RNA id: XM_021611737.2


Basic Information

Item Value
RNA id XM_021611737.2
length 2545
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110529501
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16721162 ~ 16758117 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTCCTGTTTACGTTTATCCAGTGACATCACACGACTAACATTTTTCTTCGAACAGGTCATCGTCCCACCAAACTTGTGCCACGTCAGGATTTACGTTGTAGCTAACTAATTGATATGACAGTTAGCAAACTAACTGCATACGACTTTTAGCTGTTGCTGAGCTTTACCGAATATACTGTTCGAATGTTTAGGACTTTTCAGACGAAGCAAAAGTCAGTGTTAGCTAGCTCCTAGCTAGCTAGTAAAGTCAGCTGTCTCTCGTAAACATACACCAGCTACATTTTCAGTCCCGTTGACTTGTTAAAATGGAGAACAAATACAACCTGAAAAGCCCAGGGGCAACGGAAAAAATacatagcgaatggaggacgctttcctggggttcattttcatgccagccagCTGTGAAGAGGCTGATGAAGGAGGCAGCTGAACTGAGGCACCCCACAGAGCACTACCACGCCCAGCCACTGGAGGATAATCTGTTTGAGTGGCACTTCTCTGTCCGCGGGCCCCCGGACTCAGATTTTGACGGTGGGGTTTACCACGGCAGGATCGTGCTGCCCCCGGAGTATCCCATGAAGCCCCCCAGCATCATCCTACTCACACCCAATGGAAGATTCGAGGTGGGAAAGAAGATCTGTCTGAGCATCTCTGGCCATCACCCGGAGACATGGCAGCCATCTTGGAGCATCAGAACGGCACTAATAGCTATAATCGGATTCATGCCAACCAAAGGGGAGGGTGCAATCGGATCCCTTGATTATaatccagaggagaggagaggcctggCCAAAAAATCCCAGGACTTCTGCTGTGAGACCTGTGGCTGCTCCTTGCTCTCTGCCCTCCTAGGTCCCTCCCCCACTAACCCCAGTCCAGATGACCAAGAGGACCAAGAACTCGCCCAGCAGATCAACTTCAAGGCAGAAGCCAGGCAGGCCAGTGAGAGCACAGGGGCAGAGAGCGAGCCCCCCACAGACCCCCGGGGAGAGATGTCCACCTCggggggacaggaggaggaagagacccACGCTGAGCAGCAGGCCGATGCGGCTCCAGCTGCCAGTGAGGACGAGCCATGTCCCACAGCCCCAAGCAGCCGTTCTCTCAGCCCCCACCAGCGCCGGGCCCAGCAGCACCAGAGAGAGTCCCCCAGCAGGCCCACCTTCCCTGCCTTCCCCCACACCGCCACCCCCCAACCCCCTCAGGACGCCAGCCACACAGGCTCTGTGGTGCTCATCATGGTGCTCGCCCTGCTCCTGGCTGCCCTCATCTTCCGCAGGATCTACCTGACCAACGAGTACAAGTTTGACTACGAGCTGTGATGAAACTGACCTGAACTTCCCCAGACCACCAGACACCCTAGCTGGCAACAAACTGACTTTATCTCTTTACATTGCCAGCCTAGAGCCCTGGAAAACCTTCTGTTCATAGAGGGTTAGGCATAGCCTTGGTGACTGTTTCTCCCACTAAGTAAAGAGGGCTTGCTTTACAATGAGGGTAGCCTGCATTCCTGTGTAGGATGTGGTCCAACTCCAAGGTGTCTTTTATTACTTTGAATTGACTCTAAACTGTATCACATTTTAAAGATAGGTCCAAACCTTTATAGAACACACACTTTGGGCTGTATTCACAAAATgtctgagtaggagtgctgatctaggatcaggtgccCCATGTCCATATAATataattcattatgatctaaaataaaaatagatCCGCACTCCTGAGGTGCTTTATGAATACGGCCTGAATCTCCACTTTTAATTGTGTCAGGCAACTGTTTATCATGGACTGCTGCTTGCTCTCATTTAAACAAGTTAATGCTGTATCATATGACTTGTAAACAATGAAGACTATTACATTGATTTGTTTGTCTCAAATAATTAATTGTGCACAGGGAATCAATATGCATAATAAATTGTATACAGATAAGATGCTAATTATTTCTGCTCAAATGTTACGCCATTGACATTTTCATTGGTTAGCCAATTCTCCGGTGGTTTCTACTTTATCGGCAGCAGATACAGTGCAGCCAACTATACATATACTTCTGTCAATCTTAGCCTGAGTGTCAGtttgtttctgctctcttgccaatTCCATGCTGTTCATACCTGGCGTTATCACTGATTGGGTCCAAAGATAGTGAGACAGGGATGAGGCAATAAACCATTGTCAACACAAGCGCTTCAGAAAGGGAGATTATACAAGAAAGAGGCTGTATGACTTTAGGCCCACCTTTTTGAGGTTCTCACAAGAAATGGATTGGGGACTAATGCAAAGCTATTTAAATATTGTACTTCAAGGAAAATAAAATGTCCAGAGTAAGTCCTCTCTCTAAGTTGTGTTCTCATGATATTTGAGCCATGTATAACAGCTTTGCTCATGTGAATACTGAATCCATTGCAGACAACTTAATGTCTTAAGATGGCATTCATCCATCGTTTGACTGTGTTTGAATGCTACATATGAACATTGTATCAGAAAATAAATGccttgaataaaaaaataaaatgttcctGTGTCACAGTTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10578 