RNA id: XM_021611587.2


Basic Information

Item Value
RNA id XM_021611587.2
length 2713
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110529426
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 13373030 ~ 13451428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACACCTGGCTACCCCCAAACATCCATTATTCATTGGTTTCAATTGCATTGATAGTAAAAATCTTCATATTGtgttagactgctgcgccactcgggagacctaaggcactgcatctcagtgctagaggcatcactacagaccctgtttcgatcccgggctgtatcacaaccggccacgATCGAGAGTCCCGAGTCCCGtaggacggtgcacaattggcccagcgtcgtctgggttaggggagggtttggccggggtaggccgtcattgtgaaataagaatttgttattactgatttgcctagttaaaaaaaaaagagtaaaaACATTACCATCTACTGGACAGATAATGTAACTGCCTTTTGGGACATAATTCCAATGCATTTCAAACATCGTGATAAAACAAAAAGTAACCAGAAACTGTGATGCCTCAGCTTAACATGGACTTTCAGATGAGTATGATGGTGTCAATCAAGAGATGCACAGCTACTTCCGCCAAGCCTCTGTGAACCGGAAGGATATCATTAAACTTCCTGGGGTCTGGGATCCTTTTGTTCTGAGTTACATTAATATGCTGGAATTCTACAACGATCACGAGGGAACTGTGAAGGTTCTGAATGACTATGCCTATGACATCAGTTTGCCCCCCAATGCCCATGTCTACCTCTACCGGTACATGAAGAAATGCAACCACCCATCAAATAAACTGCTCAGTGCTCAAGCCTTAGATCCTGCAAACATTGGTCCCAAGTCACGAGTTAATGCTGGTATACAGTTCTCTTCTGCTACAGTCCGAGAGAGTGATCTTCAGAAGGCTCTAGGTGTTGTTCTGGATCTCCTGGACTTATCCAGTTGGAGGAGAAACTTGGATGTCTGGAACCATTTGATGACCATCGTGAAGAGGCTGAGACccagAAAACAATGGCTGAAGATTGTTGCAGAGGAGTTGGTGAACAGAATGGACTGGTGGCTAGCAATGCACTTCACAACATTCCTGGCCAGGAGAGACTTGGCAATGAATGGGGTGCTACTGGAAGTGAAGTGCTTTGTGCTTGGAGCCTTTTGTCCTCGCTATGCCTTCATGTACCGTGGTGTAGGTAAGGACACCCAAAAATAAGTTACTTCCGAGGCGCAGAAGACTAGGTCAGAGAGGtcagagaggtcagagaaggataaGGAATCCAAGATGGCTAAGGCTCAGAAGAGAATTCGGAAAGCAAAGCTGACTTTGAGAAAGTGTCTCGGAATGCTGCTGGGCGCATCGGCGAGAACAGAAACGCCTGATCATGGCAGACAACCTCCTCATGTAGGAAAAATCATGGCAGACATAACCTCCTCATGGAGGAAAAATCATGGCAGACATAACCTCCTCATGGAGGAAAAATCATGGCAGACATAACCTCCTCATGGAGGAAAAATCATGGCAGACATAACCTCCTCATGGAGGAAAAATCATGGCAGACATAACCTCCTCATGGAGGAAAAATCATGGCAGACATAACCTCCTCATGGAGCAAAAATCATGGCAGACATAACCTCCTCATGGAGGAAAAATCATGGCAGACATAACCTCCTCATGTGGTCATCGGGTCATACTCTCTCCCCTTCCATGACAGCTGCTCCAACTACACCCCCTCACTGCAGGCCTCACTCTCCTTGCATTGCTTTACTTCTCAAGTTCTACGATTGTCCACCAGGGAGGGCTCACACGATGGCTAAGTTTTGAGTCATTCTGAATGCTGCTGAGCCAGTAACTGAGAGCTGTGTTCACTGTGGTAGTTCGTAGGGAAAAAAGGAGGCTGGGTATGCTGCAGTATTAAGTCTAGGACACGGTACACAGCTCTCCCAACGGGTAGATCGCAGCCAACATGCATGAGTAGCTCACCAAGcaattctgaaagtacatgcaTGTTTTTCATGTGTTCCCATCGCAAACTTTCATAAACAAGCTCCTGGCTACTATTCAACCAAAACCACATTGACATTATCCTacccctggttagccactattggcttaaaaagccCAAATTAACACTAAATCTGCCAATTTATTTCTGGCAATATTTCCATTTGCCTCAGTCTGTCTGCTTGGTACGTGCATTTGTCTATCACTCAGTATGCTGCCAGTTAGCCGTGCTAGTAATGATAACCATCTTGTGGGTAGACAGACTTTCTGCAAAAACTCAATTAAATGGTAACTGCAAAGCAGGCTTGCCTGACGGAAAGATATGATTATTTTTTATCAATTGGGTGGCCATCCTTTTGCAAACTCTACCATAACGTGCTGCAGCCGTAGGCCTAACAAACATCACTACACTGACATATTCCCCACTTTCTGAATGCGCAATTAAAGGGGAGTTGCACATGAAAATtgaaatttttatttttatttttcagacTTCAATTGCTCTTCTGTGATTTTAAATTCTGAAATTTCCTTCCCCAATtacattttctgtcaagatagCAACTCCACCCCCTTCAGCAGTTCTATCTACTGtagagagagcctgcagagttctgtcatactatccaggtttgtgcccaaacagttcgagcttctactttctCGCCAGAAATGAGTCCCTCGCTgttgctgcttgttatagacccctcctcagctctcagctgtgccctggacatcatatgtgaattgattgcccccatttatcgtcagagttcgtactgttaggtgacctaaactgggatatgctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU769270 lncRNA downstream 4218 13370868 ~ 13371324 (-) True G675353
TU769268 lncRNA downstream 16389 13358620 ~ 13359153 (-) True G675351
TU769045 lncRNA downstream 42638 13332688 ~ 13332904 (-) True G675174
TU769027 lncRNA downstream 74837 13299892 ~ 13300705 (-) True G675157
TU769021 lncRNA downstream 80708 13292236 ~ 13294834 (-) True G675154
TU769278 lncRNA upstream 17984 13402439 ~ 13403248 (-) True G675360
TU769245 lncRNA upstream 25293 13409748 ~ 13415280 (-) True G675337
TU769303 lncRNA upstream 38626 13423081 ~ 13423661 (-) True G675385
TU769336 lncRNA upstream 100594 13485049 ~ 13485449 (-) True G675414
TU769338 lncRNA upstream 101804 13486259 ~ 13486787 (-) True G675416
XM_036984806.1 mRNA downstream 44282 13320455 ~ 13331260 (-) True LOC110529423
XM_021611580.2 mRNA downstream 44286 13320455 ~ 13331256 (-) False LOC110529423
XR_005052779.1 mRNA downstream 210845 13159465 ~ 13164697 (-) True LOC110529421
XM_021611574.2 mRNA downstream 375638 12951277 ~ 12999904 (-) True enpp1
XM_036986824.1 mRNA downstream 432407 12929263 ~ 12943135 (-) True sytl3
XM_021611598.2 mRNA upstream 113563 13498018 ~ 13509334 (-) False tmem151ba
NM_001124231.1 mRNA upstream 167793 13552248 ~ 13558656 (-) False hsp90ab1
XM_021611214.2 mRNA upstream 168660 13553115 ~ 13558751 (-) True hsp90ab1
XM_021611605.2 mRNA upstream 213921 13598376 ~ 13601561 (-) True LOC110529434
XM_021611607.2 mRNA upstream 242306 13626761 ~ 13632855 (-) False LOC110529435
TU768544 other downstream 678219 12615880 ~ 12697323 (-) True lpgat1
TU767753 other downstream 1091322 12283837 ~ 12284220 (-) True G674015
TU767588 other downstream 1233548 12140370 ~ 12141994 (-) True G673867
TU767583 other downstream 1349800 12018616 ~ 12025742 (-) True G673863
TU767510 other downstream 1385098 11985475 ~ 11990444 (-) True LOC110529377
TU769335 other upstream 99638 13484093 ~ 13484934 (-) True G675413
TU769337 other upstream 101224 13485679 ~ 13486137 (-) True G675415
TU769793 other upstream 599171 13983626 ~ 13986108 (-) False G675834
TU769790 other upstream 599389 13983844 ~ 13986108 (-) True G675834
TU770045 other upstream 822532 14206987 ~ 14207625 (-) True G676077

Expression Profile