RNA id: XM_021611766.2


Basic Information

Item Value
RNA id XM_021611766.2
length 6039
RNA type mRNA
GC content 0.53
exon number 40
gene id LOC110529521
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18274367 ~ 18311064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGGAGGCATAGGCGGGAgttgaaaggaaaggagaggaggaagtacACACTATTTGTTTTATAGGACTTGCGGCTGGACTGAGCTGGCGCTTGCACCGCAAGGTCGGACCAGTGGAAAAGTTAACCAACGGGTGctgcagaaagagggagagagagagctgcctgTGTCGCAGAAAGACTTCACTACAGGCAGGACaatgagacagagagcgagagggagcagCGCTCCACTGGacttacacacagacatgtctgCTACTAAAGCTCTGCCCTGCCTCTGCCTTCTACTCTCCATCGTCCTCTCAGGGATCGTCTGCCCAGCGACTTCCATTGGTTTACATTGGGAACAGCAGTCTGTGATGAAAGTGTGTGCAAAACTATATTTTCTCAGTAACCAGAAAAAATGCCTACCATGTAACTGCAAAGGCCATTCAGAAACATGTGAAGATATCACAGGTGTTTGTACATCATGTCAGGACCACACCACTGGGAATTTCTGTGAAATATGTGAGGATGGATACATGCCTGACGTCGCCAACCACGGACGTCACTCCTGCCAGCCGTGCGCCTGTCCCCTGTCCAGCCCCTCCAACAACTTTGCAGAGCACTGTGACAGAAGCAGTAACATCCTACGATGCAACTGCCAAGAGGGCTATGCTGGACATTACTGTGAGAGATGTGCTCCAGGTTTCTATGGCAACCCCATGGTGATCGGTGACTCCTGTAAGAGTTGTGACTGTAATGGTAACTCGGACCCCAACCACATCTTCAATGAGTGCCACAACGTGACCGGCTTCTGTCAGAATTGCTGGGGGGACACGGCCGGAGCCAACTGTGAACGGTGTGCCCCAGGTTTCTACGGCGACGCCATCAGTGCCAAGAACTGCAGAGtgtgtgagtGTAGTAAGTGTGGGACAGCTTCGTGtgatgacaggacagggacatGTCACTGTAAGCCTGGTGTCACCGGCCAACTCTGTGACCAATGTGAGAAGGGCCACACAGGTTTCAATAACTGCCAGGGCTGCCATAGTTGTGACTGCGGACCTGCCGGTCTCCGGCCCACCTGTCATCCTCTGACCCACAGCTGCCAGTGCAAACCAGGGGCCGGAGGCCGATACTGCGAGCGTTGCCTCCCAGACTACTGGAACTACGGCCCCTCAGGGTGTCAGAAATGTGACTGTGCTAGCAGCCACTGTGATATGCACACTGGGGAGTGCCTCCCTGAATCCACCACGGTCAACCTCTGCAACATCAGTTGTGATGAGTGTATCTGGCACCTGATTGGTGACCTGAGGGCGTCCAATAAGACCCTGGACCAGGTGAAGGTCAGTGTGTTGAACATCTCCACTGGGGCTGCAGCCAACGACAGGCTCAAGTACTACAACTACACCGCCCAACGTCTGAAGACACAGTTTGTGAACTGGAGGAATAAGTCAGCTCTGATGAGGACCCAGACTGGGCAGCTGGAGGAGGCCAGCGCTGTTCTACTCTTAGACATGAACCATCTTGCAGAGACGGAGAGTGTAGTGAAGTCCTTGAGGGACAGAGTGGATGACGACACACTACAGAGCTTCACTCTGGCTGATGAGCTGACAACTAACCTTACCGCCCTCAAAGTGCTAATTAAAGAGATGATCAGTGACTGGAAGCTGTACAGTGTCCATCAGGATCTGGACCCAGAGATCATCATTCAAAAGACAGCTGTTGCCGAGGGCATGGTGGCCTGGATGAAGAAACTGGACCTTTCCCCACAAGAGCTTATCGCCACCGATGAGTCAACCGAGGCCCACGACCTCCTTAGACGCATGCGTCAGCTGGAGAAGAAGCTGATCAGTACAGACAGCCGCGTGGCCCCGGTACGGGAGGTGCTCTCCCGCTTCACCAACAAGCTCTCTGAGGCCCAGGAGATCCTCCAGAAGGCTGCCAACACTGTCCAGGAGACGGAAGACATGAACAAAGCCAACACCGTCAAATTCCAGAAGAGTGAGgcCAAGCAGCAGCAACTGATGGAGAACTACGAAGCTGTGAATGACACCTTGCAGATGGCTAAAGACCTTATCATGGACACTGAAAATACTGTGGCCGAGATGCATCTCCTGGTGCAGAACGTGACTGAATACCACGCTGCGATCGACGGCGCCAGCAAGGGGCTGCAGGAGAAGACTGAGGTGCTGCCCCTGACAGACAGAGACCTGGTCCTGAGAGCCCGGGACCACGCAGAGGACCTCCAGGGTCAAGCGGAGGAGCTGGAGTATAATCTGAAACGCAGTGATGCCAACGGCTTCGTGCAGAAGGTTCTGGTTACAGCCAATGTGTATAACAACATAGTCCAGTACATCGAAGAGGCCAACATCACTGGACTGACAACAATGGATTTAGCAACAAGAGCTGAGGATGCCAGCGATGGGATCAACACCCAGCTGGGGTTTCTGAAGACCCAGAGTGAGAATGTCTTCAAGGAATCTGTTTCATTGCGCTCTGAGCATTTCGAGGTTGAAGCTGAGGTTCTGGACAAGATGAAATACATTGAGGAGACCAAGGAGACCATGGGGGATTACACCAAAAAACTAGCGGTAGTACTGAAAGATATCAAGGGAATTGAGCCAGGCAGAACCACCAAGCGTCTGGAGCTCACCGAGGAGGTGGCTGAAGGCACCCTGAACCGGTCAGTGGAGGTCCTGCAGACCATCACCCCCATCCACGAGAAGGTGGAGGAGTGGGCCACCAACATGAAGAACCAAGATTACTCTGCTGCAGCCTTTGACCACGCTGTAGTCTCTGCTGGGGAAGCAGTGGAGAACCTGTCTGAGCTGGTCCCTGAACTGCTGGATAAGCTGCGTGTGGTGGAGGAGAAGAACCAAGTGAACAATGTGACCACTAACATCATGAGGATCAGAGAGCTCATTGCCCAGGCCAGGAGTGTGGCCAAGAAGGTCCAAGTGTCCATGAAGTTCAACGGTCAGTCATCAGTTCAGGTGCAGCCCCACACCAACCTTGAGGACCTGAAGACAGTGACCACCATCAGCCTGTTCATCAGGGTGGACCCAGATAAGGACCCTATCGAGGACCGCTTCATCTTCTATCTGGGAGACAGAAACGGTAGGAAGGACTACATGGGTCTGGCAATCAAGAATGACAACCTGGTGTACGTCTACAACCTGGGAGAGGAAGATGTCGAGATCCCACTTGGTTCAAAGCCTGTCAGCCAATGGCCTCCAGTCTTCAACCTCATCAAAGTGGAGAGGTTGGGCAGACATGGCAAAGTGTTCTTGACCGTACCCAGTCAGACATCCACAGACGAGCAGAAATTCATCCAGAAGGGAGAGGCCTTTGGCACCGACTCCCTGTTCGACCTGGATCCTGAAGACACTGTCTTCTTTGTGGGTGGCGTTCCCGCTGATGTCAGGCTTCCACCTGCACTCAGCCTAGCTCCTTTTGTGGGCTGCATCGAGTTGGCCTCTTTGAATAACGATGTCATCAGTATGTACAATTTCAAACAGACCCACAAGATGGATGTAGTTGCTTCAACACCTTGTCCCAGGTATAAGCTGGCATTCTCACAAAGTCGTATCGCCAGCTACCTGTTTGACGGAACTGGATATGCCCTCATCAACAACATGGAGAGGAGGGGTAAATTTGGCATCGTCACCCGGTTTGACATTGCTGTTCGGACAGTGGCAAACAACGGCATCCTGTTACTCATGGTCAATGGGGACAACTTCTTCATGTTGGAGTTGAAGAATGGCTTCCTACGTCTCATGTATGACTTTGGCTTCAGTGGAGGCCCGATCGTCATGGAGAGTAACTCACCCAAACTACAAATCAACGACGCAAGATACCATGAGGTGTCAGTGATCTACCATTACTCCAAGAAGTTCATTCTATTGGTGGACAAGAGTCacgtgaagtccatggagaacgaGAAAAAAACTCTGCCCTTCTCTGATATCTACATAGGAGGAGCCCCCTCGCACATTCTCCTCTCCAGGCCTGATCTGTCCTCCCTGGTTGGGCTGAAGGGCTGTGTGAAGGGCTTCCAGTTCCAGAAGAAAGACTTCAACCTCCTGGAAGAACCTGGCACTATTGGCATCAGCAGCGGTTGTCCTGAGGAGTACtttATGTCCCGTAAAGCCTATTTCACTGGAGAGGGCTACCTAGGGTCTGGGGCAAAGATATCTCCTTTCGACTCCTTCGAGGGAGGCCTTAACTTCAGGACACTGCAGCCTACTGGTCTCCTGTTCTACCACAGCGAAGGGTCTGATGAGTTTACCATCACCCTTGAGAATGGAGCAGTGGTATTGAACTCCAGAGGCACCAGAGTCAAATCACAGAAGAAGCAGTACAATGATGGAATTACCCATTTCCTGGTAGCTTCAGTGAATAATAACAAGTATGAGTTGGTAGTGGATGACAAAGACAAGCATGAGAAGAAACGTCCGACTGCTGCCCCGTCAGCATCCACAGTGAGGAACTTCTACTTCGGGGGCTCTCCCAGCAGCAGCATCAAGAACTTCACTGGCTGCATCAGCTATGCCTACATCAGCAGaCAAGACAGAGACATTGAGCCAGAGGACTTTCAGAAGTACACTGAGAATGTCCAGACCTCTCTGCAGGACTGCCCTGTGAAGCGACCACCCGCTGCCCTGTTCTTGAAGCAAAGTAAAAACTCTGCCAAACCCAAGCAGGGCCATACAAGGAAGGTGGGCAGAGATAAGTCAAACCTCCCAAAAGGCCTGTTGGGACTGAATAGTGATGAACAGAAgccaggagagacagaggacacgcCCTGCTACCTGTCCCCGAGGCCCCGTGCCACCCGCCATGCCCATCACTATGGGGGCACTGCCAACAGCAGGCAGGAGTTCACAGACATCCCAGGGTCCCTCTCTAAGAGGTCTCACTTCTCCCTGTCCCTGAAGACCCAGTCCTCCTTTGGCCTAATCTTTTATACATCAGATGAGGCGGAGGACAACTTCATGGCTCTCTTCCTGGCCCATGGCAAGCTGGTGTACACATTCAACCTGGGTCAGCAGAGGGTCAAGATCAAGAGCCTGGAGAAGTACAATGATGGAGCATGGCACAATGTTATTTTTATCCGTGATGGGAATCTAGGCCGATTAGTCATTGATGGGCTGACAGTGCTGGAGGACAGAGCTCAGGGCTCCAACGTTTCCTGGCACGTCAGCAGCCAACTCTACTTGGGGGGGGTGCCCCCAGGGAGGGCCCAGAGGAACATACAGAGAAACTCTGCATACAGCTTCACTGGCTGTGTGAAGAACCTCCAGCTGAATGGCCAATGGATGTCCTCCATGTTCCAGACCTTTGGGGTGACGCCGTGTTTCGAGGGACTCTCCGAGCCGGGGACATACTTCTCCGAAGAGGGTGGATATGTTGTTTTGGATGACACGTTCAACCTGGGGCTGAAGTTTGAGCTGGTGGTAGAGGTGCGCCCCCGTGTGGCATCAGGGGTGCTACTGCATGTGTACACAGCAGCCGGGGAGTACCTCACCATGTACATCCATCAAGGAGCAGTGATTGTGCTGGTGAACAACGGAGTTCGTGAGTTCTTCACTCAGGTCACTCCTAGACTAGGCCTGTGTGatgggagctggcacaggatcaCATTGATTCGAGATGCCAATGTTGTCCAGCTGGATGTGGACTCAGAGGTCAATCACGTGGTGGGACCACTCAACCCCAGCACCAAGAGTGCCAGGACCCCTGTGTTCATTGGTGGAGCTCCAGAATCTCTTCTTCCAGAGGGCATTGCGACTAGGAGGGACTACACAGGCTGTATGAGAAAGCTGACTGTGAATGAGAGCCAAGTGAGCTTCAGTAAAGCTGCCCTGGTCAGCGGGGCCGTCAGTGTGGGCTCCTGTCCAGCTGCCTAAAGGGCCTGTCATAACCAATACAGGCCAGCTCTCCAACAACAAGACTGACCAAATTCTGCTTCATAACTATCTATCCTTGTTCACCAACGCAACATTTGTTGTTCTTTGGTAAGAGAATGACCCAGAAATGTAAACCACCCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU775445 lncRNA upstream 74548 18199531 ~ 18199819 (+) True G680920