UBE2J1, NCUBE1, UBC6; ubiquitin-conjugating enzyme E2 J1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU773536 lncRNA downstream 252861 16468003 ~ 16468301 (-) True LOC118965497
TU773535 lncRNA downstream 253213 16467628 ~ 16467949 (-) False LOC118965497
TU773531 lncRNA downstream 258110 16462828 ~ 16463052 (-) True G679107
TU773529 lncRNA downstream 259008 16461922 ~ 16462154 (-) True G679105
TU773528 lncRNA downstream 259297 16461484 ~ 16461865 (-) True G679104
TU773784 lncRNA upstream 60814 16818931 ~ 16821129 (-) True G679332
TU773782 lncRNA upstream 67680 16825797 ~ 16830613 (-) True LOC110529503
TU773823 lncRNA upstream 144136 16902253 ~ 16910145 (-) True G679364
TU773796 lncRNA upstream 167795 16925912 ~ 16927054 (-) False LOC110529508
TU773797 lncRNA upstream 206370 16964487 ~ 17037933 (-) True LOC110529508
XM_021611736.2 mRNA downstream 471 16685761 ~ 16720691 (-) True LOC110529499
XM_021611735.2 mRNA downstream 47018 16639846 ~ 16674144 (-) True LOC110529498
XR_005052818.1 mRNA downstream 215401 16467419 ~ 16505761 (-) False LOC118965497
XM_021611733.2 mRNA downstream 276149 16439558 ~ 16445013 (-) True LOC110529495
XM_021611732.2 mRNA downstream 276158 16439558 ~ 16445004 (-) False LOC110529495
XR_002474399.2 mRNA upstream 67902 16826019 ~ 16830629 (-) False LOC110529503
XM_036984898.1 mRNA upstream 72634 16830751 ~ 16893020 (-) False LOC110529504
XM_036984899.1 mRNA upstream 72634 16830751 ~ 16893020 (-) True LOC110529504
XM_021611751.2 mRNA upstream 167780 16925897 ~ 17037936 (-) False LOC110529508
XM_021611752.2 mRNA upstream 297998 17056115 ~ 17081578 (-) False LOC110529509
TU773640 other downstream 90903 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 90903 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 288148 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 2204634 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 2432817 14287849 ~ 14288345 (-) True G676178
TU773944 other upstream 355426 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 2033113 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 4720649 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 5162310 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 5162310 21920427 ~ 21924908 (-) True LOC110529207

Expression Profile