RNA id: XM_021611758.2


Basic Information

Item Value
RNA id XM_021611758.2
length 3875
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC110529514
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 17728290 ~ 17756041 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaggcacttACCCATACTGCCCCTCATACAAAAGAGTATATGACGTTCTCTCCAAAACAGCAATTTCTCCCCTTACGCAGAATGGTAACTTTTTTTCACCACTTGAAAGATTCAACCCATCGATGAATGTCGCGGGGATTCTATTATGAAGTGACTGGTAGGAGTATCAAATCTGGACTACAATTTTACAACTGGTTTTGACAGCTGAGCTCTGTTGGAAATGCCACGGCGCCCTCTCTGATGTGAGGATGAGGTCCTACACCAGAGGGGCCCCCACAGCGTTCTTCATAAGTCTACTGTGGCCCCTGGTGTCCCCGGTGgtgggggtgggagaggagaCGGACCCCACTGGAGGGATACCCTTCATGGGAGGGAACTACGATGGACACCCCATGCTGTTTTTCGGCcagggtgaggtggaggagttgCAGGAGGCAGCGGCTGGGACTCACCGGGAGATGGCTGCAAGGATCCGCGAGGCGGGGGAGGCCATGCTGGAGCACCCTGAGGAATACCTGCCCCCCTGGAGCCCGGCCGAGTTCAGCGCCCGCTGGAACGAGGTGTATGGAAACAACCTGGGAGTGTTGTCTATGTTCTGTCTGCTCTACCCCCACAGGGCTGGGGCCCTTGACCTGGCCAAGGATTACATGGAGAGGATGGCAGCTCAGCCTAGTTGGTTGGTTAAAGATGCTCCTTGGGATGAGGTTCCTGTAGCCCACTCTCTGGTTGGCTTCGCTACAGCCTATGACTTCCTGTATGAGTACCTGAgcaaggtgcagcaggagcacTTCCTGCGGGTGATCGGTAATGCTACGCGCTTCATGTATGAGAAGTCCTACATCCGCGGCTGGGGCTTCCAGTACCTGCACAACCACCAGCCCACCAACTGTGTGGCTCTCCTCACTGGCAGCCTGGTCTACATGGCCCAGGgttATCTGCAGGAGGCCTACCTGTGGACTAAGCAGGTTCTGGCCATCATGGAGAAGTCTATGGTGCTCCTCCAGGATGTGACGGACGGCTCGCTGTATGAGGGCGTGGCCTACGGGACCTACACCACCCGCTCTCTATTCCAGTACATATTCCTGGTGCAGAGACACTTCTCCATCAGCCACTTCGACCACCCCTGGCTCCACAAACACTTTGCATTCATGTACAGGACCATCCTGCCAGGGTTCCAGAGGACTGTAGCCGTAGCAGATTCCAACTACAATTGGTTCTACGGGCCTGAGAGCCAGCTGGTGTTCCTGGACCGATACGTGATGAGGAACGGCAGCGGGAACTGGCTGGCTGAACTGATCCATCAGAACCGGGTGTTGGAGGGGCCAGGACAGGCCGGGAAGGGACAGAGATGGTGCACACTGCACACAGAGTTCATCTGGTATGATCCAAGCCTGACTCCCAGGGCTCCTGCAGACTTCGGTACATCCCAACTCCACTACTTTGAGGACTGGGGGGTCGTCACGTATGGAAGTGCTTTACCTGCAGACACCAACCACACCTTCCTCTCTTTCAAGTCGGGGAAGCTGGGTGGACGGGCCATATTTGACATTGTTCACAGGAACAAGTACAAAGACTGGATCAAAGGGTGGCGGAACTTTAATGCTGGCCATGAGCACCCTGACCAGAACAGCTTTACGTTCGCCCCTAACGGTGTTCCTTTTATCACGGAGGCTCTGTACGGGCCCAAGTATACCTTCCTCAACAATGCAGTGCTGTTCTCCCCAGCTGTCTCAGGGAGCTGCTTCAAGCCATGGGAAGGTCAGGTCACCGAGGCCTGTGACTCCAAGTGGCTGAAGTACAAGGTGGGGCTGGCGGCGAACGCCCAGGGCAGGGTGGAGGCGGCTCTGGAGAGGCAGGGGATGGTGTTCATCCGTGGGGAGGGCCAGTCGGCCTACAACCCTGACCTGAACATCAGGAGCTTCCAGAGGAACCTGCTGCTCCTGCACCCCCAGCTGCTGGTCCTAGTGGATCATGTCCATCTGGAGACAGACAGCCCAACCAGGGCCATGAGTGCCTTCTTCCACAACACGGACCTGTCCTTTCAGGAAGCCAAAATAGATGGTGTGCATGGAGCCTTTGTCAGACACGGTGAAGACCCGTATAAAATGTTCTGGATGGATGACACGGGCTTCAGTGAGAAAGGGGTCTTGGGGTACTGGAACTATCCACGTGGTTACCCCTATAATGGCTCTAACTATGTGAATGTGACAATGCCACTGAGGTATCCACACACCAGGGTGGCCTATATCTTCTTTGGGCCGGGGGTGGACGTGCAGAGCTTTAGCCTGCGTGCTGATGCTAATAGGGTGGACATTTACCTGGCCACCAACGAGCACACCTACACCATCTACCTTCTGACAGGAGAGGTGACCAACAAGCCTCTGTTCGCCATGGTACTGGTGGACCAGAAGAAGATTGTGTTTGAGAAAGCAGCAGGAGTGCTGAACGACACgccagaggaggtggaggagtatGTCAACGTAGTAGAGGACAACCTCCAGCATGCCAAGCCTGTTTTCCAGCAGCTGGAGAGACACATTCTGGGCAGGGTACTCAACACGGCCAGCTTCCGCAAGGCAGCTGAGCGCCTCCTACAGTTCTCAGACAAGAAGAAGACAGAGGAGGCTATCGAGAAAATGTTTGCTCTGACTAAGAAACAGGGCAAAGGAAAGGGGGCCAAGAAAGCCTTGGGGAACCTTGGGAACGAGCTCTCAGAGAGCCTGCCTGACATATTTGCACAGATCGAGGTGAGTGAGAAGAAACAGAGATCGAAGAGCACAAAGCGGATTATTGAGGAGAGCTCAGAGGAGGATGGAGACTCCAGGGCGTTTATGGATTATGGAGACTCAAATAAAGGCAGGAAGGGTGGCTTTGTTAAGGGTCGCAAGTTCAAGGAGGTCCACATGTCGGCAACAGCCAAGAGTGACAGTCTGTCAAACGTAGCCTCTTATATCAGACTATTCCTAATCTTAAACATAGCCACCTTCTTCCTGCTACTGGCTGTGTTATTGACACGCTTCCAGAGAGGCAGAAGTCTACACACCCAAAGGTGTTTCTATGGCATTCTCCTCATCGACAGCTTCATTTTACTCTGCCTCTACTCTTCCTGCTCTCGCACACAGTGTTGACATCATTACTGTGCAACGACGGGGAATGTCAATGTACAGACAGACCTATTGAACTATTGTAGTTCGCCATGGGTGATTAAAATGCACCATACACCTCAGTCTGAGCCAAATCTACCTGATGGGTGTCCAGGAAATCATTAATTCCAAATAGGAATTGATAGACTTGACGATATTAAGCCAGACCACCTCTGAGATCCTAAGCTTCTGTGGAGCTTGAGAATGGAGTCTGTATAAACTTTGTCATGTACAGTTTTTAGATTAGACCCCCTGACTCATATCAAAGATCTCCAAGGCTAGCCACTAAAATGCAgatgtctctgcctctctctgtgtacGTTTTGACATGCAGTCTGTCATAAATAATATAgaaaggtcgggtgattgtggaggccaggtcatctgatgcagcactccatcactctccttggtcaaatagcccttacacagcctggaggtgtgttttgggtcaatgtcctgttgaaaaacaactgatagtcccactaaacgcaaaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatcacagacagtttcACCAGCAATGCACCCTCACACTATcatacttcctcctccatgcttcacggtgggaaccacacatgcagagatcatccgttcacctactgtactctgtgtctcacaaagacactgccgttggaaccaaaaatctcacatttggactc

