RNA id: XM_036984825.1


Basic Information

Item Value
RNA id XM_036984825.1
length 7365
RNA type mRNA
GC content 0.53
exon number 28
gene id LOC110529441
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 14340500 ~ 14392658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGCGGGGAGGAAGTCACCCTAGTAAGTGCTGTGTTTTTCTTGTCCACTAAAATGGCTGTTGTCGAGGATGGGGACTAGCCTGTGAGCACTACACGCATATAAGGCGAGGATTGAGAAGACAACACCGAAGTGTGGAACATTTATATTCGTTTTATTAAAAGGTGCTGTGGTGTTGAGGGGAAGTAGCTGCAGCCAtggacaccaccacctccattaAGATGACCACtctggccatccagaacctcttCGGCTACGTGGAGGAGGAGAACCTGGCAGCGCTCAAGGCCCACCTGGACAAGTTCAAGGAGGTGGACGGCAGGAGTGACAATGGTCAGACACCCCTGATGCTGGCTTCGGAGCAGGGCAGTATTGAGATTGTACAGGAGCTCATCAGGAGAGGAGCCAATGTTAACCTGGATGATGTGgaCTGCTGGTCTGCTCTGATCTGTGCTGCTAAGGAAGGCCATGTAGAGGTGGTGAAGGAGCTGTTAGAAAGCAGTGCTTACATAGAGCACCGAGACATGGGAGGCTGGACGGCCCTCATGTGGGCTGCCTATAAAGGCCGCGTGGAGGTAACCGAGGTTCTCCTTGAGAACGGAGCCAACCCCAACACTACTGGGCAGCAATACAGTGTGTACCCCATCATCTGGGCAGCAGGCAGAGGTCATGCTGAGATCGTCCAGGTCTTGCTGGAGAACGGAGCCAAGGTCAACTGCTCTGACAAGtatGGTACCACCCCTCTGATCTGGGCAGCCAGGAAGGGCAATTTTGACTGTGTGATGCACCTGCTGGAGAATGGAGCCGATGTCGACCAGGAGGGGGCGAACTCGATGACAGCTCTGATCGTGGCAGTGAAGGGAGGTTTCCCTGAGGTGGTGAAGGAGCTTCTGAAGAGGAACCCTAACGTCAACATGACAGACAAGGACGGCAACACAGCCCTGATGATCGCTGCCAAGGAGGGCTATACTGAGATAGTACAGGACCTGCTGGATGCTGGCACCTACGTCAACATACCAGACAGGaGTGGAGACACGGTGCTTATCGGAGCAGTGAGAGGAGGACATGTGGAGATAGTGAGGGCTCTGCTGCACAAATATGCTGACATAGACATCAGAGGACAGGACAACAAGACAGCcctgtactgggctgtggagaaAGGCAACGCCACCATGGTGAGAGATATCCTCCAGTGCAACCCCGACACAGAGACCTGCACCAAGGATTTAGAAAGCCCTCTGATCAAAGCTACTAAGATGAGGAACATTGACATAGTGGAGCTTCTGCTGGACAAAGGAGCCAAGGTGTCTGCTGTGGACAAGAGAGGTGACACCCCCCTCCACATTGCCATCCGTGGGCGGAGCCGCAGACTGGCAGAGCTCCTCCTTCGTAACCCTAAAGATGGCCGCCTGCTCTACAGGCCCAACAAGGCCGGCGAGACCCCCTACAACATCGACTGCAGCCACCAGAAGAGCATCCTCACCCAGATCTTTGGAGCCCGACACCTGTCCCCTACTGAGTCTGATGGGGACATGCTGGGTTATGACCTGTACAGCAGTGCCCTGGCTGACATTCTCAGTGAGCCCACCATGCAGCCACCCATCTGTGTGGGCCTGTACGCCCAGTGGGGCAGCGGCAAGTCTTTCTTGCTCAAGAAACTGGAGGATGAGATGAAGACGTTTGCTGGCCAGCAGGTGGAGCCGTTGTTCCAGTTCTCCTGGCTGGTGGGGTTCATGTCACTGCTGCTGTGTGGTTCTGTAGCTCTGGTCCTGGGCTTCACCGTCGACCCCAAGCTAGCCATCGCTGTCTCCCTCAGCCTGCTGGCCTTGCTCTATGTCTGCTTCGtggtggtgtattTCGGCAGTCGTCGAGAGGGTGAGAACTGGAGCTGGGCGTGGGTGATAAGTACCCGCTTGGCCCGACACATCGGTTACCTGGAGCTGCTACTCAAACTGATGTTTGTCAACCCCCCTGACCTGCCAGAGCAGACCACCCGCGCTCTGCCCgttagGTTCCTGTTCACTGACTACAACCGTCTGTCCAGTGTGGGAGGGGAGACCAGCCTGGCAGAGATGATAGCCACCCTGTCTGATGCCTGTGAGAGGGAGTTTGGCTTCATGGCCACCCGCCTCTTCAGGGTCTTCAAGACAGAGGAATCACAAGGGAAGAAGAAGTGGAAGAAAACTTGCTGCGTTCCCTCCTTCGTCATCTTCATCTTCATCCTGGGCTGCCTGATCACTGGCATGGCACTCCTCGCCGTCTTCAAGGTGGATGGGGCCAACCAGACGGTGAATGCCGTGTTGATCGCCATGGCCTGCGCAGTGGGCCTGGCACTGGTGCTTAACTGCCGGACCTGGTGGCAGGTGGCCGACTCGGTGCTCAACTCTCAGAGGAAGAGGCTGCACAGCGCTGCCAACAAGATGCACAAGCTCAAGAGCGAGGGCTTCATGAAGgtGTTGAAGAATGAGGTGGAGCTGATGGCGAGGATGGCTAAGACCATTGATGGCTTCACTCAGAACCAGACGCGTCTGGCTGTCATCATAGACGGCCTGGACTCCTGTGAACAGGACAAAGTACTGCAGATGCTGGATACGGTGAGAGTGCTCTTCTCCAAAGGCCCCTTCATCTCCATCTTCGCCAGCGACCCCCACATCATCATCAAGGCCATCAACCAGAACCTGAACAGCGTGCTCAGGGACTCCAACATCAACGGTCATGACTACATGAGAAACATCGTCCACCTGCCGGTCTTCCTCAACAGCCGGGGGTTGAGCAGCGCCAGAAAGATGTGTGTGGCAGCGCCCGCTAACGGAGACACCGGAAACTCAGACGGTAATCCAAACCATTCAGACgGCTGGCATGAGGAGCTGGATAGGAAGCTATCCCAGCACAGCATCGGGGAGATGACCAAGTTTGGCAGCAAGACAACCCTGAACCGCAGgGACACGTACCGGCGACGTCAGATGCAGAGGACGGTGACAAGGCAGATGTCCTTTGACCTGAGCAAGCTGCTGGTGACAGAAGACTGGTTCAGTGACATCAGCCCCCAGACCATGAGGAGGCTGCTCAACATCGTCTCTGTCACAGGTCGTCTGCTGAGGGCAAATCAGATTATGTTTAACTGGGACCGCCTGGCATCGTGGATCAACCTTACTGAGACGTGGCCCTACAGGACCTCCTGGCTCATCTTGTTCCTGGAGGAGACTGAAGGCATCCCGGACCAGGCCGCCCTCAAGACTATCTACGAGAGGATCTCCAAGAACATTCCCACCACTAAAGACGTGGAGCCCCTGTTGGAGATTGACGGGGATGTGCGTAGCTTCGAGGTGTTCCTCTCCTCTCGGACACCCGTCCTCAGTGCACGCGACATCAAAACCTTCCTACCCTGCACCGTCAACCTCGACCCCAAACTACGAGAGATCATCGCAGACGTGCGTGCTGCCAGGGAACAGATGACCATCAGAGCGGTGACATATCCCAGCCTGCCCCTGCAGGAAGCTGCTCCCCGCCCCACCTCCGTCTACAGCCAGCAGTCAGGCATGTCCGCCtgctccccctccacctccttcaACGGGCACTTCAACCCCCCAGGGCTGGTGTCCCCACCGCCCCACAGCAGCAACTACAGTGGTATGGCTGGCCCCCAGCACCCCTTCTATAACAGGggttcaGCCTCGGTGGTGTCGGGGACCCCGGCCATCCTCCTGAGCTCCATGAACACAGACACAGTGTGTGAACGTGTCAAACATATCGAGGGTATCGACCAGAGCATGCTGGCCCAGTACACTGCCACCATTAAGAagGCTAATGTGAATGGCAGAGTTCTGACCCAGTGCAACATTGATGAGCTGAAGAATGAAATGAAAATGAACTTTGGAGACTGGCAGCTCTTCAGAGGAACCGTGTTGGAGATGCGTCACGTGGAGAGCCAGGTGCTTCATGAGGAGGCTCCCAGTGAGGTGGACAGCAGTGTGGTGGGCCACGGGGAACCGAGGCGCCAGGTCGCTCCGCCCCACGCCGGCACCGCCAACCTCGACGCCAACTCACCCATGTACAGCTTCAACCTGAGCTTTGAGGAACTGAGCAATGTGGGACTGGACGAGCCTCCCAGGCACAGCAACAACACATGGATGGCCCCCACCCACCGCACCCCCAGCATGTCCAGCCTCAACTCCCAGGAGTCGTCCAACGACATCGTCAAGCTGACGGAAAAGCAGCAGTCGGAGTACCGCAACGCCTACCAGGAGTACATCGCCCAGATGGCCACGCTGGAGGTGggcggaggagggggagagaagcccGTCCAGCCCCACCCCAACCAGTTCATGACCTCTGCCAGCTCCGAGGACAAAACCAAGGACAAGGCTACCACCAAGAGAAGCACCTCCAAGCTTCCCGCCGTGGACGCCCCGGACTTCACCACCGCCGAAGCCCCCCTGGACCCCATCACAGAGGAGGACGAGAAGCAGGACCCCCATGGCTCCTCCAAGACCCTGCTCGGACGCAAGGCGCCCGGGTCCAGTGACCGGGGGAGCGGCCTGTTCCAGGGAGCAGCCGACCTCAAGATGAAGACTGGCGGGCTGCCCTACCAGAAGCTCACCAGCGATGACGAGGATTCAGAGAACTCCGACGCTCCTCTCTTGGGGGACGCGAAAAAGCCAGGTGACCCCAAAGCATCCTCCCTGGCTCTGGCTAAGGGTAAAGAATACCTGTCTGACGCCATGCTGGATAAGAAGGATTCGTCTGACTCTGGCATGCGCTCCAACGAGAGCTCGCCCAACCACTCCCTGCAAGACGAGGAGGCTGACCTGTCCCAGCTGGAGCAGGCCAACCTGATCGAGCTGGACCAGGAGGACAGCCAGAGCCGGGCGGCCAGTAAGAGGGGTCTGCCCAGCAGCCTGAGTGGTCTCCAGGACCCAGCTGTGGCCCGCATGTCCATCTGCTCTGAGGACCAGTGCAGCCTGCTGGCCAGCAGCCCCGAAGAGAGCTGGCCATCGTCCAAGAGCTACAACCTCAACCGCACGCCCAGCAACACCACCCTTAACAACAACACCAACGCCCAGCAGCAGGGGAACCAGCAGCGTTGCCAGGGACAGAGGGCTCCAATGGGGTCCACCGACACCACCTGTTCCACCCCTACATCCTCCTCCATCAGCGAGGTTATCATCTCCCCGGGTTCCGGCACCACCAGTACCACCACCAAGCCCGGCCCGCACAACGAGAACGTCCGCGTGGTGCACCTGAAGAGGGGGCTGAACCCCGGGGATCCTCCGGAGATCACCACCGTGTCCTCCGACACTGTCACTTTCGGAGAGGAGCGCGAGAGCATCCTGTGAGCCCCCCCGCCCATCTCATTCCCAGGAGAGCACTTAGTCAGTAGATGTTTGGTGTGGTAATCTGACAATGCATGCGTAGCAAGGTACCGTAGCTAGCTAAATGGGTAAATAAATTATGTTAGTGCACACCAAGCACTAAGTAGATAGCCTTGTTAAACCAGCCTGATCTGGCAACCTCACATTCTGTTACAGGAGAGCGCAGCGGTTAGTCTGGTTTCACCAGGCTACTAAGTAGAGGTAGCTCACTGAGATGTTGTACTCTGTATTTGTATCGTCTAAAGTGAAGTGAAGTGACCTCTACTAACTGTCTTGATATTCTCTAGAGGTGAAGGTAGCTAGCTAcgcacactgtaaaaaaaaataagatcTTTAGATTAACCTAATTTACTTCACCTCtggtaaaaacaacaacattattaTGACAAATATATGATTCAATGCCAACTGTTATATTTCATTATATTTGACATTGTTACCTGTTTATCTCAACACTAAACCTACATTTCCCCTTTGGTTAAACTTAATATAACAAATCCAAAAAATATTTAATGACAATACAACCAATTTTTTTTATCTTGTTCCTAGTTCACTTTTTCATTTGGAATTACCTATCCACATTTATTCTGTGTTACAAGCAATTTAAATCAACAAGCTAAAAAATAAGATGTTTTAAAATAACCAACTGAAAGCCACGCCTCGGCAACTCTTCTGATAGGCTGCCGTCGCTACATTGCCCCTACCGCTATTCAATGTGCATGAGGGGTTGAAAGCAATTTAGAAGCTTTCATTCAAATAAAAAAACTCACCATGATCTGACAAATTCGTTATTGGATTTCAGACAAATTGATAGAACAGGTTGAATTAACCAAAGTGTAAATTTCGATTATTCCAATCAGTAAAAGCACTTAACAGCGCCGTCCCTTTTTTTACAGTATAATTTATAACTTAACTACGTACAGTGACTAACTATCTGTTTATTGTTTTGCACTACAACAAGCATGGTAGCCTgggtgtcagtctgtctgtgccATCTCGCCAACTCCTTGTCATGCCAATGGCTTGACAATGAGCAATGGAGCTGGCaagaacacaaacagatctgggaccaggctacaagcATGCCTCAACAGTGTTAATATTAGCTGCTGCTGCCTATGTGTGTCAACAAGTGATGTAGAGCTTGTGGGTGGGTAAAAGAAGATACCTGGTATAGATGAAGAATGAATGCATATGAACACGTGAGCCAAATGAACAAAATTGTGTGTGGGATCTGTTTTTGTCGCGTATCAGCAAATGACATGGAGGAGAGTCAACTAAACTATTTGTCTCATTGCAAAAGCCACAGGGCTTTTAACTATCTTAccttcctatgggccctggtccaaagtagtgcgctatcggtggaatagggtgccatttgggacgcatctcCTGCCAACACGAACAAAAATGTTGGATAAAAGGGAGGGACGTTGACACTAATATGTTACAATAACAACAATTTAACAACGAGAAGTAATCTTCAGAAAAAGTTATTGGATCGCTGCAAAATTCAGTTGCTGACTCTTCTCCATATGATACATGGGACTGTATGTATGCTGCTTTGTCATGAACAGTGGTTGTAATGTTATTTGGTTTATTACATGTTGTCAGGGCCTGTCTCCTCCCGTAACGTAGTAGAGGCCCCATTTGTGAATCCGATGCcattaaatgtacattttaatTAAGCAGTAATAAAATGTACACTTAATGGCGTCCGATTCACAAATCTGGCTACAGTAAAGATTGTTGTTGCATGCGTACCTAATGAACTGTACATTGCATGCGTAAATTAGTTTGCAAATATCAGTGCAAATGTCAAAGTGCTCTCCTATGTGTTGCATGCACTGTAATGTTGTATGTGTCTTAACCTGTCGGATGATAACCACGTGGGAGAAGAACACGAGATATTCTATCTATGAAGGGAAAGAAGTGAATGGTGCCGTCAGACATTATCTGACTGAAAAATAAAACCTGGATGTTGACCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU770575 lncRNA downstream 447 14338632 ~ 14340053 (-) True G676544
