120 13598376 ~ 13601561 (-) True LOC110529434
TU768544 other downstream 623132 12615880 ~ 12697323 (-) True lpgat1
TU767753 other downstream 1036235 12283837 ~ 12284220 (-) True G674015
TU767588 other downstream 1178461 12140370 ~ 12141994 (-) True G673867
TU767583 other downstream 1294713 12018616 ~ 12025742 (-) True G673863
TU767510 other downstream 1330011 11985475 ~ 11990444 (-) True LOC110529377
TU769232 other upstream 43683 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other upstream 43683 13374939 ~ 13378281 (-) True LOC110529426
TU769335 other upstream 152837 13484093 ~ 13484934 (-) True G675413
TU769337 other upstream 154423 13485679 ~ 13486137 (-) True G675415
TU769793 other upstream 652370 13983626 ~ 13986108 (-) False G675834

Expression Profile