RNA id: XM_036984904.1


Basic Information

Item Value
RNA id XM_036984904.1
length 6962
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC110529510
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 17422766 ~ 17498984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTTTAGCGTCGTCAATGGGAAGTGCACGCCAAGGTGGAAAAGCGAATACTGTCTAGCTAACTTCCATTTACAACATGGGTTCTACGTCGATTCCGTGTTTGTGGATTACATTTTGCCTTCATTTATGTTGTTTGATGAACACTGGAAAAGCGCAGAATGCGAAAGAAGTGATTCTGTTGGATTCCAAGGCACAGCAGACAGAGCTGGAGTGGATATCTTCTCCTCCTGGTGGGTGGGAAGAGATCAGCGGGTTGGATGAAAACTACACCCCCATTCGCACATACCAGGTTTGTCAGGTCATGGAGCCCAATCAGAATAACTGGCTTCGGACTAGCTGGATAGAGAAGGGCGATGCCCAGAGGATTTTTGTGGAACTGAAGTTCACGTTGAGGGATTGTAACAGTCTACCCGGTGTGGTGGGCACGTGCAAGGAGACATTCAACTTGTATTATCAGGAAACCGATTCGGAGGTCGGCAGGAATATACGAGAAAACCAGTACGTGAAAATTGACACAATCGCAGCAGATGAGAGCTTCACTCAGGGGGAcctgggagagaggaagatgaagcTGAATACAGAAGTACGCATCATTGGGCCGCTGTCCAGACGAGGGTTTTACCTGGCCTTCCAGGATGTAGGGGCATGCATCGCTCTGGTCTCTGTCAAAGTTTATTACAAGAAGTGCTGGTCCATCATTGAGAACCTGGCCACTTTCCCAGACACTGTTACGGGATCAGAATTCTCCTCTCTGGTCGAGGTCGAGGGCATGTGTGTCAGTGACGCAGAGGAGGAGGCCGATAACGCTCCCAAGATGCACTGCAGTGCAGAGGGAGAATGGCTGGTGCCTATAGGGAAATGTATATGCAAAGCTGGATTTCATCAGAAGGGCGATGCATGTGAACCATGTGGCCGTGGGTTCTACAAGTCCTCGTCCCAGGACCTGCAGTGTTCGCGCTGCCCAGCACACAGCTACAATGACCGGGAGGGCTTGTGGCGCTGCGACTGTGAGGACGGCTACTACCGGGCGCACTCAGACCCACCCTCTGTGGCCTGCACAAGACCTCCCTCGGCACCACAGAACCTGGTTTACAACATCAACCAGACCACCGTCAGCCTGGAGTGGAGCCCGCCGGCCGACATGGGCGGTCGCAACGACGTCACCTACAGGATTATGTGCCGGCGCTGCAGCTGGGAGCCCGAGGAGTGCGTGCCGTGCGGGGGGAACGTGGGATACTCCCCCCAGCAGGCGGAATTAGTGGACACCTACGTAAATGTGGTGGACCTACTGGCCCACGCCAACTACACCTTTGAGGTGGAGGCCGTCAACGGGGTCTCTGACCTCAGCCGCACCCAGAGGCTTTTTGCCGCAGTCAGCGTCGCCACCAGTCAAGCAGCTCCCTCCCAAGTCAGTGAGGTCATCAGGGAGAGAGTGCAGCAGCGAAGCGTCCAGCTCTCCTGGCAGGAGCCTGAGCAGCCCAACGGAGTCATCACTGAATATGAGATTAAGTACTATGAAAAAGACCAGAAGGATCGTATCTACTCCACAGTGAAGTCCAGATCCACGTCAGCCACAGTGAACAATCTGAAGCCCAGCACAGCCTACGTGTTTCAAATCCGAGCCTTCACCACGGCCGGCTACGGCACCTACGGACCCCGCCTGGAGATCACTACCAAGGAGGAGGCCTCAGCATCCACCATTGTCTCCAGCGAGCAGAACCCCGTCATCATCATCGCGGTGGTGGCCGTGGCGGGGACCATCATCCTGGTCTTCATGGTGTTTGGCTTCATCATTGGGAGAAGGTACGCTCTCGCGGGCCCCATTGACTCTCCACTGCTGCACTGTGGCTACAGCAAGGCAGACCAGGAAGGAGACGAGGAGCTGTATTTTCAATGCACCAAAACATACATTGACCCTGAAACCTACGAAGACCCGAACAGGGCTGTCCATCAATTTGCCAAGGAGCTGGACGCGTCCTGCATTAAGATTGAGCGAGTTATTGGAGCAGgAGAGTTTGGGGAGGTGTGTAGTGGACGGATGAAGCTCCCAGGGAAACGGGACACATCAGTGGCCATTAAAACCTTGAAGGTGGGCTACTctgagaaacagaggagagacttCCTTTGTGAGGCCAGCATTATGGGCCAGTTTGACCATCCCAATGTTGTCCATCTGGAGGGAGTGGTGACCAGAGGAAAACCGGTGATGATTGTGATTGAATATATGGAAAACGGCTCATTAGATGCTTTCCTCAGGAAACACGATGGTCAGTTCACAGTGATCCAGTTAGTGGGAATGCTGCGGGGCATAGCAGCGGGGATGAGATATCTCTCTGACATGGGATATGTCCATCGAGATCTGGCTGCACGAAACATCCTTGTCAACAGCAATCTCGTATGTAAAGTATCTGACTTCGGCCTGTCAAGAGTGATCGACGATGATCCCGAGGCTGTCTACACAACAACGGGGAAGATGCAGGATATAATGAATGTGATCTTTAGTCCAGCCATTGACCTGCATTTTACTGAACAGGGTGGAAAGATACCTGTTCGATGGACAGCAATGGAAGCCATCCAGTACCGTAAATTCACTTCCGCTAGTGATGTGTGGAGTTATGGCATTGTCATGTGGGAAGTCATGTCCTATGGGGAACGGCCTTACTGGGACATGTCCAATCAAGATGTGATAAAGGCAATAGAGGAGGGGTACCGCCTCCCTGCTCCCATGGACTGCCCTCCAGGCCTGCACCAGCTAATGCTGGACTGCTGGCAGAAAGACAGGGCTGATCGACCCAAATTTGATCAAATAGTTGGCATCCTTGATAAGATGATTCGCAATCCCAATACCTTAAAAACCCCTTTGGGAACATGCACAAGACCGATTAGTCCCCTGTTAGATCAGAGCACACCAGACTTCACGACGTTCCGCTCGGTGGGGGAGTGGCTGGAGGCCATCAAGATGGAGAGATACAAAGACAACTTCACCGCCGAAGGCTACAGCTCACTGGAATCTGTGGCCAGGATGTCAATCGAGGATGTGATGAGCTTGGGGATCACTTTAGTGGGACATCAGAAGAAGATCATGAGCAACATACAGACTATGAGAGCCCAGATGCTAAATCTCCACGGCACGGGCATCCAGGTGTGATGATAGACTACAGTGCCCCCTGTGGACAGGGGGGCAAAGAGCTATATAGAGCAGCGCTAGGGCAGAACTTCCCAGGATAATCATAACAAATCATGTGACGTGACGTCGTCTCCTGTGTCTGACTCTGTTTTTCCGGATGTTATCGGAATTAAAATCATTCCTTTGTTCCTTGGCAAAGGATTTAACCCCTCTTTAGAACGGGTACtaaggagagattgagagaataCTCCCTGGACATGATGCCGCTCTGAGAAACTCAACCGCAAATAGAGATGGAGCTTTGGAAAAGGAGTTTTATCCATATTACCTTGTTCTTTTAACCTAAtgaattttttggggggagggcaCCAAGAAAATGGATTTCActtaaaaaagaaaagaaatcCCCCCAAAACTTTTTTCCCTTGcagtgtttaaaaaatatattttttattctagTTTGTTCATTTTGTTAGTTTCAGAAGGCACAGTGATATGGTCTGGTACGTAAAGTAATCTAACATCTTTCTTTCGCGTTACAATTTTTTCCTCCTTTTATTTTGGACTTGACAACAGGGTAAACGTTCCCATCAAAAGGACAGGGAGGATGAATATGGTGTCTGAACATTTTGGTGGAGATGATTTCGACCAGTTTGTCTTGAGACACTACTGCCTGTTTTAACTGTTTGCAGTGAGTTGTGTTTTTTCTCCCTGATGTTTTTGAAGTGGAAATGGCATCCATCCTGCACCTCAGATCAGTGACTTCAAGGATAGTAGTATTCACTTGGTTTTTTCAAGCTTGTAAGAGTGGCTTGTTGTATGAATTTTTCTGAAGACAGATGCTCTCGTTGTATAATGAAAACATTTCAAATTTGTATGTAGGAATTACGAAACAGTATGACACCAACAAGGCAATTCGATTTCAGATTGATCACAACTTTTATATCTAATATCAAGCATCAAATTGGCAATGTTTATGTTTACCGCATGAATTATTTTACCTTATTGTCCAATATACTTTCAatctgaaatgttttgttgtttaattatttatttgaacgTTTCCGCAGACAGCACTATAGAAAGAAACGTAAAGAGACTTGATCCACCACAAAGGGTTTGAAATGCCTAAACAAACATATTATTTGTTGTTGCAGCAAATGGTATTCGTTTCCTATTTTGGTGAAAACAGTTGTCAAGGGTGAATCTATGAAAGGCGGTGTATGTTCGTTCTACAAGTAATTGTCCCTTAAAACGAATGTATTCCCATTCTTTTTCGGCACTTCTATGGCAAGTTTTTTTGCGATTCACCGAGACAGTCTTTTGTAGGGTTGAATGGACAAGTTCCCTTTTTTCTTTGTGGTATCCTGTCATCCTGAACTTGAATAGATCAAATCAAGTGCATGCACAGTGATGGTTAACACAGTCAGTGTAGGGTAGAATATTGAACAGAGCAATAATTAGCCCAGGTGGAAATGGTCCTCTGAGATTTTAAGGTGCTAGGTTTTACACTAATATCAGTTGTGCTGGGAAAATTCTTTGGAAACGTTCTGTCACCAACAGGAAAAAGGAATACGTATTGACCTTTTTCCTGTTGAAGATGACCTGGATTATAGGGCTGGGACGATAGATTGGTACAGTACCCCGGAATACCGAGTTATCAAATAATGAAATAGTAATGCCACTTACGAAATGGTATACCGTGGCATGCTAATGACTTAATAACAATGTCACAGAGTATGTTTGGAATATATGACTGTTACAGTGGAGTGAAATGACATTCAACCAGCGGAGAGTCGTACATATTAGTCATGACATCATCTTTTCCATTGCAGCACACTGCATTTGCAGGCGTTCAGTTCGGTGTGAGGTACCTACACTAACTAATATTATCATAATATATTGAAAATCCTAATACTCCTTATTATGATGCTCATACTCTGAAAATCACATAGCGTCCCAGCCACATGTTTATTAATGTGTCTCTGTTCAAACCTTTCCAGGCAAACAGGGTGATGTAACATGCATAAAAGTGTTTTCTAGGCTTTTTTCCTTAACTTACCTGGCCCTTCGCATGTTAATCACGGCACAGAGATAAGGAATGGGCTCTGCAAAGATGTGCTAAAGAGCCAACCTAATGGTGCCATTGCAGTCTTCTCTTTCTACAACAAAATGAATGTTATCACGTTGAATATGTCTCCAGCACTCTGATGGTCGATTCACTAATTTCTTTGTCATTTAAAGTAAAGAAAATATAGGTATTTCCAATTGCAATTATATCCAAGGCTGTCTTTATGGATTGATCATTGATTCAGATTTTCAAAGCTGCAGCTTTTCCCAATGGTTTATTTAAGACGCCTTTTAATATGCCTGTAGATTGAATTGGTCTTCAGAAAACCAACCTTGAAACACTATCATGGACTATGGCTGCAAGCTTAGTTTTTGTAAAGCCATTAGTGACTTTGTCTATTTTTCCTAGATTAATTTCCATTGTGCTCGGTCCAAAGGGACTCACACCTGTGGGGGGGTACCCAGGGAATCAGACCATGCCCAGCCCGCTCTGGGCCCCATGTCACAGACAGACCCATTCTTTATCCATACAGCAAAGCTCAGCAATTGGGAACATGccagccctttgaattgaatacCAGCGTAAAGTCATTCAGTCAGCACAAAACTCCCCAGTTCACAGGAAGGCAAGcaggctccctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctctctctttctctctctctctctctctctctctctctactttcccCTGCTCTGATCTCCAACAGCGGGCCCCTAGGGGCCTTCACACCCCGGAGGTGGAGGCCcccactccccctcctccctctctctctgagtctgggGTCCTGTAGAGACAGCAATTTTGAGCCAAATTGAGATTAAGACCTGGATACAATCGATCTGCCATATAAATAATCTGTGACCTTCACAGGCCTTCACAACCTTCCATCCTCATGGTTTCTCTCCGCTTTTACTTTGTTTCTTACCCGTTTTCTTGTTGAGGATGTTCAAGTGAATATATGGGGATGTTGTTCTGTTTCAACAAAGCTGAATGCAGTTTGTGTGGTGAGTTGATTGGATTCAGGAATGAGAACACATTTTAAATACAAAGTAGAATGGTTATTATTTTCAAACCTTTTGGACAAACTGTTGGAAATTGTGGACACGCCTTTGCAATGCATAGGTGTTGGATGATTCCAAAGAGTTCAGCACTGTTGATTGTGTCAGAAAGATCTGAGGTCCGAGGGGAACTTTGTATATGTTCTAATTGTAAAAcctgtacatttttatttatatagTTGTCTTTTTACACATATTACTCTGTAGTGAGCTCTGAATACATTGAAAATGCACTATATTTTTCTATCTCACTTGCAGATAATTATTGTCACCCAGAAGATTTCAGTTGTACAGACTTTCTCATTTAGGACCAAAGACAGGTTTTCCATCTAGAattgtattttgtttttattttctcttttaGTTTAATGTACAGTTATATGAATTgtcaatgtattatttatttttttctgtgATGAGAGTATTGAGTATTCATCGGTCAAGAGTATTTTCCCCAAACAGCAGAACTTTAAAATCATTACTTCTTAGACAATTTCCTGTTACataggacatttcttttttgctTTGTAACCTTTGTAATagactgtacatatatttttggaAATATAATACAATCTCTATAGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU774186 lncRNA downstream 119830 17302588 ~ 17302936 (-) True G679703
