RNA id: XM_021611658.2


Basic Information

Item Value
RNA id XM_021611658.2
length 4218
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110529475
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 15854622 ~ 15888522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACAGTAGCTTTGCAAGCCCTTACCTTCACAGACAAAATAGGCTACgtggaggcagcagcagcagatgATGTGCCCAAGTCGACGCACGTattattttgattaaaaaaaaatctagcaCCTGAAtgagtaataataacaataattggCAAATCAATAGGGGCATTTCCAGTCAATTATTATAGCTACCAAATAATGTTGGCCATGCAgtttatagctagctagctactttgtaACAATCGAATGAACACAATGTGTGTTGCGCTAACAAAATAATTCTGAGACCAGTACGGTACATTTGGCAATTTGTTTTTTGGCTACAAAAAAGTAATCGACACATTGTTCAAAGAAACACAAAGAGCCTAATCGCGAGCCCGGGTCGCTGATGAGAAGCAAACACCATCTGACAGAGAGAACATGGAATAAACCATGGCCCACAATATAAGATTTTTTGAAGCTCTGGATAGATCACAGACCAGGCGAGATGGCGGGTACAAGCAGAACTGGAGCTTTTCTCTTTCTGAAGGCAGTGAAGAGCAGAGGAGACACGACACATCGGTGGTGACCATGGAGATGGACAGACAGCAGCACTCCTCCCCAGAGGGACAGAAGTCCCCCGCTCTTAGGCATTTCTCTTCTGCGGATCCCCTAAAAACATATGAAAACAGGCCAAATACAAATAATCACATAGGGGCTCTAAACAAACCAGGAAGTGACAAGAGTGACCTCCCAAACATGGTAGCAACGACGTCACCGATGCCTAACAGAACTGACTATTTAATAGTCAGCCCAACACCATCTCAAGGAGTTGTTCTACAGGGGAGACCCTTTCAACACACCCACAATGTTCCTGCTGCAATGAGGAAACCTGTCCAAAGAAGGGACTACAGCACCACTCAACAGCAGATCCAAGCAGCAGAAGTAGAGAGTATCATCCTCACCTGTCCAGAGAGCCCAGCCAACGACAACGTGAGCATCAAAGAGCACAGTCGGAGACCCTTGCTGGAGGGCTGTTGTAGCTTTCCCTCGCAGGTTCAGAGAGTGGAGCCCCTAAATCCAGAAAGGAACCACACAGTGTGTGGGAAGTGTAGCAAATCCAGTGAAAGCCACAGCACGTGTGAACACTGTGGGAACTCCTTGGTGCCAGAGGTTCCCCACCTCTACCACCCCCCAGCAGCCCAGCCTACGTCCCCCACGCCCAGACCCCCCATTCGACCTCACCCACAGCACACCCACCCCCATCAACACCCATCCCCAGGACCAAACAGTCGACAGCTGACCAAGAATAGCTTCTACGGTTCGTCCTCGACCATGAGGGCGCTGCCGCTGCGTGTGGACACAGTGATGAACCCGCCTATTCCGGTACGCATCACAACCCGGGCCGGCCTGCCGCTGCCACACAACGGGAGACCCGCGGGGGTGGGGTTGGTGGGGAGCTGCTGCGCCGGGAAAGTCGCCGGCAACAAAGGCAGGAGGACGGCGTCCGCCAAGCAGCACGAGCTCAACGACCCCATCGTGCTGTCCAGTGACGAGGATGAGGCGGACAACGCCAGCACGGGCAGCGTAAACAGGCTGGACAGCGTTTCCCCTCGGCCAGCTGACTCAGCCCACTCCTCACCGGCGCCCTCCGGAGGCAGAGTGGAGGCGGCAGTGAAGAGTAGCACAGGAGGGGAGCAGGAGGAGATCACTTCTGACTTCTTCTCCGACATCGACAGCAGAATTTCACTACCCAGAAGGAACCGCATGAAAGATCAGTTTGGAAACCAAATGCCGGATGACTCTACACCCAGGAAAAAACAGAGGATCTCTCCCGACAAGTTGGACAGCATCATCCTGGACTGTCGGAGTCTGAGAGTAGGGACTCTTCGCAGGATGGTGTCCAAGCCTGTCAATTTTACGGTCGATCACATTCATCTTGAAACTGAAGGTCCTGAGGTGGATTCTCTGGAGAAGGTGTGTCTGCGTGCGTCGGAGCTCATAAGCTGTGAGTGGTGCAGCGTGAGGAAGCTGCCCGTCCTTTTCTTTCAGACCAGCCCCGAGGAATGTGTGCGGCTCCGCACCCAGCTCAAGATGACCCGAGACAAGGGAGGCCTGTGCTGGTACGACTGCGCTGGCAACGACTCCGATGAGAAGTACATGGTGTTGATCTTTGAGAACGGGCTGTCGATGCAGCAGCAGATGGTTCTAGAGGAGATTCTACAAGAGATCGGCCGAGCCAACAACCTCAATGAGTTCCCCACCAAATTGTCGTTTGATGAAGCTAACATCAGATTGGTCAACTACAACAAAGCAACTAAAGAAAAGGTAAACAACAGCACTAAAACCAACACACCGGCTCCAATGGTGCGAACGCGCATGGCTACACGACAGCAGAACAGTGCGTTCtttgatgatgaagatgatgacatGGCTGAGCTCCAACCCACCTTCACTGGACCAATCATAAAGTTGATGGTGTACCCACCTCCTCCAGCCAAGGGGGGCATATCGGTGACTAACGAAGACCTTCACTGCCTTAACGATGGAGAATTCCTAAACGACGTCATCATAGACTTTTATTTAAAATATTTAGTTTTGGAGAAGTTGAAAAAAGAAGACTCACAAAGGAGTCACGTGTTTAGCTCATTCTTTTACAAGAGACTCAaccagaaagagaggagaaaccTCCCAGACACCACAAACCTACCGATGCAGAAGAGGAAGCACAACAGGGTGAAGACATGGACCAGACATGTAGACCTGTTCCAAAAGGACTTCATCTTTGTTCCCATTAATGAGTCAGCCCACTGGTACTTGGCAGTGATCTGCTTCCCAGGGATGCAGGACCCTCAGTTTGAGCCCAACCCTTTGTGCCAGGCCCCAGGGCTATCACAGACACAGTCAGCCCCCCAGGGCAGGCCTCCTGACCACTGCCGGCCACTCTCCCCAGAGTCAGACTACTGTGAGCCCCCAGGCAGTGATGAACCCTTGGCGCCCTCAGAGAAGCTGTCCCTCATTGCAACAGAGGCCTCCTCGGAAGGACACTCCCACAGCGAGCAGCCAAAGGGAGCGTTCACCTGTCCCAATGGGGGCCAAGTGCCTCCCAATACCTCTTTAGACAGGGTGAATGGGCTGGTCAATGCTCAGCCACAGTACACAGATGGCTTGCACAGAATCAGTTTGTGTTACAGATCAGGTAGTGGCAATGGTGATGACACAGATACATTTTCTGATGACCAAAGCTCCTGTCAGGATGAGTGCAGTGAGGACGGTGCACTTGCTGAAGATCTGGAACCCCCTGAGAGCTCAGAGTGGACGTCAAAACCCACCGTCTGTAAACAGCCTTGTATTCTCATCATGGACTCGTTACGTGGCCCTGCCAGATCTTCTGTCATTAAAACATTACGAGAGTACCTGGAGGTGGAGTGGGAGGTGAGGAAAGGAAGTCGGAGGAGTTTTGGGAAGGACCAGACAAAGGGTTCTATCCCACATGTGCCTCAGCAGGACAACTTCAGCGACTGTGGAGTCTACATTCTGCAGTATGTGGAGAGCTTCTTCGAGAATCCACTTACCAGCTTTCATCTCCCGGTTAACCTGGAGGAATGGTTCCCGCAGCAACGGATGAAGACGAAACGCGAAGAGATCAAGGAGCTCATCTTAAATATCCAAGCCCAACAGGAGATGGAGGCGGGCCAGGGCTCAGCCAAAGGCTCCCCTGGAGGACAGGAGGTGGGAGAAGAGGATACAGGGGAAGGTGTAGAGATTCAGAACCTGCCTGTCAGCCCCTGAGGTGCACTGTCTAGTCCGACACTGCTACCTACTTACCTCTTTTAATTTAACATGATGGTCCTATCTATCGGGTGGGTCTCACGCTGCCTGGCCAAGCCTGGATGGaggtctgcctgcctgctgcctgggCCAAGCCTGAATGGGGATCTGGAAGTATGCCTGCCTGCTGCTGGGCCCAGCCTGGATGGAGGTATGCCTGCCTGCTGCCGGGCCCAGCCTGGATGGaggtctgcctgcctgctgccgGGCCCAGCCTGGATGGaggtctgcctgcctgctgccgGGCCCAGCCTGGATGGaggtctgcctgcctgctgccagGGCTAAGCCTGGTTGTACACTGCTGGATTACTCTCCATCTCCATTATTTCGTAACTGCCATATTCCTTCCATTGACAACGaaacaaaacattttaaattTGTATTGAATAAAACATGTTATATTCTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU771884 lncRNA upstream 169909 15629598 ~ 15684714 (+) False G677648
