RNA id: XM_021611607.2


Basic Information

Item Value
RNA id XM_021611607.2
length 3127
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110529435
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 13626761 ~ 13632856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAGGAACATAGCAGCTAACTTGGCTAATCTTgtgagctagctagttaactaggtGGTCTTGCTGTCTATGGTATCTAGGCAGAATCCTGACTTATCAGCCTCTGAAGCTGCTATTGAATCTGATCAATTTCTAAGACTGAAATTGAATCTGATCAGGAATGGAGCTCACTTACTCTGTAAATGTAATCCACAACATATGAACTGTCTCTTATAATTATACACAAATCAGTTATGCAAGCTAACAACCAGTACAGATAACAAGCTAGTATGCTAACAAGACTACATAGCTAACTAGTTAGCTCGTTTGCTTACAAGACTAGCTGAGTTAGCTACAGTGTTACTTGCATGCGATTTGCTGTGTTCTTGGGTGCGGCACGCAGCGTAGGAGAAAGGGCTGCCTGTCGGGCATCGTTCAGGGCTTAAATGTCCACAAGCATGGGTGTGTAGGGCAGACTAAACATCCGAGAATACAAAGAAAGAGGCATCATGGCCGAAATATCTCTGTATCTCACCAACGTGAATGTGTCTTTGGGCCAAACGATGGACGTAGAGAAGatcCCCAGCACAGGGAAGGACTTTGAGAGTGTCGAGCTGGGAGACCTGGAGAAGGGGGATCAGAAAGAAGAGAAAGCCCCACGAAGGATCATCCATTTCTCTAGCGGAGAAACCATGGAAGAATACAGTACagacgaggaggagggggaggacaagGAACCAGAGAAGAAGGACCTACTGTCCCCCCCTTTCGATGCGAACAAGCTGACCTGGGGCCCGTACTTCTGGTTCCATATGTGGAGAGCAGCTACCTCCACTGTTTCAGCTTGTGACTACCTCGGGGAGAGGATGGCCTCGCTCTTTGGAATCACATCGGCCAAATACCAGTACGCCATCGACGAGTATTACAGGATGAGGAAAGAGaaggaggaggaagatgaggacaaCCGGTTATCAGAGGAGGCGGAGCAATACTTTGTTGAGAATCAGGATGAGGAGATCCATGGACCAATGACGGATCAGCCAGAGGGAACCGCTACCACCCCCCATTCCACAGACACCTATCAGGTTGAGAAAGAGGCCAAGGCCACGCCTACTGCCATCAGGGTCCCAGCCATTGTCACGACAACAACCTAACTAACTTCTGGAGAGATGATTATGTTTTttccatgtttgttttgttttaatttGTCAAGGAGGCGGAGGCGCTCTGGGGTCTGTCTCTCTGATAGTGCTGAACGATTAACTGAAATTTTGTGTGCACAttgcacagtttctctagagataaatcagatccagactgaactgtgcgatgtagtacggcgttgtagtttccaacaggccaatattctacatagtttagcgtgtaaaatgtggtaattaactataatacccataatccattgcgcatgTACTTGTCCAGTCTGTTTCTTTTACTGCTTCTACGGAAGAGAGAAGAATGCGAGATTGTGAGGTGATCtagagagcagctgttgcttTGCGGGGTATCTacttgaaaatacatgatctaagtgattgatattGGTAGGAATCACTTGGTATTCAGCCGtcaaaagtatgccttatttacattTTAAGAACTACATTATTAAATAGGGATTTTGTcaagcagcagctctatagataTGACTTGGAATTGAATATAaattaatcaaataaaacaaatgtaatatacacaactgaaatatttgatTAAAGTCACGTGAattaaatgatggttaataagtgatgggccgtcactaccatcatgggacttttattaataGTTGTATTCTGTggtacagcattcaacccacataatgcatattGCATTTAATGTTTGCAAAAATTATTGAAACTGAAATTGAAAACCATAATTATTTTTTAACGATCGAACCGAAACAGAACCGACCTCAAAAaacactaatcgctcagcactactctCTGAGCTCCCATTTGGTTGTGGATATGAAGGAGCCATCTATAAACCTGGGAGTCAGACCTGCTACTGCTTTAGCCCACGCCTCTGTCATGTCATTAATACCAGACTACAAAGAATTATGACAACAAACCGTGAAGGACGATGACAGAGTAGTGACAAAGAAGTTAGTCGGTTGAAGCAGAAGCTGATCCGACTACCAGGGCTAGCCTTCAGTGATCCGACTACCAGGGCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGGCTATCCTTCAGTGATCCGACTACCAGGGCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGGCTAGCATTCAGTGATCCGACTACCAGGGCTAGCCTTCAGTGATCCGACTACCAGGGCTAGCCTTCAGTGGGCAGTGCCACTGTCCTTTCTGTAGTCCTATAGTACAGGCACAGTGTGGTACGGTAGTAGTACTGTGTCGTTTAACTATGTGTCTCCAGTGGCCTTACCCCCAACTGGAGGCTGGTCCTAACATTCCAACCTCGTGTCTATCTATCTGGTGCCTCTGAAGGGCTGTGTTTTTTTTACCTAAACCACAGAGCCaagtagtagcctaaaccttAATGCACTCGAACACAGGAAGCCTTCCTCCTTTATACACTACTACTAGCATGCCACTCACTTTGTTTTAATTTAGACAACATTTGTTGAAATACTTTGTTGAGCACTGACCTAAACATGGTGTGTTGTTCCCCTGTGTAGCATTACTGGCTTGTGGTCACTTGGTGACTTGTAATTTGGAACGTCTTTTCAGGCTGTTGGTGTAGCTGAGATTTTGTAAAGGCAGTATAATCTGTCATATTTGTTTTTACTAGTCCATTGGCCTAATGCACAGTTGCCCTTGTTGTAAAGGAACTTTATGTTAAACTTTTATTTTGATATTcacatatttattattatttttgtattttctgaGCACTTTTTTACAACGTACTTTATGTAACAACACCTTGATAAACTGTTAATAAATATACTTAACTATGCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU769395 lncRNA downstream 12333 13614219 ~ 13614428 (-) True G675463
TU769390 lncRNA downstream 17733 13608564 ~ 13609028 (-) True G675458
TU769382 lncRNA downstream 29243 13597211 ~ 13597518 (-) True G675451
TU769378 lncRNA downstream 29642 13596237 ~ 13597119 (-) True G675449
TU769370 lncRNA downstream 44576 13581882 ~ 13582185 (-) True G675445
TU769451 lncRNA upstream 60805 13693660 ~ 13693868 (-) True G675511
TU769506 lncRNA upstream 83379 13716234 ~ 13719093 (-) True G675556
TU769538 lncRNA upstream 123557 13756412 ~ 13756657 (-) True G675588
TU769602 lncRNA upstream 171727 13804582 ~ 13804807 (-) True G675651
TU769619 lncRNA upstream 189196 13822051 ~ 13822263 (-) True G675668
XM_021611605.2 mRNA downstream 25200 13598376 ~ 13601561 (-) True LOC110529434
XM_021611214.2 mRNA downstream 68010 13553115 ~ 13558751 (-) True hsp90ab1
NM_001124231.1 mRNA downstream 68105 13552248 ~ 13558656 (-) False hsp90ab1
XM_021611598.2 mRNA downstream 117427 13498018 ~ 13509334 (-) False tmem151ba
XM_021611587.2 mRNA downstream 242306 13375542 ~ 13384455 (-) False LOC110529426
XM_036984822.1 mRNA upstream 707645 14340500 ~ 14389518 (-) False LOC110529441
XM_036984821.1 mRNA upstream 707645 14340500 ~ 14392658 (-) False LOC110529441
XM_036984823.1 mRNA upstream 707645 14340500 ~ 14392658 (-) False LOC110529441
XM_036984824.1 mRNA upstream 707645 14340500 ~ 14392658 (-) False LOC110529441
XM_036984825.1 mRNA upstream 707645 14340500 ~ 14392658 (-) False LOC110529441
TU769337 other downstream 140624 13485679 ~ 13486137 (-) True G675415
TU769335 other downstream 141827 13484093 ~ 13484934 (-) True G675413
TU769232 other downstream 228318 13374939 ~ 13398443 (-) False LOC110529426
TU769234 other downstream 248480 13374939 ~ 13378281 (-) True LOC110529426
TU768544 other downstream 929438 12615880 ~ 12697323 (-) True lpgat1
TU769793 other upstream 350771 13983626 ~ 13986108 (-) False G675834
TU769790 other upstream 350989 13983844 ~ 13986108 (-) True G675834
TU770045 other upstream 574132 14206987 ~ 14207625 (-) True G676077
TU770156 other upstream 654994 14287849 ~ 14288345 (-) True G676178
TU770677 other upstream 878735 14511590 ~ 14516528 (-) True G676635

Expression Profile