RNA id: XM_021611751.2


Basic Information

Item Value
RNA id XM_021611751.2
length 8293
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110529508
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16925897 ~ 17037936 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAAACAGCGGAGACTGAGCAGCACGCTGCGCAAAATcgtcacacacactgacatttgCTGAAGAAGAACAATAACCATTTTTATAACTAGAAAACGTAATTTTTATAAAAAAGAAATAAACGAATAGTGTAAAGCAAATGTTTTCTCCCTGCAGCCGGGGGCTTTAGGAAACTGCAAGGAAGTCAtcatgtgaagaaaaaaaattgttaaacGGACAAAAGGGCTGGATTACAAGAAAAAAAGCGAAAGTTAAAAGGGCGTGAGCGGAATGTCCGTGGATGAGAAGCCTGAAGCCCCCATGTACGTGTATGAGTCGACGGTTCATTGTACCAATATCCTCCTGTGCCTGAACGACCAGCGGAAGCAGGATATCCTGTGCGATGTGACTGTCCTGGTGGAGGGAAAGGAGTTCCGTGGCCACCGGGCCGTGCTGGCCGCCTGCTCAGAGTACTTCTTGCAGGCTCTGGTGGTACAGGTCGAGAATGACTTGGTCCTCAGCCTACCTGAGGAGGTCACTGCCAGGGGATTCGCCCCATTGTTGCAGTTTGCCTACACTGCTAAGCTGTTACTCAGCAGAGAAAACATCCAGGAGGTCATCCGCTGTGGCAAATTCCTGCGCGTGCACAACCTGGAGGACTCGTGCTTTCGCTTCCTGGAGGCCCAGCTCCGCAGTGAGGAGGATGGCCTGCTGCTGTGCCACAAGGTGGCGCCGGCCGAGGGCAACCACAAGACCGAGGACGAGAACATGCAGTCTGAGACGACAACAAAGGCAGCCTCCCCCCAGGCACGCCGGCGCTCTGAAGCCCTTTCCTCCTTGCGGCGTGCCCCGGACAAGGACCGGCTACCCGTGGCGGTGCCCAGTGACTTCAGCAACGTACGACTGGACTTCGACAGACACGGAGCATCCGACCTCCCCCGCTGCCCCAAATACAGGAAATACCAGTGGGCCTGCAACAAGCACAATAACGACACCTCCTCACACACCAGTACCTCAGGTTTACCAAGCACATTATTATTAAAGGAGACCAGCGGTGGCATCAGCGGCGAGGCGGTCCGGGGCCAGAGCATGTCGCCGGTGGCAGACATCAAAGTGGAGCCGCGGGCAGAGGAAGAGGCCATCTCGCTGTGCCTGTCAGGGGACGAGCAGGGCGGCCTGGACAAGGAGACAGGCATGGAGATGGACAGTGTCCCAGTATTGTCCGCCTCCTCCGCCAAGAGGAGCCAGTCCCCCACCTGCCTCCGCGCCTTCTTCAAAAAAGGAGCAGACCTGCCGGGTCTGCCCAACGTGTCGCAGCAGCTATTTGCCAACAGACTCACCAGCGTCTGCCCCCAAGACAAAGGAACCACTCTGGAAGATCACAAAACAAAAGACTTCAGGCCTCTCAATGCTGGGGAGCTGGGCCTGTCTGTTACATCCCTGAAGGAGGTAGACGGCTTCCCTCTGAGGCTCTCGTCGCTGAAGTCCACCTCCTGCGATGGCGTCTGTAAACAGGAAGTGGAGCTGGACCGCCGCAGTGTCATCTTTTCCTCCTCAGGGGCCTGTGACCGTCTGGGCTCCCCGACGCATTCCTACCCCGGCGGGAGCTCTTTGGAGATGGAGCACTCGGAGCACACGTCAATGGGCCTGTGGGCTGGTGCCAGCCAGTCCCTTCCCAGCTCCCAGACCTACTCCCCGAGCAGTGCCCCCTCCCTCGCCTCCGCCACCACCGAGCCCCCGCCGGTCCTTTGTCGCCCGCTGCCAAACACCAGCTGCCCAGTGCCAATCAAGGTTTGCTCGCGCTCGCCGCCCTCTGAGACCCGCACACGGACCTCCAGCTCCTGCTCCTCCTACTCCTACGCGGAGGATGGGAGCGGCGGCTCACCCTGCAGCCTGCCCCAGTTTGAGTTCTCCTCCTCGCCGTGCTCCAACGTGGCGCTCCGCCTCGCCGCCGACCAGCAGGAACAGGGCGTGATGGGGGGGGACACCCTCTTCAACCAGGTTCGCCCCAAGATCAAGTGCGAGCAATCGTACGGCACCAACTCCAGTGACGAGTCGGGATCCTTCTCCGAGGGTGACAGCGAGTCGTGCCGAGTCGATCAAGGGCGAGAGGTAAAACTTCCTTTCCCTGTTAATCAAATCACAAATCTTCCACGGAACGACTTCCAAATGATGGTAAAAATGCACAAACTGACCTCAGAGCAGCTGGAGTTCATCCATGACATCAGGCGGCGGAGTAAGAACCGCATCGCAGCGCAGCGTTGTCGCAAGAGGAAGCTTGACTGCATCATGAACCTGGAGTGCGAGATCAGAAAACTGGTGAACGAGAAGGACAAGCTGCTGACGGAGAGGAACCAGCTGAAGGAGTGTATGGGCGAGCTGTGGGAGAACTTCTCCTGTCTGTCCCAGGAGGTCTGCAGGGACAGACAGCTGAGTCCGGAGCAGGTCCAGTCCCTGAACCACCACTGCCCTGTCCTGAAGCCCGGCACCACCAACGCCACCACCACTGCCAGCAACGCTGCCTCTAACAGCATTGACCTCATCACCCACTCCAGCTCAGCCACCCCGGAGCCCAGCTTCCTCAAGTCCTCCGGGCCCTCAGAGAGCGAGCCTGATTGGGCCATGGGCAACGGGGCTGATGGGGGGCCAGGTAGCAATGAGGCGGAGGGCCAGGAGCCAAGTTTATACATGGAGTCGGGGTTCTCGTTCAATGAACAGTCCAATCAGACGGTGACGGTAGACTTCTGCCAGGAAATGACTGATAAATGTACAACTGACGAACAGCCGAGAAAGGACTGTACTTAGTAAACTGTGGTTTTaatgttttttattatttaatttcTAGTTTTTATTTTCTTCTGACAAACCCCTTCCTCTGGGTTGGTGAGATGTTCAGCCTCTACCAGTGTTCTTTAAACAACaggtttttttgtttgtttttatttatgtCTTTTTGTTGTCTTTTTATAGGTTGACACTACAGTTGTCTTAACAGCAATACTGTTCTCCAGGTATTCTCCTCTCTGTAACCATGACAGAATAGGGACTTCCCACACCAAACTCAGCTCACAATGGTGCTCCACCATGCCCCGTCAGGAAGCAACCTCTACAGTGGACACACTGTTCTCTATCTATACAGTCTACTCACAGGGATGGGCAAAGATCACATCTTCAATTCAAACCTCAATGGACCTAACAGCAGCACTCTTTGTCTCTCGATCTACCTACagtttctatctctctttctttgtctttctatttctctcgctctccctttctctctctctctgtctctctcactctctcctactctgTCTATTTTCCTATCACTATTTCTACATCTAACACTtccactctatttctctctctcactatctttctaattccctcactctctcttgtGGCTCTTGTCACAGCAATTCAAACTCAGGAAAATATATTCTGAATGTTCAACATGATTCATGAAAATAAGAATTCAGCTTCTGTATATGAGAGGTTTTTGAAGCAGACTGTAAATGTTCATatgcaaaaatgtattttgtacagCAAAACTCTGTGTACAGACAGTACCTTAACATTCCTCCTTTGCCTTCCTCAGCACTGAAACAAAAGAGAAAAACAAACGATTTGGCAGGTGGTTCCCAAATAGCTATGTTCCCATACATCAGCAAAATCATTGTATTTGGATGTTGTAATGGTAACTTTCAAGTACTTGCTTGGGCAGAACGTAATAACGTATAATGTATGGCGCATGGTGACTGTCACAGTAATATTGTACAGGTAGTGGCTTAGACATTTCTTTTTCACTGGGGTTATATCAAGTACCTTTTTGCTAAGGGAAAATATTTGCTTAGCTTTTTCCTGATTAAAGGAAAATTCGACATAAAGGTGGGTGTTCTTAAACTCAGGAAATcagcttgacacacacacacacacacacacacggatgttGCTGGCGAGGACAGTGTAAAGTATGTTATTAATCCGTGGCTTGCGCAACATCCTTTCAAACTTTGACACCTCTTTAAATGTGAAAAATAGTTTAGGCTTGTTGTGTTTTTGAGGAAACTTTCTTTCTTTTTATCAGTATTTAAAGATGCTTTATGTATGATGGTGAACCCTCTCAGACACCCTTTGAATATCTTCAGTGTTTATGTTTCAATGTGGTCGAGAAATTTGACAATAGATACCTTTTCAAGCTGAGGGACAGATATTCTGTCtgtaacaaaaaaacacacacaaaatatttaTATTTGACTAAGGATACTTTCTCCAATGAATCTGGGCTCAAGATCAGGCACTTTCCTTCCAGCACCAGACACTCCATTGTAACTAGATCCTATAGCACTTCATAGAGGGTCTACGTCAGGTTCAGAACCCTGAAAACACTGATGCTGGAGCACTTGAATTGGCACTTAAATTAAAACATCTTATTGATATAAATATATCTATGAAGACATTATATTCAAAAACCTAAAGCAATCAGATGTATTATAAAAAAGAAAGCCAACATAACATGTAGAGAGTGTTCACATCTTATATTTGTATTTCTTTCAGAATGAATCATTTATTTGGGACTTGAGTTCATGTGAAAGCATGATAGTAACATGTTTGCCCTGATTGTACATTTGTTGAAATCATAATATTCTGTGATGTGAATGCATGCTGCCTGTATATTTGACCTAGTTATTTTGTCTAGCTTATGTTTGCTTCTAACAATAGTCCTCAGCTAAATTATTTAGTCCATCTTCTGATGAACAATATTTAAGCAGTAAggtacctcgggggtttgtgatatatggccaatataccagagctaagggctgttctaagggctgttcttaggcaatCAGGAGTGCCTGGatgcagcccttagccgtggtatattggccatataccacaaaccccagaggtgccttattgctattataaactggttaccaacgtaattagagcagtaaaatgaaataaaatgaaaatacaaaaaatgagaaatagagacagaacCTGTCTTTACAGTGAGTGAATTCAATTGGAATAAAAAGCTTTACTCATAGCTTTAACTTCATTCAGGATGAAAAGTTATACAGTGTCGGAAAGAGCGATATTATAAACTgagtggtttgagccctgaatgctgattggctgacagccgtggtatatcaaaccgtataccacgggtatgacaaaacatgtactttaactgctctaattacgttgataaccagtttataatagcaataaggcaccttgggggtttgtggtatatggccaatataccacagctaagagctgtatccaggcactcggCGTTGCGTCGCGCATAagcacagcccttagccatgataTAGCGCCCCccccgtgccttattgcttaaatatacaccTTGATGACTGTCTGCAAATTCTTATTGGCGTTACTCTGTCGCACCCTCTTGGACACAGCTGTGTAATACTCTCGTCTTGACTGATATCGAAAGCTGTTGTGATATTAGAGTGCAGCTTTGTAGAATATGTCTGTGTTTCGCAGTGTGCTAGGCTGAGTATTTGACCATTTAGATAAGGTTCCCTAAGATTTTAGTTAGATCCGTATACAGTCATACACAGACAACTAAAACATGCACCCAAATATTAATACACACACAATGTATGTCCAATGGCGTCTtttccccgggcgccgatgacatggatgtcgattaaggcagccccctgcacctctttgattcagaggggttgggttagatgtggaagacacatttcagttgaacgcattcagttgtacacctgactaggtatcccccttcccttaTGTAAGGAAGGAGTGTAGAGCAGTTGTacacctgactaggtatcccccttcccttaTGTAAGGAAGGAGTGTAGAGCAGTTGTAATTGTTGTTTGTGAGGTTCTTCTTCCACTTTGGCTTTTCTCTGATTCATATTCTATCACTGAATTGGAACAATATACATCAGTCTCCATTATCAGGTACAAAACAGGAAACACATTTGTCAAATCATATACAATTCCTACCCAATAAATGTACATTTACTTTCTCGTTTTTGACGTAAAAGTGGAAAGCATAATGGTCCACCAGAAAAGCACACTCTCATTAGGCTACACTTTGACAATGTGGGGGAAAATGGATTGAAATTCATAAAGTTTCTATTGTCCTCGGCCAATCAAAGCTATACCAACAGATATCTTTCAATATCTGTTGTTAGATGGCCTTATAATGCTATTAGGATTAATATTAATGTTATTCTTTGGATAGCAATGAGTGCATAGCCTATTTCTGGTTTGTACTGTACGTACAATAATTCATCATTGTTTATTCTCTACCTAGAGCCCCAAGATTGATATACAGTAAAGGTTGGTGGATGCAGATAgaagcccactgggcacagacattatttcaacatctagttttgatatacatttggttgagttgtcgaCTAATGTAAATGCAATGTGAAATCAATAAAAAACGTTTACCAtgccattggatttaggttaaaagctGGGTGAAAAAATATGccaatccaatcagttttccacattgattcactGTCACCACATTGAATTGTTTTGTTGAAATAACGTGGAAAGAACATTTAtgcaaccagtttttgcccagtgggaggtGATACAAAGTAATGAGGGGTTTTTAATGTAGCTGGTCAATTGCCAGTCCAGACCTCTTAGCTCTCTAGTCCTGAGAGAGCTACTCCATGCTTGCTATGCTGTATGGGGTGTTACTATGGTGACCAATGGTTGAAAGTAGTACATGATCAGGTCATCTCTACAGTTACCCCAAGCATTACgggtcaaataagcttgttgtgtGTCATCATCTCATTCACACAGAGATTTGTCTGGTTGACCTAAACCAGGACTAGTCATTGGTCTTGTATATCGTCTCAGGGTGCCGAGCATTTTATTTCTCCATTTCTGAATCTGTAGCAGACTTTTGTACTTTAGCTGGTTTCTGGCTGTGTTTGAGTGTCTGAAAGTTTAGCTCACTTCTAACCTCTGGTCTTATACTCCTGAAGCTAATTTCTACAAATGCGGAATAATAAGCTTTGCACAATACAGATGAAAGTCATTAAGAGCTGCAGAGAGAGTACTCAATACATTGGAGTaaacatacatatatattttaattctGTTTTGGTAGTAAATACAACAAAATGTTTCTCGCTCTCAAGTTCCTTACCTCTGCAGTTTTTTACAAGCCAAAACTCAAAAAACAGTAATGTTATTTGATTTGTTAGCTGGCTATGGTAATTAGTTGGTGGATATTTGTTGTAAAGCTAGATGCATTGAATTCATTATCTTTTTGAGAGGCTTTTGTGCTGTATTCATTTCTCGTTTTGTTtcactgttttgtttgttttagttgtttTTGTGTGCTGCTTTGAAAGAAAAAACACTGTCTGTCCAACTCCAAAGGTTGTTCTTTTGAAAAGATGAACAAAGCTTGCCTTTTTCACAAATTGCTCAactttataatataatatactggttTCCTGATTGAATGCACAGGCTGAGATCATTTTAGGAGTAAAAGAAAagtttgaaatgtttacaaaacgGTATCACATGTCATGATGTGTTTATTACATTTGTCATGTAAATAGAATTTGCTAGGTTAAAATTGGACTGAAGGTTAGTTTTCTGTAAACAAAAAATGATGTGTTTTCTCAACTTGTCTTTTCATTCAACTGGGGATGTTTCAGAGTTACATGGATACAAGTGCACCTCCAATTTTTGCCTTAGAACTTGCAGAGGTCATAGTTCACATTCAAGTGAAGTGAGTGTATGCAGGGgcctacgcccccccccccccccatccctgaGTCACACCCAGTGCAGACCTTCTCACACTTATCTACCTGTGAAATCCTTCATACCTCTCATTACTGGTCAATGACTGTATCAGCCAACTTCATCAGGTGTTTTTTCTACATGCTTTTTACACAGATTATATGGATTATTGTATTAGTAGATTTTGGTTCATTATTTTTTATGTAAAAGCTCTTTTACATAATTTTTTCTCTCGTTTTTCTAGAACAGTTTTTTGTTAATATTGTCATTTTGAAATAGCTGTAATTTGCTTATTCTCTATTAAGAGTTCTTACTCTTTTCATTTTGAAATGCTACACGACCCTAATGAATTAAAATGACTTATTAACCATTTTAAACACGGTATTGTGCAAACCCCATTTTCATTCATTTCAATTGCTAGCGTTATATAAAGGACATTTTTGTCTAGACACCATTTCTGTTTATGAAATAAAGAAACATATCATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU773823 lncRNA downstream 15752 16902253 ~ 16910145 (-) True G679364