TU770562 lncRNA downstream 21325 14318802 ~ 14319175 (-) True G676534
TU770173 lncRNA downstream 35997 14304297 ~ 14304503 (-) True G676195
TU770162 lncRNA downstream 47345 14292790 ~ 14293155 (-) True G676184
TU770159 lncRNA downstream 48363 14291549 ~ 14292137 (-) True G676181
TU770667 lncRNA upstream 93492 14486150 ~ 14486659 (-) True G676629
TU770680 lncRNA upstream 115671 14508329 ~ 14510428 (-) False G676635
TU770690 lncRNA upstream 136570 14529228 ~ 14529454 (-) True G676645
TU770691 lncRNA upstream 136828 14529486 ~ 14532251 (-) True G676646
TU770693 lncRNA upstream 140042 14532700 ~ 14532952 (-) True G676648
XM_021611606.2 mRNA downstream 707644 13626761 ~ 13632856 (-) True LOC110529435
XM_021611607.2 mRNA downstream 707645 13626761 ~ 13632855 (-) False LOC110529435
XM_021611605.2 mRNA downstream 738939 13598376 ~ 13601561 (-) True LOC110529434
XM_021611214.2 mRNA downstream 781749 13553115 ~ 13558751 (-) True hsp90ab1
NM_001124231.1 mRNA downstream 781844 13552248 ~ 13558656 (-) False hsp90ab1
XM_036984827.1 mRNA upstream 3353 14396011 ~ 14471129 (-) False LOC110529444
XR_005052780.1 mRNA upstream 3353 14396011 ~ 14471129 (-) True LOC110529444
XM_021611617.2 mRNA upstream 157023 14549681 ~ 14573557 (-) False LOC110529446
XM_021611616.2 mRNA upstream 157023 14549681 ~ 14573584 (-) True LOC110529446
XM_036984837.1 mRNA upstream 331114 14723772 ~ 14748492 (-) False LOC110529453
TU770156 other downstream 52155 14287849 ~ 14288345 (-) True G676178
TU770045 other downstream 132875 14206987 ~ 14207625 (-) True G676077
TU769793 other downstream 354392 13983626 ~ 13986108 (-) False G675834
TU769790 other downstream 354392 13983844 ~ 13986108 (-) True G675834
TU769337 other downstream 854363 13485679 ~ 13486137 (-) True G675415
TU770677 other upstream 118932 14511590 ~ 14516528 (-) True G676635
TU773511 other upstream 2039963 16432621 ~ 16433014 (-) True G679087
TU773640 other upstream 2232432 16625090 ~ 16630259 (-) False G679210
TU773642 other upstream 2232432 16625090 ~ 16630259 (-) True G679210
TU773944 other upstream 2720885 17113543 ~ 17114528 (-) True G679471

Expression Profile