TU771883 lncRNA upstream 169909 15682480 ~ 15684714 (+) True G677648
TU771766 lncRNA upstream 265775 15588355 ~ 15588848 (+) True G677539
TU771711 lncRNA upstream 270357 15503599 ~ 15584266 (+) True G677488
TU771707 lncRNA upstream 354415 15499982 ~ 15500208 (+) True G677485
TU772634 lncRNA downstream 266028 16154550 ~ 16154784 (+) True G678305
TU772638 lncRNA downstream 267782 16156304 ~ 16156673 (+) True G678309
TU772661 lncRNA downstream 276676 16165198 ~ 16165428 (+) True G678332
TU772662 lncRNA downstream 277384 16165906 ~ 16166126 (+) True G678333
TU772655 lncRNA downstream 332830 16221352 ~ 16280431 (+) True G678326
XM_021611651.2 mRNA upstream 371002 15476954 ~ 15483621 (+) True crnkl1
NM_001124224.1 mRNA upstream 577692 15274628 ~ 15276931 (+) True nkx2.1b
XM_021611645.2 mRNA upstream 594292 15258311 ~ 15260331 (+) False LOC110529464
XM_021611642.2 mRNA upstream 716438 15135212 ~ 15138185 (+) True LOC110529462
XR_002474386.2 mRNA upstream 730573 15119106 ~ 15124050 (+) True LOC110529460
XM_036984869.1 mRNA downstream 4054 15892576 ~ 16023051 (+) False LOC110529476
XM_036984870.1 mRNA downstream 4054 15892576 ~ 16023051 (+) False LOC110529476
XM_036984872.1 mRNA downstream 4054 15892576 ~ 16023051 (+) False LOC110529476
XM_036984874.1 mRNA downstream 4054 15892576 ~ 16023051 (+) False LOC110529476
XM_036984871.1 mRNA downstream 4055 15892577 ~ 16023051 (+) False LOC110529476
TU771192 other upstream 594633 15258479 ~ 15259990 (+) True LOC110529464
TU771032 other upstream 747480 15105603 ~ 15107143 (+) False G676919
TU770444 other upstream 1095699 14755998 ~ 14758924 (+) True LOC110529454
TU770214 other upstream 1491652 14360577 ~ 14362971 (+) True G676226
TU769658 other upstream 1998341 13855660 ~ 13856282 (+) True G675705
TU772775 other downstream 496280 16384802 ~ 16385945 (+) True G678417
TU772798 other downstream 498928 16387450 ~ 16388077 (+) False LOC110529493
TU772802 other downstream 498928 16387450 ~ 16388236 (+) False LOC110529493
TU772807 other downstream 498928 16387450 ~ 16388336 (+) True LOC110529493
TU773135 other downstream 1004637 16893159 ~ 16894835 (+) True LOC110529505

Expression Profile