RNA id: XM_036984878.1


Basic Information

Item Value
RNA id XM_036984878.1
length 1863
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110529480
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16271404 ~ 16281281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATTATCGGGACAGGAGTGAAAACCCGACCTACCCCGGGAATcgtagattttttttcttttttttgtaacACCCTGAAATCAGACAAAATCAACACCGTGCACCTTAGTGAACTATCAAATGGACTGGTAGCACACAGTGACCTAGATGAAAGGGCTATTGAAGCGTTGAAAGAATTTAATGAAGAAGGTGCTCTGCAAGTCCTGCTTCAGTTTAAGGAAAGTGATCTGTCGCACGTGCAAAACAAAAGTGCGTTTCTCTGTGGAGTAATGAAGActtacagacagagggagaagcaAGGGACCAAAGTTTCAGATTCCACAAAGGGACCAGATGAGGCAAAAATAAAGGCTCTGCTTGATAGAACCAGCTATACACTTGATGTGACAACGGGTCAGCGCAAGTATGGAGGCCCCCCCCCAGAGTCTGTGTATTCAGGTTCTCAACCCACTATTGGAACAGAGATATTTGTTGGGAAAATTCCTCGAGACTTGTTTGAGGACGAGCTGGTGCCGCTCTTTGAGAAGGCGGGACCTATCTGGGATCTACGTCTAATGATGGACCCACTTAGTGGCCTGAACAGGGGGTACGCCTTTGTCACTTTCTGCACTAAAGAGGCTGCCTCAGAGGCAGTAAACCTGTGTAATAATCATGAAATACGCCCTGGCAAGCACATTGGAGTGTGTATATCTGTTGCCAATAACAGGCTGTTTGTCGGCTCCATCCCCAAGAGTAAAACGAAAGAGCAGATGGTTGAGGAGTTTGCTAAAGTCACAGAGGGTCTTAATGATGTCATACTGTACCATCAGCCGGATGACAAAAAGAAGAACCGAGGTTTTTGCTTTTTGGAATACGAGGACCATAAAACTGCTGCTCAGGCCAGACGCAGGCTGATGAGTGGCAAGGTGAAAGTCTGGGGGAATGTGGTTACTGTGGAATGGGCAGACCCCATCGAGGAACCCGATTCAGAGGTCATGGCCAAGGTCAAAGTTTTGTTTGTCCGAAACCTTGCGAACAGTGTTACGGAAGAAATACTGGAAAAATCATTCGGCAAGTTTGGTAGACTGGAGCGAGTGAAAAAGCTGAAAGATTACGCGTTCATTCACTTTGATGAGAGGGACAGTGCAGTCAAGGCATTGGCTGAAATGAATGGCAAAGATCTAGAGGGAGAGCACATTGACATAGTCTTTGCAAAGCCCCCTGATCAGAAGAGGAAAGAACGCAAAGCTCAGAGACAAGCAGCCAAAACAAACATGTATGATGATTATTATTACAACTACGGCCCCCCTCAGTTGCCCCCTCCCACAAGAGGTGGAAGAAGTAGAGGTGGTGGTAGGGGAGGGTATGCTTACCCCCCTGACTATTATGGCTATGAGGATTACTACGATTATTATGGTTATGACTACCACAATTACCGTGACGGATATGAGGACCCCTACTACGGCTATGATGACTATCAGGCTCCCGCTAGAGGAAGAGGGGGCAGAAGTGCCTGGGGGCCATCACCAGCCAGAGGCCGAGGCGGTGCAGGTGCTTTCAGGGGCAGAGGTGGCTTCTCACCGCGTGGCGGTCCAGGATCAAGCAGAGGAGGTGTACGAGGTGCCAGAGGAGGTGTGCAGCAGAGAGGCCGCGGCGGGGTACGTGGTGCAAGGGGTGGCCGCGGTGGAAATGTAGGAGGAAAGCGCAAAGCTGATGGGTACAACCAGCCAGATTCCAAGCGGCGCCAGACCAATAATCAGAACTGGGGCTCTCAACCCATTGCTCAGCAACCGCTCCAAGGTGGTGATCGTTCTGGTAACTATGGTTACAAATCTGACAACCAGGAGTTTTATCAGGATTCTTTTGGGCAACAGTGGAAGTAG

Function

GO: NA

KEGG:

id description
K13161 HNRNPR; heterogeneous nuclear ribonucleoprotein R

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU773366 lncRNA downstream 19493 16248881 ~ 16255432 (-) True G678962
TU772646 lncRNA downstream 114416 16160207 ~ 16160509 (-) True G678317
TU772644 lncRNA downstream 116524 16158170 ~ 16158401 (-) True G678315
TU772642 lncRNA downstream 117093 16157607 ~ 16157832 (-) True G678313
TU772636 lncRNA downstream 120022 16154476 ~ 16154903 (-) True G678307
TU773412 lncRNA upstream 2492 16283712 ~ 16283918 (-) True G679003
TU773364 lncRNA upstream 3336 16284556 ~ 16293203 (-) True LOC110529483
TU773363 lncRNA upstream 4589 16285809 ~ 16288529 (-) True G678959
TU773417 lncRNA upstream 17170 16298390 ~ 16299479 (-) True G679008
TU773438 lncRNA upstream 101654 16382874 ~ 16383170 (-) True G679027
XR_005052790.1 mRNA downstream 3869 16246398 ~ 16271056 (-) True LOC110529478
XM_021611662.2 mRNA downstream 3872 16246398 ~ 16271053 (-) False LOC110529478
XM_036984876.1 mRNA downstream 3872 16246398 ~ 16271053 (-) False LOC110529478
XM_021611661.2 mRNA downstream 134472 16136898 ~ 16140453 (-) True LOC110529477
XM_036984868.1 mRNA downstream 215663 16021030 ~ 16059262 (-) True LOC110529191
XR_005052803.1 mRNA upstream 3336 16284556 ~ 16288617 (-) False LOC110529483
XR_005052796.1 mRNA upstream 3336 16284556 ~ 16288640 (-) False LOC110529483
XR_005052802.1 mRNA upstream 3336 16284556 ~ 16293204 (-) False LOC110529483
XR_005052795.1 mRNA upstream 3336 16284556 ~ 16293205 (-) False LOC110529483
XR_005052798.1 mRNA upstream 3336 16284556 ~ 16293205 (-) False LOC110529483
TU770677 other downstream 1758397 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 1986580 14287849 ~ 14288345 (-) True G676178
TU770045 other downstream 2067300 14206987 ~ 14207625 (-) True G676077
TU769793 other downstream 2288817 13983626 ~ 13986108 (-) False G675834
TU773511 other upstream 151401 16432621 ~ 16433014 (-) True G679087
TU773640 other upstream 343870 16625090 ~ 16630259 (-) False G679210
TU773642 other upstream 343870 16625090 ~ 16630259 (-) True G679210
TU773944 other upstream 832323 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 2510010 18791230 ~ 18792137 (-) True G681659

Expression Profile