RNA id: XM_036984846.1


Basic Information

Item Value
RNA id XM_036984846.1
length 4155
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110529457
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 14984532 ~ 15020390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggGCAGAGCTTTATGTTCTCGGGGATATCTCCTGGTGCTCAGGAAACAGATGTGACCCCACCCCCCACCTGTAATACACACATCCCGCTCGGGAAAAGCCCTTACACCATTGTTACTGTGGTTTCCGTCTGGTGATTGGTTCTTCCCCTGCCTCTCCTTTCTCCGACTGTGCCCCATACATCATAACTGCTGTAGATCTCAGAGTCAACActtccccctttcctccctctgtcacatgctctcttcctctctttcttcactTTCCCTTTCCCCTCTTCAGCGTCTGAACAGGAATAGGCATTCCATTGGCTTCAGAAGTTTCCATTGCTTCTATGCTTCAGGATAGGAACGATCGCGCTGAACagctgttgtgtgtgtctgtgtgcgtatctgtgtgtgtatgtatgtgtgttcatAGTGATCAAGGTAATAATTAAAGAGATTTTATTTGATCTCAATCAGACCTTGTTGGACTTTCCCATCTCACTATCCTTTGCACTTAATTAAGGCCTTTTTGCCTCTGTCTACCATAGCTGTGTTACAGTGCTAGTGATCCACAGGTGTTACAGGACCAGTGATCCACAGGTGTTACAGGACCAGTGATCCACAGGTGTTACAGGACCAGTGATCCACGGGTGTTACAGGATCAGGGATCCACAGGTGTTACAGGGCCAGGGATCCACAGGTGTTACAGGACCAGTGATCCACAGGTGTTACAGGACCAGGGATCCACAGGTGTTACAGGATCAGGGATCCACAGGTGTTACAGGACCAGGGATCCACAGGTATTACAGGACCAGTGATCCACAGGTGTTACAGGACCAGTGATCCACAGGTGTTACAGGACCAGTGATCCACAGGTGTTACAGGACCAGTGATCCACAGGTATTACAGGGCCAGTGATCCACAGGTGTTACAGAGCCAGGGATCCACAGGTATTACAGGGCCAGGGATCCACAGGTGTTACAGGGCCAGGGATCCACAGGTGTTACAGGGCCAGGGATCCACAGGTGTTACAGGGCCAGGGATCCACAGGTATTACAGAGCCAGGGGTCCACAGGTGTTACAGAGCCAGGGATCCACAGGTATTACAGGGCCAGGGATCCACAGGTGTTACAGGGCCAGGGATCCACAGGTGTTACAGGGCCAGGGATCCACAGGTGTTACAGGGCCAGGGATCCACAGGTATTACAGAGCCAGGGGTCCACAGGTGTTACAGAGCCAGGGATCCACAGGTATTACAGAGCCAGTGATCCACAGGTATTACAGAGCCAGTGATCCACAGGTATTACAGAGCACAGGTGTTAGCCTGCTATTAAACCCCTAGAGCTGTGTAGATATGAAAGGGTTGATTGTTCTCCCTTGccatcttcctccctcccttgttcACACACTTACGTTTACACTCAGCACaaacaaagacaaacacacacacacacttagaattTGATATAATTCAGGTAGACATGGAGGAGAATATGTTTTAATCAGAGGATGGGCCATGCAGGTTGCCATTGTGACTGGTCCTGAGTGTAGGGGGACTTGAGAACTTGGTCAGAGGGACTTGGTCATGAGAAAGACCCTGGAGTCATTAATCCTCTGTCACTCTACATTACAACAGAAAGGTaatggctgtgtctgaaatggcacccttttcactctgtagtgtactacttttggccagagccaaTGAGGGCCCATGAGACTggccaaaggtagtgcactatagatggaatagggtgacatttgggacgtaGGCAATGTTTGCTGAACCCAATCCAGTTGGTTTTGAATGGAATTGATtactttattttaattttatttatttaacctttatttatttatttaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccagccaaacccggacgacgctgggccaattgtgcggcgcccTATGGGACAATTACGTCTGGacgtgatgcagcctggaatgcaGCACACATGCTAATCACACTAATCAAAGCTCTGATAGCTGCATGTATGAACTATGGGGTGGAGACAGACAACCTGAAGACTCTGGTAGGTCGTATGAGAGCGGCATCCAACAACCTCCACAACTCAGCGTCGGAGCGCAGAAAGAACCTGTCATACGAGGGCAAGAAGTCCCACAAACCCCCCAATGACTTTCTCACTGCTGTCGTGGAGCTCATTGGAGCAGCCAAGAGTCTACTGGCCTGGTTGAACAGGACTTCTCTGACGGGGATCAGTGACTTCACCTGCACTAAGAACAGGATCATTCAGCTGTGTCTGGAGCTCACCTCCACCGTTCAGAAGGACTGCACAGTTTATGACATGGAGGAGAAGATTCTGGAAGTGtctgtggCTCTGAACGTGATCAGTGAGCAGACGATGAGGACGACCTCTGACCCCCAGAAGAGTCAGATGGCCTGTCTGGAGGAGGTCCATATCACGAACATCAGACCTAGGGATGGACTGGGGTTGTATATCAAATCTACCTACGACGGGCTTCACATCATCACTGGCACCACAGAACATTCTCCAGCAGACAGAACACACAGGATCCACGCAGGAGACGAGGTCGTCCAGGTCAACAAGCAGACAGTGGTGGGCTGGCAGCTGGACAACCTGGTAGGTAAGCTGAAGGCGGACCCAGCAGGCGTTACTCTGGTGGTGAAGAAGAGGCCCTCGGGTACCTTTAGCTTCACCCCGGCCCCCCTGAAAAACATGCGCTGGAGGCCCCTTCTGGTGCAGAGCGCCCTGAGTATGCCTAAGATCCAGGCCCCAAAACATGCCAGTGAAGCCCGCATGAAAAAAGAAAAGCCAGCCATTCTGGACCTATTTAttcctcctccccctactgtaccCTATACCCCACGAGATGAGAAGCCTACAGCCAGTGTCAAACTGAGACCGAAGGGTTCACAGTCTCCAAACTCCTTCCTGGATGAGGGCAGACGGCGCTTCACCATTGCAGACTATGACAACAAGATCAGAGTCTGCCCCCCTCCTGAGCCCAACCTCCAACCAGCCCAACCAGCCCCAGTAGCCCGCCTGAGACAACAGACATCCAGACGGGGTAAACCACGGCCCCTGTCCATGCCTGTAGACTCGTGTTTGGGCATGTCTGATTCATCCTCCAGACCCTGGCCCCAAGGGAGAAAAGGAGAGGACATCCTGCACAGATACCTGAGTAACGAGCGCATCGCCACCATCTCTGAGGAGGCCTCGTTCTTCCCCCTACCCTACAGACCCCTGGAGGGTCGATCTGGCCAGCTGGTCCGTGGCGTCGACCACATCCGGGGCTCCCAGTGCTTCATAAATGCTGACCTGCACAACAGCGCCACCATCCCCTACCAGGAGGCATCGTCGAAAAAGGTCCCGGCTACAATTATGACCCCTAGTGCTGCTGCTACTCCCAAACGCCCTCCGTCTGAACCCTCTTCGATCCTGGGGGGCTGGCTAGCCCGCCTCAGGCTGTTGAGTCATTGACGAGTGCCTCGACCTTGTGGACAGTGGAACGTGTGTCGCCCCCACTGCCTTTACCTTGCTATAATCTAACAGTGGTATGGTTTCTCCACTCAGTATTCTGACTAACACCTACCATACCTGGAACGTTCTGTTGGAACTTGGAACACTAAAACAGCTTTTGGAAGCTTCGCTTAATTTCAACGCCACATCGCCTAGGGGTAGACCATTTGGTTGGATCTCTCGCTTCATTTCAACGCCACATAGCCTAGGGGTAGACCATTTGGTTGGATCTCTCGCTTCATTTCAACGCCACATAGCCTAGGGGTAGACCATTTGGTTGGATCTCTCGCTTCATTTCAACTCCTTGGCGTGACAGACCTGGTTTAGATTCAATATGCTGACAGATTCAGAATGTTTCGTGGAGGAGTTTCTGTCTCTGCTCATTTTCCTAACCAAGAGAAGGACTATCATTCAGGTTTAGGGAACATTAGCCTTGCTTCTGTAGGTGAACTGTCCTATGTGTAAATTGTTAAGTTATTTAGTTTGTGTCTGTACAGATTTATTGTACATACGTTTAAAATCATTTTAAGAAGTTGATTTGATTTTTGTACcgttttattttgtatttcatttcATGAGTTGATATATAGACATAATTAAAGCCTATCGTTTTATTTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU770899 lncRNA downstream 97067 14884362 ~ 14887465 (-) True G676822
TU770846 lncRNA downstream 209980 14774026 ~ 14774552 (-) True G676771
TU770825 lncRNA downstream 258597 14725676 ~ 14725935 (-) True G676753
TU770746 lncRNA downstream 277708 14698388 ~ 14706824 (-) True G676696
TU770784 lncRNA downstream 288697 14693866 ~ 14695835 (-) True G676722
TU771282 lncRNA upstream 27038 15033260 ~ 15033545 (-) True G677114
TU771287 lncRNA upstream 27767 15033989 ~ 15038853 (-) True si:ch73-111k22.3
TU771290 lncRNA upstream 32981 15039203 ~ 15039434 (-) True G677117
TU771297 lncRNA upstream 115742 15121964 ~ 15124406 (-) False LOC110529461
TU771298 lncRNA upstream 115742 15121964 ~ 15124406 (-) False LOC110529461
XM_021611632.2 mRNA downstream 3678 14971614 ~ 14980854 (-) True LOC110529456
XM_036984842.1 mRNA downstream 19219 14908875 ~ 14965313 (-) False LOC110529190
XM_036984843.1 mRNA downstream 19219 14908875 ~ 14965313 (-) False LOC110529190
XM_036984844.1 mRNA downstream 19219 14908875 ~ 14965313 (-) True LOC110529190
XM_021611631.2 mRNA downstream 82925 14888797 ~ 14901607 (-) True LOC110529455
XR_005053016.1 mRNA upstream 27693 15033915 ~ 15036114 (-) False si:ch73-111k22.3
XM_036986838.1 mRNA upstream 27693 15033915 ~ 15038888 (-) False si:ch73-111k22.3
XR_002474623.1 mRNA upstream 27693 15033915 ~ 15039013 (-) False si:ch73-111k22.3
XM_036984847.1 mRNA upstream 99732 15105954 ~ 15118998 (-) True ndufaf7
XM_021611640.2 mRNA upstream 115719 15121941 ~ 15124350 (-) False LOC110529461
TU770677 other downstream 468004 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 696187 14287849 ~ 14288345 (-) True G676178
TU770045 other downstream 776907 14206987 ~ 14207625 (-) True G676077
TU769793 other downstream 998424 13983626 ~ 13986108 (-) False G675834
TU773511 other upstream 1426399 16432621 ~ 16433014 (-) True G679087
TU773640 other upstream 1618868 16625090 ~ 16630259 (-) False G679210
TU773642 other upstream 1618868 16625090 ~ 16630259 (-) True G679210
TU773944 other upstream 2107321 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 3785008 18791230 ~ 18792137 (-) True G681659

Expression Profile