TU774164 lncRNA downstream 142823 17279713 ~ 17279943 (-) True G679681
TU774162 lncRNA downstream 143412 17279144 ~ 17279354 (-) True G679679
TU774106 lncRNA downstream 171519 17201254 ~ 17251247 (-) True G679623
TU774506 lncRNA upstream 10182 17509166 ~ 17509434 (-) True G680015
TU774539 lncRNA upstream 30706 17529690 ~ 17529939 (-) True G680046
TU774615 lncRNA upstream 85066 17584050 ~ 17584354 (-) True G680121
TU774617 lncRNA upstream 86226 17585210 ~ 17585501 (-) True G680123
TU775085 lncRNA upstream 199809 17698793 ~ 17699180 (-) True G680573
XM_036984900.1 mRNA downstream 341187 17056115 ~ 17081579 (-) False LOC110529509
XM_036984901.1 mRNA downstream 341187 17056115 ~ 17081579 (-) True LOC110529509
XM_021611752.2 mRNA downstream 341188 17056115 ~ 17081578 (-) False LOC110529509
XM_021611751.2 mRNA downstream 384830 16925897 ~ 17037936 (-) False LOC110529508
XM_036984899.1 mRNA downstream 529746 16830751 ~ 16893020 (-) True LOC110529504
XM_021611756.2 mRNA upstream 207625 17706609 ~ 17720195 (-) True LOC110529512
XM_021611757.2 mRNA upstream 221983 17720967 ~ 17723873 (-) True LOC110529513
XM_021611758.2 mRNA upstream 229306 17728290 ~ 17756041 (-) True LOC110529514
XM_021611761.2 mRNA upstream 257269 17756253 ~ 17835551 (-) True LOC110529517
XM_021611765.2 mRNA upstream 570168 18069152 ~ 18072594 (-) True LOC110529520
TU773944 other downstream 308238 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 792507 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 792507 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 989752 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 2906238 14511590 ~ 14516528 (-) True G676635
TU776244 other upstream 1292246 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 3979782 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 4421443 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 4421443 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 4660046 22159030 ~ 22161042 (-) False G685953

Expression Profile