RNA id: XM_021611761.2


Basic Information

Item Value
RNA id XM_021611761.2
length 2912
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110529517
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 17756253 ~ 17835551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGAAACGCAacgctgcaaggcaaacgcagcgttccattggaaattaaAGCACTTCTGGTGTCCAAAACGCAAAAATACAGTCGGTGTGTTCGAAGCGTACTCATCGGCTTTCGCCTGCAGTCGGTTGCTTCAGCCTAACCACGCAAACGAGCCCATTGATTGACAGTAGTGTGCAGGAGTGCACAGGGCAACATCCTTGTTTTCCAGCATTTTCGTTAAAATGACCGAATATTTTTCCCTTtcagattgtgatgtcattgGTTTTGATTTGGACCACACACTCTGTCGGTACCATTTGAAAGAGACCTCCAGGCTGATCTATGAGAGCTTTACCAGGTATCTGGTGGAGCATAAAGACTATGACAAGGACCTTCTCACACTGACCCCTGCTACCTGGGATTTCTGTTTCAAGGGCTTAGTGGTAGACCTTGAGGATGGAAACTTGGTTAAATTGGCGGAAGATGGAACTGTCTTACGAGCAACCCATGGGACCAATAACCTCAGAACAGAAGAGATCATTAAACATTACGGTCCAAAAAGGGAATGGAACCACTTTAATAGCCTCAATACCACATTTACGAGATCTACAAAGTACTATTTTTATGACAACTATTTCGATCTACCTGGGGCTCTTCTCTGTGGAAGAGTTGTGGATATGTTGCGCAAGCGTGGGAGTGAGGTGAATTCAGACTTTTGGAAAGACATGGTCGCTGCCATCGACCACAATTACAACACATCAGCATTCAAAGAGGATGCTGGGTGGTACTTTCCCAGTGTGAAGAGGGACCCTGGTCGTTACCTGCAGCCCTGCTCTGAGTCTGTCAAGACCTGGCTGAGGAGCATGAAGAGTGCCGGGAAGGTCCTCCTGCTCATCACCAGCTCCCACAGCGACTACTGCAGGCTCATCTGTGACCAAATCCTGGGGAAGGACTGGGAGGAGCTGTttgacatcatcatcaccaacgcCTTGAAGCCTGGGTTCTTCTCACTGGTGCCCCAACAGAGGCCCTTCAGGACCCTGGTGAATGATGTGGAGGAGAGCGAAGGGCTGCCATCCCTGGACAAGCCTGGCTGGTACTCTCAAGGCAACTGGCCCCACCTCCACCAGCTGCTCAAGACCATGACTGGCAATCCTGAGCCCAAGGTGGTGTACTTTGGGGATAGCATGCGGTCGGACATGTTCCCTGCTAGCATGTTTGGGAAGTGGGAGACTGTGATGATCGTGgaggaaatggagggagagggcgTCCCGAGGAGCGACGCAGCAGAGACCAACGAGGCCCAAGTGGAGCCTCAGGAGAAGAAGGGAAAGTTTGAGGACCAGGGCATGAAGGCGCCCTCTGCTCCATCCGAACAGTGGGGATCCTACTTTGTGGACACACACAAGACTCctggaggggatgaggagagcCAGAAACTCACCTGGTGCTGCCATAGCATCCACAAATACAGCACAATGGCCATCCCCAGTGTGGAGTCTATTGCAGATCTCCCTCTGGACTACAAGTTCCCCAGGTTCTCTCCCAACAAACCCTGCACCACCGGCTACTACCCCAGACCCCCAGATTCCCTGCTGAAGAAATGCCAGAGTCAGTCGTCTTAAAGAGTCCTTCTTCCCAGAGTCACCCCCCCTCAACCTCCTCAGCCTAATGGGGAGGAATGTGCCTCCATCTCACCTGTAGTTCCACACCTGAACCATGCCAATCATCCCTAGAGCACAGGAAATCACGCTCACATTGATAGAAACCATGGGAATGTAAAAGCACAGTATCGCTCTGTAAGTATCTTGGCTACATTTGAACGTTGTTCTGTACGTGGATTATTGTACGTGTGTGTGGAAAATGTGACTTGCCAATTGTGTAGGTATCTGTCAGCATACAGTGCTGATTTAAAGCACATTCATATTGTTTTATGTGAAGACCACTATTTTTTTTATGTAGATATATAGGTATTGGTGTTCCAGTTGAACCCCCTATACTGTAAGTGCATCATTCAATGTAAGTTAATAACTCTTTAGAGTAGTAACAAACCTTTCAAACCCCACAAATAATGTCCtacattttgtttttgtgtgtcctTACCTCAAATCTGATCTGAAATGCAACGTTGAACAGTCCCAGCAGTGTTTGTCTCCCGAGAGAAATTCAGAATAATCCATTATGCCTGGTATTAGTGTGTGTATAATACATAATAAACAGACATTTTGGTTTTGTTTCGATGTATGCATTTGAATAACAGTAAATTTAGATGCCCTTAAAAGGTAAAGCATTTCCCCTGTATTGATTTTGTGTAAGGTGTGTAAGAGCATTGTTCTTGAAGAAATGGCACAATCTGTCCTTGGTGTTACCTTTCTGTGGGGAAAAATGTAATAATAAAGGAAAACTGTAATACTGGGTGGTTAATACTATGCTCTGTGTACTCTATGTATTATCTTGGTGCAGCAGTAAACTATAGTGCTGTTGGGGTGACTGTAAAAGTGTGGAATACTTAGGCTTCATAATGCAGTACCAATTTGAATATATGCTTTAACCAACTCCTGAATGGTTACATGTGTTGGTGGACTGCATATAGACTAGTTGTATTATATTGATAAGAAACAAAGTCTGAATATGCTTTTAAGAGTATTTTGATAGTAAGTACTGTATTAGTTgataagagaggacaggagacttTAATTGGGAAGCCAAAGTGGGTTATTATTTATGTTATAAATGTGTGTGTTGGCGTTAAACACAATGCAGCTTTAGTGATCCATTTACTTTTTTCATGTGATTTGCAAACTTTTATAAGCCCATTTGCCTTATGTTCAATTCATTAGTGCTCTTGTGTTCTAGAGAAGATACAGGGAAAGTGTTTAATGTACTGtctattaaataaaaaaaaatgttctaCAATTTTGTTACACTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU775106 lncRNA downstream 10725 17745325 ~ 17745528 (-) True G680592
TU775100 lncRNA downstream 24458 17731583 ~ 17731795 (-) True G680586
TU775095 lncRNA downstream 38702 17712733 ~ 17717551 (-) True G680582
TU775094 lncRNA downstream 40539 17710544 ~ 17715714 (-) True G680581
TU775084 lncRNA downstream 53008 17703015 ~ 17703245 (-) True G680572
TU775172 lncRNA upstream 289 17835840 ~ 17836420 (-) True G680654
TU775382 lncRNA upstream 310797 18146348 ~ 18146565 (-) True G680859
TU775407 lncRNA upstream 331698 18167249 ~ 18167464 (-) True G680882
TU775409 lncRNA upstream 333198 18168749 ~ 18169039 (-) True G680884
TU775417 lncRNA upstream 342952 18178503 ~ 18178731 (-) True G680892
XM_021611758.2 mRNA downstream 212 17728290 ~ 17756041 (-) True LOC110529514
XM_021611757.2 mRNA downstream 32380 17720967 ~ 17723873 (-) True LOC110529513
XM_021611756.2 mRNA downstream 36058 17706609 ~ 17720195 (-) True LOC110529512
XM_036984909.1 mRNA downstream 257269 17422766 ~ 17498984 (-) False LOC110529510
XM_021611765.2 mRNA upstream 233601 18069152 ~ 18072594 (-) True LOC110529520
XM_021611774.2 mRNA upstream 746612 18582163 ~ 18587994 (-) False LOC110529526
XM_021611776.2 mRNA upstream 746612 18582163 ~ 18587994 (-) False LOC110529526
XM_021611775.2 mRNA upstream 747353 18582904 ~ 18587994 (-) True LOC110529526
XM_036984921.1 mRNA upstream 753267 18588818 ~ 18674196 (-) False LOC110529198
TU773944 other downstream 641725 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 1125994 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 1125994 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 1323239 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 3239725 14511590 ~ 14516528 (-) True G676635
TU776244 other upstream 955679 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 3643215 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 4084876 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 4084876 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 4323479 22159030 ~ 22161042 (-) False G685953

Expression Profile