RNA id: NM_001124231.1


Basic Information

Item Value
RNA id NM_001124231.1
length 2655
RNA type mRNA
GC content 0.51
exon number 12
gene id hsp90ab1
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 13552248 ~ 13558751 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGACTTGAGATATTGGCAGCATTTTATTCAAGAGAAGTCAACGGAACAAATAAAGATGCCTGAAGAAATGCGCCAAGAGGAGGAGGCTGAGACCTTTGCCTTCCAGGCAGAGATCGCTCAGCTCATGTCCCTGATCATCAACACCTTTTATTCCAACAAGGAAATCTTCCTCAGGGAGTTGATTTCCAATGCATCTGATGCTTTGGACAAAATCCGATACGAAAGTCTGACGGACCCCACCAAGCTGGACAACGGCAAGGAACTGAAGATTGACGTCATCCCCAACGTGGAGGAGCGCACCCTGACCCTAATCGACACTGGAATTGGCATGACCAAAGCTGACCTCATCAACAACCTGGGAACCATCGCGAAGTCTGGCACCAAGGCCTTCATGGAGGCCCTGCAGGCTGGAGCTGATATCTCCATGATTGGGCAGTTTGGCGTGGGTTTCTACTCTGCCTACCTGGTGGCCGAGAGGGTGACTGTCATCACTAAGCACAACGATGATGAGCAGTACATCTGGGAGTCCTCAGCCGGAGGCTCCTTCACAGTCAAGGTCGACACTGGGGAGCCCATGTTGCGTGGAACTAAGGTGATTCTGCACATGAAGGAGGACCAGACGGAGTATGTTGAGGAGAAGAGGGTCAAGGAGGTGGTCAAGAAGCACTCTCAGTTCATTGGATATCCCATCACCCTCTTCGTTGAGAAGGAGCGTGAAAAGGAGATCAGTGACGATGAGgccgaggaggaggagaaggccgagaaggaggagaaagaggagaaggaggcagAGGACAAGCCCAAGATTGAGGATGTGGGCTCTGATGACGAGGAGGACTCCAAAGACAAGGACAAGAAAAAGACCAAGAAGATCAAGGAGAAGTACATTGACCAGGAGGAGCTGAACAAGACCAAGCCCATTTGGACCAGAAACCCTGACGACATCACCATGGAGGAGTACGGAGAGTTCTACAAGAGCCTGACCAATGACTGGGAGGAACACCTGGCTGTCAAGCACTTTTCAGTGGAGGGCCAGCTGGAGTTCCGTGCTCTCCTCTTTATCCCCCGTCGCGCACCCTTCGACCTCTTtgagaacaagaagaagaagaacaacatCAAGCTGTATGTCAGGAGGGTCTTCATCATGGACAGCTGTGAGGAGCTCATCCCGGAGTACCTGAACTTTGTGCGTGGTGTGGTAGACTCTGAGGATCTCCCCCTGAACATCTCCCGAGAGATGCTGCAGCAGAGCAAGATCCTCAAGGTGATCCGCAAGAACATCGTCAAGAAGTGTATGGAGCTGTTCGGCGAgctggcagaggacagggagaactACAACAAGTTCTATGATGGCTTCTCCAAGAACCTCAAGCTGGGCATCCATGAGGACTCCCAGAACCGCAAGAAGCTGTCAGAGCTGCTGCGCTACCACAGCTCTCAGTCAGGAGACGAGCTGACCTCCCTCACGGAGTACCTCACCCGCATGAAGGACAACCAGAAATCCATCTATTACATCACTGgtgAGAGCAAGGACCAGGTGGCCAACTCTGCTTTTGTGGAGCGTGTGCGCAAGCGAGGATTCGAGGTCCTGTACATGACGGAGCCCATTGACGAGTACTGTGTCCAGCAGCTGAAGGAGTTTGACGGAAAGACCCTGGTCTCCGTGACCAAGGAGGGCCTGGAGCTGCCGGAGGACGAGGAGGAAAAGAAGAAGATGGATGAGGACAAGACAAAGTTTGAGAACCTCTGCAAGCTCATGAAGGAGATCCTGGACAAGAAAGTAGAGAAGGTGACCGTGTCAAACAGGCTGGTGTCGTCGCCCTGCTGCATTGTGACCAGCACGTATGGCTGGACGGCCAACATGGAGAGGATCATGAAGGCGCAGGCCCTGAGGGACAACTCCACCATGGGCTACATGATGGCCAAGAAACACCTGGAGATCAACCCAGACCACCCCATCGTGGAGACCCTGAGGCAGAAGGCTGACCTGGACAAGAACGACAAGGCGGTGAAGGACCTGGTAATCCTGCTTTTCGAGAccgctctgctctcctctggctTCAGCCTGGATGACCCTCAAACTCACTCCAACCGTATCTACAGGATGATCAAGCTGGGCCTGGGAATCGATGACGACGAAGTGATCCCTGAGGAGCCCACCTCCGCGCCTGCCCCAGATGAGATCCCACCTCTAGAGGGAGACGATGATGCATCACGCATGGAGGAAGTGGATTAAATGCCACTTAAAATCTACTCCTTATATAGCCTCACGTTTTCCAATCGAACATGTTTATTTGCCCTTTTTTAAATGGGTAACCTGGTCAGTGTCCTTTATGGTATAAAAAGTCTTAATTCTAGAAATGCGGTTCATTTGTTGTACAAGCTGTATGTAATAGTTAATGGTGGGCAACGCATCTGGAAAAAACAGTACCCTGTTGCACTGAGTTTTAAATATTGGACTGGTAGATGTGTGTGAACAATGGGAAATGAAACATTCCATTACTGACACGGTGTTGGGTTGGTTCTCATGTGCAACATAACATGCACGCTGCATGGAGAGTTGACTGCAAGGTTCCTTTGCCTGAGTTCAGACCTGTCTGTATTCAGTCTTTGTTTTGCAGAAATTAAAAGATGTAATACCTTAAACGTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU769359 lncRNA downstream 2989 13549036 ~ 13549259 (-) True G675434
TU769288 lncRNA downstream 3880 13541048 ~ 13548368 (-) True G675370
TU769357 lncRNA downstream 13254 13538784 ~ 13538994 (-) True G675432
TU769355 lncRNA downstream 14493 13535414 ~ 13537755 (-) True G675431
TU769356 lncRNA downstream 15068 13535173 ~ 13537180 (-) False G675431
TU769299 lncRNA upstream 1231 13559887 ~ 13560326 (-) True G675381
TU769360 lncRNA upstream 3235 13561891 ~ 13562100 (-) True G675435
TU769364 lncRNA upstream 11909 13570565 ~ 13570814 (-) True G675439
TU769365 lncRNA upstream 12967 13571623 ~ 13572328 (-) True G675440
TU769367 lncRNA upstream 19951 13578607 ~ 13578928 (-) True G675442
XM_021611598.2 mRNA downstream 42914 13498018 ~ 13509334 (-) False tmem151ba
XM_021611587.2 mRNA downstream 167793 13375542 ~ 13384455 (-) False LOC110529426
XM_036984806.1 mRNA downstream 220988 13320455 ~ 13331260 (-) True LOC110529423
XM_021611580.2 mRNA downstream 220992 13320455 ~ 13331256 (-) False LOC110529423
XR_005052779.1 mRNA downstream 387551 13159465 ~ 13164697 (-) True LOC110529421
XM_021611605.2 mRNA upstream 39720 13598376 ~ 13601561 (-) True LOC110529434
XM_021611607.2 mRNA upstream 68105 13626761 ~ 13632855 (-) False LOC110529435
XM_021611606.2 mRNA upstream 68105 13626761 ~ 13632856 (-) True LOC110529435
XM_036984822.1 mRNA upstream 781844 14340500 ~ 14389518 (-) False LOC110529441
XM_036984821.1 mRNA upstream 781844 14340500 ~ 14392658 (-) False LOC110529441
TU769337 other downstream 66111 13485679 ~ 13486137 (-) True G675415
TU769335 other downstream 67314 13484093 ~ 13484934 (-) True G675413
TU769232 other downstream 153805 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other downstream 173967 13374939 ~ 13378281 (-) True LOC110529426
TU768544 other downstream 854925 12615880 ~ 12697323 (-) True lpgat1
TU769793 other upstream 424970 13983626 ~ 13986108 (-) False G675834
TU769790 other upstream 425188 13983844 ~ 13986108 (-) True G675834
TU770045 other upstream 648331 14206987 ~ 14207625 (-) True G676077
TU770156 other upstream 729193 14287849 ~ 14288345 (-) True G676178
TU770677 other upstream 952934 14511590 ~ 14516528 (-) True G676635

Expression Profile