RNA id: XR_005052786.1


Basic Information

Item Value
RNA id XR_005052786.1
length 1811
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110529461
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 15121941 ~ 15124458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTCGGGAAGTAAAATTATACAAGGGCATGTGAGGTAGATGGCCCCCAAACCATTAGCACCGTTAGCAAGGAGACTGTTCAAAGGAGTAGTACTACTTGAAGTTGCAGGTGTGCTAGGTGCTTATGGTCTTTTTTACAAGATGAACACAAGTCAAgATTTCAGGAACAGAATGAACAACATGCTTCCCTCTGTCCTGGAAGTTTATTACAAGTCCAACGAATATGCTGGGGTTTATGGGATTCGAGAGAAAGACCTTGAAGATTGGTCCAAGAAGGAATAGAGGGTCTTGATGTCTCTGCCACGGACCCAGTCGTCTTTCTGGGCTTCCCACTTGAGCTGCCTGACACCTGGAGGAAGAGAAGACGGAAGAGCAATGAGCAAAAACCAGACTGCATCCTCTACTAAAGTTAGGTCATCATCTGTATTCAACAACATGCTCCATATGAAATGTGCCCGGTGGTTATCGTCTTAGGGTTACCTTTAGATCAGTGGttctccatcctggtcctggggacccaaaaacatttggttttaccctagcactacacaccggAATCAAAGcctgatgatttgaatcaggtgtgtagcgctaaggcaaaaactaaaatgtgcaccccttttgggtccccaggaccaggatggagaaCCAGTGCTTTAGAGCCATCATGCTTGAGAGAATAGCCTATTCTGTGCAACTTTAAAAAGGACTACTAGAGTATGACAGGGTGTGCTATGGGGGTTGACGGTTAATCGGTTAGCCACTGAAAATACATTTGACCGGTCATGCTCATCAATCTATAGGTTAACCTGTATTATTTGGTGGAATTAAATTGGCGCGTGTGTATTTTTATTAGTCGTCATGCATCTTATTTATCACACACACCGTAGTTTGAGGATCGGAATGACccatcacctgtcagacagtgcAAGAGCAGGTCCTCAAAAAGCTAGTACTGGAGTGAAACATGCTTTTGTATGCCCAGCCATTGTGCAGCAAATCATTCTAAATGCAATCGTGTGTTAATGGTTTTGATGGCCACGATTTAAAAAGAGCTGCCAGGTTTATTTCTTATTAAAGTGCATTACTTTACATGTGAGCTTGAGGCAGTAATTGTTTGAAACCCACAACTTTTCCTTTACTTCAAATAATGAGGAAGGTCTTaccttcaaagtagcctagccaaatTCTAACCATAGAAATGTGaaggcaattattttatagaattacccAGAATTTCTGTTCTATTGGTTTCATATCAACTTTCTGtcgttgtccagaagccaaaggcacaatccgaGTCATATTAGCAGCCCATCCTAGTTGTTGCTATTAGATTCCCCCTTTAAGTTTCTTAAAGGAGAGTTTCATATGGAGCCCCTTGCAATAGAGGGGTGCTGTTTAGAGCGGTATTTTCCGGCAAATTGCATTTTGACAAATGTCTGAAAATCTCATTTTAATTATCTGCTTCATTACAACAGGTGCATGGTCAATAATAGGCTATAGCCTTTTCACTGTAAGACGACAGACTTGCTATTGTTGCATGTTTTCATTAAGCACTTAATGAAACATGTCCGTTTCTTGTATGCATGCATAGTATTTTCTATTGGTCACGTAATTTTACTGTCTAGAAAAAATGTAACAGTTTGTTGACCAGTTAATGAGGGTTGGTTAATCGGCATCAAAATTGCCCGAAATGTGCTTCCCTAGTATGCTCTAAACTGCTGTGAAGATACTGACTCTCCATGGGGGATATACTGTGGTTTTCCGCTAGTATCTAGCCAACTAAATAAAGTAATTTATATGAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU771290 lncRNA downstream 82507 15039203 ~ 15039434 (-) True G677117
TU771287 lncRNA downstream 83088 15033989 ~ 15038853 (-) True si:ch73-111k22.3
TU771282 lncRNA downstream 88396 15033260 ~ 15033545 (-) True G677114
TU770899 lncRNA downstream 234476 14884362 ~ 14887465 (-) True G676822
TU770846 lncRNA downstream 347389 14774026 ~ 14774552 (-) True G676771
TU771422 lncRNA upstream 110446 15234848 ~ 15238279 (-) False LOC118965496
TU771427 lncRNA upstream 110446 15234848 ~ 15251367 (-) False LOC118965496
TU771430 lncRNA upstream 110446 15234848 ~ 15240383 (-) False LOC118965496
TU771432 lncRNA upstream 110446 15234848 ~ 15251367 (-) False LOC118965496
TU771436 lncRNA upstream 110446 15234848 ~ 15243890 (-) False LOC118965496
XM_036984847.1 mRNA downstream 2943 15105954 ~ 15118998 (-) True ndufaf7
XR_002474623.1 mRNA downstream 82928 15033915 ~ 15039013 (-) False si:ch73-111k22.3
XM_036986838.1 mRNA downstream 83053 15033915 ~ 15038888 (-) False si:ch73-111k22.3
XR_005053016.1 mRNA downstream 85827 15033915 ~ 15036114 (-) False si:ch73-111k22.3
XM_036984845.1 mRNA downstream 101551 14984532 ~ 15020390 (-) True LOC110529457
XM_021611644.2 mRNA upstream 100973 15225375 ~ 15230012 (-) True LOC110529463
XR_005052787.1 mRNA upstream 110397 15234799 ~ 15239365 (-) False LOC118965496
XR_005052789.1 mRNA upstream 110502 15234904 ~ 15239287 (-) False LOC118965496
XR_005052788.1 mRNA upstream 110502 15234904 ~ 15239675 (-) False LOC118965496
XM_021611648.2 mRNA upstream 153358 15277760 ~ 15323434 (-) False LOC110529465
TU770677 other downstream 605413 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 833596 14287849 ~ 14288345 (-) True G676178
TU770045 other downstream 914316 14206987 ~ 14207625 (-) True G676077
TU769793 other downstream 1135833 13983626 ~ 13986108 (-) False G675834
TU773511 other upstream 1308219 16432621 ~ 16433014 (-) True G679087
TU773640 other upstream 1500688 16625090 ~ 16630259 (-) False G679210
TU773642 other upstream 1500688 16625090 ~ 16630259 (-) True G679210
TU773944 other upstream 1989141 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 3666828 18791230 ~ 18792137 (-) True G681659

Expression Profile