RNA id: XM_021611617.2


Basic Information

Item Value
RNA id XM_021611617.2
length 2345
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110529446
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 14549681 ~ 14573584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCCGTCTCAAAAACGGGTTCTCATTGGGCTACCGTTTTGTTAGACACGCCCGTTGGTCTGATTTGGTTGAAGGCATAGATTATTTCCCTGCCCGAATATCTTCGTAAGGTATTTACTCGGTGGCGGATTGGAACCAGGTAAAGGTGTCTGGATAACATACCTGTACCTCCACCCACCTGCCCAAAGATTATAACTATCGTTATACACGATCAGTCCCCACACCGTTGTCCCCTTCTCACATCTTCGGACTTTCTTTGAAACTGCAAGCGACAGTTTGAACATACGATAACTCACAAACATGGATAAAACGGAGCTGATTCAGAAAGCCAAGCTGGCCGAACAGGCGGAGCGTTACGACGACATGGCTTCGTCCATGAAGGAGGTAACGGAGAAGGGTGCAGAGCTGTCATGCGAGGAGAGGAACCTTCTCTCGGTCGCCTACAAGAATGTTGTCGGGGCCCGGAGGTCTGCATGGCGGGTGATCTCCGCCATCGAGCAGAAGACAGAGGGCAGCGACAAGAAGCTTCAGATGGTCAAGGAGTACCGGGAGAAGGTGGAGACAGAGTTACGAGACATCTGCAACGATGTATTGGGGCTGCTGAGCAAATATTTGATTGAAAATGCCCCTAATGCAGAGAGCAAAGTGTTCTATTTGAAGATGAAGGGAGACTACTACAGATACCTGGCTGAGGTGGCCTCTGGAGACGACAAGAAGGAGACGATATCCAACTCTCAAGACTCCTACCAGGAGGCGTTTGATATCAGCAAGAAGGAGATGCAGCCCACACATCCCATCCGCCTGGGCCTGGCCCTCAACTTCTCTGTCTTCTTCTACGAGATCCTAAACTCTCCAGAGAAGGCCTGCTCACTGGCCAAACAGGCCTTCGACGATGCCATTGCCGAGCTCGACACGCTGAGCGAAGACTCGTACAAAGACAGTACCCTCATCATGCAGTTGCTTAGAGACAACCTCACACTATGGACGTCTGACAATGCAGCAGATGAGCCAGAGGCTGGAGATGGAGAGAACTGAGATACTCCCTGTCAACCCTCGCCaagaaatacaacaaaaaaaaatgaggaaaacaatcatttttaCACCTTCATTCCTTATTGTTCCACTTGAAATGATTCTAGTAATGAATGCCAGTCGTACAATggagctgcagtgtgtgtgtgtgacatgaaTCATTTTAGTTTTCACCACGACTCTGCTTTTTGGTATGAAGAAAAGCTCAATTAAGTAAATAATATTATCGCCATGCCTCAGTTTGCTTGTCCCCGCCTTCCTAATGTGCAGTttctgctttaaaaaaatattagcTTCACTTTAACTGTCTGTTCAACATGACAatataggatgtgtgtgtgtccagaaaGATCGGTTTTCTGAATTTTGAAAGGCCATTTGCAAACGGCAAGTATCATGCCGCCTGGGCATATGGTGGGGAGGGAAAGGTATGTCAAGCTGACCCAAATTTGACAGGAATTCTGGCTGCCTCCACTGTCCCCCTGTGTGTTGGTCTTCCAAAAAGGTTGCTAGGTAGTTGCATCTGTCAACACCTGCTGGCCCATGAAAGCCAACCTGACATATTTGgtttatcccaaatggcaccctattcctttttaTAATGCACTagtattgaccagagccctcgtCAAACCTAATGCACTATGAAAGGTAatggggtgctatttgggatacaaATTGTCTGGTAACTTGAACACTCCTGAAACCTGTATTTTATGAATCTGTGGGGGCTATCCAACCAGTGGTTGCATCCCTAtcacctttatagtgcactacttttgaccagggcccctaggGCTGTGGACTaaagtaaagtagtgcactattgaaggaatagggtgctatttgagatgTTAACTGTCAACAGAGCAAGTCCTATCCATGGGCTCTTGTAACAAGGTCTCTCCCTCCACGGTTACAAAACACTCCTTCCTAGTTATATTATTCACCTCAATGTGTTACTTTGTAGCATGTCTGACAATAAAAAGTTGGtactttaagacaaaaaaaagaatGTGGAATGGCAATAGAATAAGTGCATGCATGCCCCTTTAATTTTTTTCACTGTACACTGGAATGGGGAATCAATATTGCATACAGAGTCCCGTTTTTGTTCAGTACTTTTCTTTGCAGGTTTGTGCACATGTCAGAGGGTGTTTGGTTTGTCCAGTGATTGTCATTAGAGATTGAGACCACTAGTGTTTTTGCTAATCATTGATTGTAGCCCCCAAACCTTTGTGAGAATGTTTAATGCCCTGATGTTATGTAACACCTATGTAACATGAATAAAAATGACATTTTGTAAACCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU770694 lncRNA downstream 16240 14533213 ~ 14533441 (-) True G676649