Function

GO: NA

KEGG:

id description
K01794 DSE; chondroitin-glucuronate 5-epimerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU775095 lncRNA downstream 10739 17712733 ~ 17717551 (-) True G680582
TU775094 lncRNA downstream 12576 17710544 ~ 17715714 (-) True G680581
TU775084 lncRNA downstream 25045 17703015 ~ 17703245 (-) True G680572
TU775083 lncRNA downstream 26035 17701814 ~ 17702255 (-) True G680571
TU775085 lncRNA downstream 29110 17698793 ~ 17699180 (-) True G680573
TU775172 lncRNA upstream 79799 17835840 ~ 17836420 (-) True G680654
TU775382 lncRNA upstream 390307 18146348 ~ 18146565 (-) True G680859
TU775407 lncRNA upstream 411208 18167249 ~ 18167464 (-) True G680882
TU775409 lncRNA upstream 412708 18168749 ~ 18169039 (-) True G680884
TU775417 lncRNA upstream 422462 18178503 ~ 18178731 (-) True G680892
XM_021611757.2 mRNA downstream 4417 17720967 ~ 17723873 (-) True LOC110529513
XM_021611756.2 mRNA downstream 8095 17706609 ~ 17720195 (-) True LOC110529512
XM_036984908.1 mRNA downstream 229306 17422766 ~ 17498984 (-) False LOC110529510
XM_021611761.2 mRNA upstream 212 17756253 ~ 17835551 (-) True LOC110529517
XM_021611765.2 mRNA upstream 313111 18069152 ~ 18072594 (-) True LOC110529520
XM_021611774.2 mRNA upstream 826122 18582163 ~ 18587994 (-) False LOC110529526
XM_021611776.2 mRNA upstream 826122 18582163 ~ 18587994 (-) False LOC110529526
XM_021611775.2 mRNA upstream 826863 18582904 ~ 18587994 (-) True LOC110529526
TU773944 other downstream 613762 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 1098031 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 1098031 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 1295276 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 3211762 14511590 ~ 14516528 (-) True G676635
TU776244 other upstream 1035189 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 3722725 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 4164386 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 4164386 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 4402989 22159030 ~ 22161042 (-) False G685953

Expression Profile