RNA id: XM_036986838.1


Basic Information

Item Value
RNA id XM_036986838.1
length 530
RNA type mRNA
GC content 0.44
exon number 2
gene id si:ch73-111k22.3
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 15033915 ~ 15039013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGCTAATTTCTCAGCTATTTATCCCGTTATTCTCAAAACTCTATGATGGCTGTAGTATCTGCGACCTCTAACGGCGCAGATGAAAACCCCGTTGAGATAAAAGAGGACAAAAAAGGATGGTTATCCAAGCGCACTCATTTTACGCACCGGTGGAAACGCGCATGGTTTCAGTTGAAAGAAACTCTACtgttttatggtgaaaatgaagAGcttctgaagcccaTCAACCTGGTTGGGGCAGTGGTAGAGGTTGTTGAAGGAGGCGATGGATCATTCGAATGGACTATTACTCCTAAGGACAGGAAGCGGACCTTCTTCCTAAAGGCTGGCACCATAGCAGAACAGCAGGGATGGATGGAGGCTATATGTGAAGCACAGCTGAGCTCCAGGGACCATGCTACTAATGCATGTGTGGTGCAATAGATGATCACTTATTGGATTTTACATACCCTGAACAagaatataaaagcaacatgtaaagtgtttcatgagctgaaataaaagatcccagaaatgttccatacgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU771282 lncRNA downstream 370 15033260 ~ 15033545 (-) True G677114
TU770899 lncRNA downstream 146450 14884362 ~ 14887465 (-) True G676822
TU770846 lncRNA downstream 259363 14774026 ~ 14774552 (-) True G676771
TU770825 lncRNA downstream 307980 14725676 ~ 14725935 (-) True G676753
TU770746 lncRNA downstream 327091 14698388 ~ 14706824 (-) True G676696
TU771290 lncRNA upstream 315 15039203 ~ 15039434 (-) True G677117
TU771297 lncRNA upstream 83076 15121964 ~ 15124406 (-) False LOC110529461
TU771298 lncRNA upstream 83076 15121964 ~ 15124406 (-) False LOC110529461
TU771299 lncRNA upstream 83076 15121964 ~ 15124406 (-) False LOC110529461
TU771300 lncRNA upstream 83076 15121964 ~ 15124406 (-) True LOC110529461
XM_036984845.1 mRNA downstream 13525 14984532 ~ 15020390 (-) True LOC110529457
XM_036984846.1 mRNA downstream 27693 14984532 ~ 15006222 (-) False LOC110529457
XM_021611632.2 mRNA downstream 53061 14971614 ~ 14980854 (-) True LOC110529456
XM_036984843.1 mRNA downstream 68602 14908875 ~ 14965313 (-) False LOC110529190
XM_036984847.1 mRNA upstream 67066 15105954 ~ 15118998 (-) True ndufaf7
XM_021611640.2 mRNA upstream 83053 15121941 ~ 15124350 (-) False LOC110529461
XR_005052786.1 mRNA upstream 83053 15121941 ~ 15124402 (-) False LOC110529461
XM_021611639.2 mRNA upstream 83053 15121941 ~ 15124458 (-) False LOC110529461
XR_005052785.1 mRNA upstream 83053 15121941 ~ 15124458 (-) False LOC110529461
TU770677 other downstream 517387 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 745570 14287849 ~ 14288345 (-) True G676178
TU770045 other downstream 826290 14206987 ~ 14207625 (-) True G676077
TU769793 other downstream 1047807 13983626 ~ 13986108 (-) False G675834
TU773511 other upstream 1393733 16432621 ~ 16433014 (-) True G679087
TU773640 other upstream 1586202 16625090 ~ 16630259 (-) False G679210
TU773642 other upstream 1586202 16625090 ~ 16630259 (-) True G679210
TU773944 other upstream 2074655 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 3752342 18791230 ~ 18792137 (-) True G681659

Expression Profile