RNA id: XR_005052788.1


Basic Information

Item Value
RNA id XR_005052788.1
length 1249
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC118965496
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 15234799 ~ 15251367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atactatatcaccactaaccagctgtttctgcctgtagtctgttggtaaaggctatactatatcaccactaaccagctgtCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagctgtttctgccctgTAGTCTGTAGgttaaggctatactatatactatatcaccactaaccagctgtCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagcGGTCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagctgtCTCTGCCCTGTGGTCTGTAGTttaaggctatactatatcaccactaaaCAGCTGTCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagATTTCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagctgtCTCTTCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagctgtCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagctgtCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagctgtCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagctgtCTCTGCCCTGTAGTCTCTAGgttaaggctatactatatcaccactaaccagctgtCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatacaatatcaccactaaccagctgtCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagctgtCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagctgtCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagctgtCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatactatatcaccactaaccagctgtCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagctgtCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagctgtCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatcaccactaaccagctgtCTCTGCCCTGTAGTCTGTAGgttaaggctatactatatacaatatcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU771297 lncRNA downstream 110498 15121964 ~ 15124406 (-) False LOC110529461
TU771298 lncRNA downstream 110498 15121964 ~ 15124406 (-) False LOC110529461
TU771299 lncRNA downstream 110498 15121964 ~ 15124406 (-) False LOC110529461
TU771300 lncRNA downstream 110498 15121964 ~ 15124406 (-) True LOC110529461
TU771290 lncRNA downstream 195470 15039203 ~ 15039434 (-) True G677117
TU771537 lncRNA upstream 129799 15369474 ~ 15369762 (-) True G677322
TU771693 lncRNA upstream 247952 15487627 ~ 15487900 (-) True G677471
TU771695 lncRNA upstream 249148 15488823 ~ 15489091 (-) True G677473
TU771703 lncRNA upstream 254460 15494135 ~ 15494411 (-) True G677481
TU772301 lncRNA upstream 496683 15736358 ~ 15736712 (-) True G678027
XM_021611644.2 mRNA downstream 4892 15225375 ~ 15230012 (-) True LOC110529463
XM_021611639.2 mRNA downstream 110446 15121941 ~ 15124458 (-) False LOC110529461
XR_005052785.1 mRNA downstream 110446 15121941 ~ 15124458 (-) False LOC110529461
XR_005052786.1 mRNA downstream 110502 15121941 ~ 15124402 (-) False LOC110529461
XM_021611640.2 mRNA downstream 110554 15121941 ~ 15124350 (-) False LOC110529461
XM_021611648.2 mRNA upstream 38085 15277760 ~ 15323434 (-) False LOC110529465
XM_021611646.2 mRNA upstream 38085 15277760 ~ 15323995 (-) False LOC110529465
XM_021611647.2 mRNA upstream 38085 15277760 ~ 15323996 (-) True LOC110529465
XM_036984852.1 mRNA upstream 204829 15444504 ~ 15447233 (-) True LOC110529466
XM_036984848.1 mRNA upstream 207709 15447384 ~ 15476914 (-) False cfap61
TU770677 other downstream 718376 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 946559 14287849 ~ 14288345 (-) True G676178
TU770045 other downstream 1027279 14206987 ~ 14207625 (-) True G676077
TU769793 other downstream 1248796 13983626 ~ 13986108 (-) False G675834
TU773511 other upstream 1192946 16432621 ~ 16433014 (-) True G679087
TU773640 other upstream 1385415 16625090 ~ 16630259 (-) False G679210
TU773642 other upstream 1385415 16625090 ~ 16630259 (-) True G679210
TU773944 other upstream 1873868 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 3551555 18791230 ~ 18792137 (-) True G681659

Expression Profile