TU773782 lncRNA downstream 95284 16825797 ~ 16830613 (-) True LOC110529503
TU773784 lncRNA downstream 104768 16818931 ~ 16821129 (-) True G679332
TU773536 lncRNA downstream 457596 16468003 ~ 16468301 (-) True LOC118965497
TU773535 lncRNA downstream 457948 16467628 ~ 16467949 (-) False LOC118965497
TU773879 lncRNA upstream 16040 17053976 ~ 17100186 (-) True G679407
TU773936 lncRNA upstream 62495 17100431 ~ 17101124 (-) True G679463
TU773958 lncRNA upstream 91095 17129031 ~ 17129256 (-) True G679485
TU774106 lncRNA upstream 163318 17201254 ~ 17251247 (-) True G679623
TU774125 lncRNA upstream 184845 17222781 ~ 17227113 (-) True G679642
XM_036984898.1 mRNA downstream 32877 16830751 ~ 16893020 (-) False LOC110529504
XM_036984899.1 mRNA downstream 32877 16830751 ~ 16893020 (-) True LOC110529504
XR_002474399.2 mRNA downstream 95268 16826019 ~ 16830629 (-) False LOC110529503
XM_021611737.2 mRNA downstream 167780 16721162 ~ 16758117 (-) True LOC110529501
XM_021611739.2 mRNA downstream 167781 16721162 ~ 16758116 (-) False LOC110529501
XM_021611752.2 mRNA upstream 18179 17056115 ~ 17081578 (-) False LOC110529509
XM_036984900.1 mRNA upstream 18179 17056115 ~ 17081579 (-) False LOC110529509
XM_036984901.1 mRNA upstream 18179 17056115 ~ 17081579 (-) True LOC110529509
XM_036984903.1 mRNA upstream 384830 17422766 ~ 17498984 (-) False LOC110529510
XM_036984904.1 mRNA upstream 384830 17422766 ~ 17498984 (-) False LOC110529510
TU773640 other downstream 295638 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 295638 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 492883 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 2409369 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 2637552 14287849 ~ 14288345 (-) True G676178
TU773944 other upstream 75607 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 1753294 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 4440830 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 4882491 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 4882491 21920427 ~ 21924908 (-) True LOC110529207

Expression Profile