RNA id: TU773797



Basic Information


Item Value
RNA id TU773797
length 296
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110529508
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16925897 ~ 17037936 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAACAGCGGAGACTGAGCAGCACGCTGCGCAAAATcgtcacacacactgacatttgCTGAAGAAGAACAATAACCATTTTTATAACTAGAAAACGTAATTTTTATAAAAAAGAAATAAACGAATAGTGTAAAGCAAATGTTTTCTCCCTGCAGCCGGGGGCTTTAGGAAACTGCAAGGAAGTCAtcatgtgaagaaaaaaaattgttaaacGGACAAAAGGGCTGGATTACAAGAAAAAAAGCGAAAGTTAAAAGGGCGTGAGCGGAATGTCCGTGGATGAGAAGCCTGAAGCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU773796 lncRNA downstream 37433 16925912 ~ 16927054 (-) False LOC110529508
TU773823 lncRNA downstream 54342 16902253 ~ 16910145 (-) True G679364
TU773782 lncRNA downstream 133874 16825797 ~ 16830613 (-) True LOC110529503
TU773784 lncRNA downstream 143358 16818931 ~ 16821129 (-) True G679332
TU773536 lncRNA downstream 496186 16468003 ~ 16468301 (-) True LOC118965497
TU773879 lncRNA upstream 16043 17053976 ~ 17100186 (-) True G679407
TU773936 lncRNA upstream 62498 17100431 ~ 17101124 (-) True G679463
TU773958 lncRNA upstream 91098 17129031 ~ 17129256 (-) True G679485
TU774106 lncRNA upstream 163321 17201254 ~ 17251247 (-) True G679623
TU774125 lncRNA upstream 184848 17222781 ~ 17227113 (-) True G679642
XM_036984898.1 mRNA downstream 71467 16830751 ~ 16893020 (-) False LOC110529504
XM_036984899.1 mRNA downstream 71467 16830751 ~ 16893020 (-) True LOC110529504
XR_002474399.2 mRNA downstream 133858 16826019 ~ 16830629 (-) False LOC110529503
XM_021611737.2 mRNA downstream 206370 16721162 ~ 16758117 (-) True LOC110529501
XM_021611740.2 mRNA downstream 206371 16721162 ~ 16758116 (-) False LOC110529501
XM_021611752.2 mRNA upstream 18182 17056115 ~ 17081578 (-) False LOC110529509
XM_036984900.1 mRNA upstream 18182 17056115 ~ 17081579 (-) False LOC110529509
XM_036984901.1 mRNA upstream 18182 17056115 ~ 17081579 (-) True LOC110529509
XM_036984903.1 mRNA upstream 384833 17422766 ~ 17498984 (-) False LOC110529510
XM_036984904.1 mRNA upstream 384833 17422766 ~ 17498984 (-) False LOC110529510
TU773640 other downstream 334228 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 334228 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 531473 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 2447959 14511590 ~ 14516528 (-) True G676635
TU770156 other downstream 2676142 14287849 ~ 14288345 (-) True G676178
TU773944 other upstream 75610 17113543 ~ 17114528 (-) True G679471
TU776244 other upstream 1753297 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 4440833 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 4882494 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 4882494 21920427 ~ 21924908 (-) True LOC110529207

Expression Profile