RNA id: XM_021611648.2


Basic Information

Item Value
RNA id XM_021611648.2
length 3408
RNA type mRNA
GC content 0.51
exon number 31
gene id LOC110529465
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 15277760 ~ 15323996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAACCTTATTGCACTTTAGATATTAAAATAGTTTTCATAATTTTCTCTATTCAACGACATAGCTAGCAGAGCATATTATATCATTTGTCGATTGAATGAACAACAATGTATGGGATGCACGCAgttagatagctaacgttagctatgctACTTGCAGTGATTGACACAGAAACTCGTGTGCAGAGCCTTGCTGCCTGTGTTGCGCAAGTGTCGAGTTGGTATTCCATTGGTTTGCGAACATGCAGAAGCGAGACAGCCCGCCAATGTTTTGACTTGGCGTGTTACGGAATCTAATGCATAACCAATCCAAGGAATGTAATGGGGTACGAATTCCTGTTGATACCAGCAAACCGAATCCAAATGAAGTGGAGTTTGACAATTTGTACTTGGACATGAATGGGATCATTCACCCCTGTACACATCCTGAAGACAAGGCTGCACCCAAAAATGAAGATGAAATGATGGTTGCCATCTTTGAATACATGGATCGGCTCTTCAATATTGTGCGACCCAGAAGGGTTCTCTACATGGCTATTGATGGAGTGGCCCCTCGCGCCAAAATGAACCAGCAGCGCTCCAGGCGATTCCGTGCTTCTAAGGAAGGAGTGGAACTGGTTGAGGAGAAATCCCGCATCCGAGAGGAGATCCTCGGGAGAGGAGGGTATCTTCCACCGGTTGAAATCAAGGAGAGATTTGACAGCAACTGTATCACGCCAGGCACAGAGTTCATGGACAACCTTGCAAAGTGTCTCCGTTACTACGTTGCAGACAGACTCAGTAATGACCCTGGATGGCGTAACATTACAGTAATCTTGTCTGATGCCAGTGTCCCTGGTGAGGGGGAGCATAAGATCATGGACTATATTAGACGGCAGAGAGcTCAACCCCACCATGACCCCAACACACACCACTGTCTTTGTGGAGCTGACGCTGACCTGATCATGCTGGGTCTTGCCACTCACGAGCCCAATTTCACCATCATCAGAGAAGAGTTCAAGCCCAACCAGCCTAGGCCCTGTGCTATGTGTGGACAGAAAGGCCATGAGATCAAGGACTGCCAGGGAGTGgccagggagaaacagggagagCACGATGAGTTTGCAGACACTATGCCGGCTTCTGAACAGGAGTTCATATTCATCAGGCTGTGCGTTTTGCGCGAGTACCTGGAGCGAGAGCTGACAATGGCCAGTCTGCCCTTTCCCTTTGACTTTGAGAGGACTGTCGACGACTGGGTCTTCATGTgcttctttgttggcaatgaTTTCCTGCCTCACTTACCGTCCTTAGAGATTAGAGAGGGTGCGATAGATCGACTGGTGGGCATCTACAAAGACGTCGTGCACAAGACTGGAGGCTACATCACAGAGAATGGTTTTGTCAAATTGGAGAGTGTTGAGTTGATCATGCAGGCCATCGGCGTGGCTGAGGACAACATCTTCAAGAAGCGCAAAGAGGACGATGAGGGATTCAAGCGAAGGAATAAGGACAAAAAGAAGAGAATGAAGGCTCAGCAGCAGGGCCCAGCCTACATGACCGCTGGTCAGTTCGCCCCCCAGGCCCTTGGCGGCAGAGGCAGACCTGGGGTTGTCCAGAACGCCCGACACCAAGCCTTCGACATGAGGATGCAGGGCAGGGACCAGCACAACAAGGATGCTGCGCAATCCCTAAAAGCCATGATGAAGAATGGTGGCCAGgCAGGAAGCAGTGATGGGCAGGATGGCCGGGGTGTGAAGCGGAAAGCCGAGGACAGTGACAGCGAGCCAGAGCCTGAGGATAACGTCAGGTTGTGGGAGGACGGCTGGAAGCAAAGATACTACAAAACCAAGTTTGATGTTGACGCGACTGACGATGACTTCCGCAAAAAGGTGGTGAAGTCCTACGTGGAGGGTCTCTGCTGGGTACTCCGATACTACTACCAGGGGTGCGCGTCCTGGAAGTGGTACTTCCCGTTCCACTACGCCCCATTTGCCTCGGACTTCAAAGACATCAAAGGCATGTTCACCGACTTTGAGCTTGGGACCAAGCCGTTCAAGCCCCTGGAACAGCTGATGGGTGTCTTCCCTGCCGCCAGTGGAAACTTCCTGCCCCAAACATGGCGGTCACTCATGAGCAACCCAGAATCCTCCATCATTGACTTCTACCCTGATGACTTTGCCATTGACTTGAATGGAAAGAAATACGCTTGGCAGGGTGTTGCATTGCTTCCCTTCGTGGATGAGCGCAGGCTGAGGGCAGCCCTGGCTGAAGTCTACCCAAACCTTTCTCCAGAGGAAAACAAGAGGAACAGCCTTGGCAGTGATATGCTGTTTGTTGGGAAGTCTCATCCTTGCTGTGACTTCATCCAGGAACTATACCGTGGAGAATCTCATGAGGGCACTGAGATGCCAGCAGAACTATGCCATGGAATTCAAGGTACATTAAATCTTGACGAAGACCCTATCCTACCAGATAAGCCAGTGCAGTCTCCCATCCCCATGCTGCGGGACATTGCACAGAACACCGCCATTGGGGTGAAATATAAGGACCCACAGTACGGAGAGACCTTTGTGTTCAAGGCTGTCATTCTTCCTGGAGCTAAGATGCCTGAGAAGGTTCTGAAGCCTGGGGACTGGGAGAGAGGTAACCGTGGCAGGGGTAACTGGAGGCCCCAACTGGGTTTCAACTCCAACAGGCAGCAGGTCCACCTTGACCAGTCAGCCTTCAGGGCCCTGGGTCACAGCATGAACAGACAGCAGCAGGGAGGTGGGCAGTACAGCAACGCTGCGCCCCCTGGCAACTACCACCAGGGGAGCTACAACAGGCCCCCCCACTGCGGCAGTGGTGGTCACCTCCCACCCTTCCAACATTCTAGGCAGCAGGGTCTTCTAGGGACACCTCCCCCATACAACCCTCCGCAGCAATATCCAAGGCAgcagtatggtggtggtggtggtggtgggcatGGCTGGGACCGGTCGCCTCAGAGAGGAGGCCACGGAGGGGGGCAGGGCCAGGGCGGCTACCATCAGCAGCGTGGTCAGGACGACCACAGAGGAGACCGCAGAGGAGACCGTGGAGGACAACCGGGATACCACTCTGGACGGAATTACCACTTGCCACCCCCAGAAGGAAAATACAATTGGAGTTAAATTCAGACCTAGTAGTGCTGAAGGcgattttaatttttaattttttcgAAATACACGTCTTTTTCAGGCTGTTGACTTGTaagatgtttttgtttttaattctACCTAAAATGTTCTTCTATGTAATGCATTTTTAAGAATACCTGTAAAACTTGTGAAATACCAGTCAGTCAAGACAATTGTCATTGTCAGTTCATTTGGAAAGATTAGCTCCATATTTCAGTGTACAAGTTACTCTATTTTCTGAAATAAAACCAAATTCAACTTTTTGCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU771427 lncRNA downstream 26393 15234848 ~ 15251367 (-) False LOC118965496
TU771432 lncRNA downstream 26393 15234848 ~ 15251367 (-) False LOC118965496
TU771442 lncRNA downstream 26393 15234848 ~ 15251367 (-) False LOC118965496
TU771436 lncRNA downstream 33870 15234848 ~ 15243890 (-) False LOC118965496
TU771441 lncRNA downstream 35374 15238358 ~ 15242386 (-) True LOC118965496
TU771537 lncRNA upstream 46040 15369474 ~ 15369762 (-) True G677322
TU771693 lncRNA upstream 164193 15487627 ~ 15487900 (-) True G677471
TU771695 lncRNA upstream 165389 15488823 ~ 15489091 (-) True G677473
TU771703 lncRNA upstream 170701 15494135 ~ 15494411 (-) True G677481
TU772301 lncRNA upstream 412924 15736358 ~ 15736712 (-) True G678027
XR_005052788.1 mRNA downstream 38085 15234904 ~ 15239675 (-) False LOC118965496
XR_005052787.1 mRNA downstream 38395 15234799 ~ 15239365 (-) False LOC118965496
XR_005052789.1 mRNA downstream 38473 15234904 ~ 15239287 (-) False LOC118965496
XM_021611644.2 mRNA downstream 47748 15225375 ~ 15230012 (-) True LOC110529463
XM_021611639.2 mRNA downstream 153302 15121941 ~ 15124458 (-) False LOC110529461
XM_036984852.1 mRNA upstream 121070 15444504 ~ 15447233 (-) True LOC110529466
XM_036984848.1 mRNA upstream 123950 15447384 ~ 15476914 (-) False cfap61
XM_036984849.1 mRNA upstream 123950 15447384 ~ 15476914 (-) False cfap61
XM_036984850.1 mRNA upstream 123950 15447384 ~ 15476927 (-) False cfap61
XM_036984851.1 mRNA upstream 125758 15449192 ~ 15476915 (-) True cfap61
TU770677 other downstream 761232 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 989415 14287849 ~ 14288345 (-) True G676178
TU770045 other downstream 1070135 14206987 ~ 14207625 (-) True G676077
TU769793 other downstream 1291652 13983626 ~ 13986108 (-) False G675834
TU773511 other upstream 1109187 16432621 ~ 16433014 (-) True G679087
TU773640 other upstream 1301656 16625090 ~ 16630259 (-) False G679210
TU773642 other upstream 1301656 16625090 ~ 16630259 (-) True G679210
TU773944 other upstream 1790109 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 3467796 18791230 ~ 18792137 (-) True G681659

Expression Profile