TU770693 lncRNA downstream 16729 14532700 ~ 14532952 (-) True G676648
TU770691 lncRNA downstream 17430 14529486 ~ 14532251 (-) True G676646
TU770690 lncRNA downstream 20227 14529228 ~ 14529454 (-) True G676645
TU770680 lncRNA downstream 39253 14508329 ~ 14510428 (-) False G676635
TU770737 lncRNA upstream 28958 14602515 ~ 14602782 (-) True G676691
TU770747 lncRNA upstream 42128 14615685 ~ 14746960 (-) False G676696
TU770758 lncRNA upstream 59636 14633193 ~ 14635877 (-) True G676705
TU770775 lncRNA upstream 103397 14676954 ~ 14684085 (-) True G676717
TU770784 lncRNA upstream 120309 14693866 ~ 14695835 (-) True G676722
XM_036984827.1 mRNA downstream 78552 14396011 ~ 14471129 (-) False LOC110529444
XR_005052780.1 mRNA downstream 78552 14396011 ~ 14471129 (-) True LOC110529444
XM_036984821.1 mRNA downstream 157023 14340500 ~ 14392658 (-) False LOC110529441
XM_036984823.1 mRNA downstream 157023 14340500 ~ 14392658 (-) False LOC110529441
XM_036984824.1 mRNA downstream 157023 14340500 ~ 14392658 (-) False LOC110529441
XM_036984837.1 mRNA upstream 150215 14723772 ~ 14748492 (-) False LOC110529453
XM_036984841.1 mRNA upstream 150215 14723772 ~ 14748569 (-) False LOC110529453
XM_036984840.1 mRNA upstream 151337 14724894 ~ 14748492 (-) True LOC110529453
XM_021611627.2 mRNA upstream 182434 14755991 ~ 14850442 (-) False LOC110529452
XM_036984834.1 mRNA upstream 182434 14755991 ~ 14850442 (-) False LOC110529452
TU770677 other downstream 33153 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 261336 14287849 ~ 14288345 (-) True G676178
TU770045 other downstream 342056 14206987 ~ 14207625 (-) True G676077
TU769793 other downstream 563573 13983626 ~ 13986108 (-) False G675834
TU769790 other downstream 563573 13983844 ~ 13986108 (-) True G675834
TU773511 other upstream 1859064 16432621 ~ 16433014 (-) True G679087
TU773640 other upstream 2051533 16625090 ~ 16630259 (-) False G679210
TU773642 other upstream 2051533 16625090 ~ 16630259 (-) True G679210
TU773944 other upstream 2539986 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 4217673 18791230 ~ 18792137 (-) True G681659

Expression Profile