TU775444 lncRNA upstream 75395 18198381 ~ 18198972 (+) True G680919
TU775424 lncRNA upstream 90296 18183848 ~ 18184071 (+) True G680899
TU775395 lncRNA upstream 113221 18160945 ~ 18161146 (+) True G680871
TU775393 lncRNA upstream 113482 18160261 ~ 18160885 (+) True G680869
TU775487 lncRNA downstream 543 18309150 ~ 18309952 (+) True G680959
TU775484 lncRNA downstream 9556 18318163 ~ 18318943 (+) True G680956
TU775485 lncRNA downstream 10440 18319047 ~ 18319349 (+) True G680957
TU775624 lncRNA downstream 25231 18333838 ~ 18334043 (+) True LOC110529194
TU775629 lncRNA downstream 29838 18338445 ~ 18347351 (+) True G681084
XR_005053017.1 mRNA upstream 109511 18162705 ~ 18164856 (+) True LOC110531073
XM_021611763.2 mRNA upstream 218639 17959151 ~ 18055728 (+) False LOC110529519
XM_021611762.2 mRNA upstream 416553 17845718 ~ 17857814 (+) True LOC110529518
XM_021611760.2 mRNA upstream 441157 17825436 ~ 17833210 (+) True LOC110529515
XM_021611755.2 mRNA upstream 572892 17682064 ~ 17701475 (+) False LOC110529511
XM_036986828.1 mRNA downstream 2300 18310907 ~ 18317600 (+) True LOC118965599
LOC110529194 mRNA downstream 22940 18331547 ~ 18342108 (+) False LOC110529194
XR_005052821.1 mRNA downstream 54181 18362788 ~ 18389361 (+) False LOC110529523
XR_005052822.1 mRNA downstream 54181 18362788 ~ 18389361 (+) False LOC110529523
XM_021611768.2 mRNA downstream 67186 18375793 ~ 18449484 (+) False LOC110529523
TU773135 other upstream 1379532 16893159 ~ 16894835 (+) True LOC110529505
TU772807 other upstream 1886031 16387450 ~ 16388336 (+) True LOC110529493
TU772802 other upstream 1886131 16387450 ~ 16388236 (+) False LOC110529493
TU772798 other upstream 1886290 16387450 ~ 16388077 (+) False LOC110529493
TU772775 other upstream 1888422 16384802 ~ 16385945 (+) True G678417
TU776513 other downstream 855329 19163936 ~ 19165640 (+) True G681909
TU777286 other downstream 1420226 19728833 ~ 19729671 (+) True G682611
TU778522 other downstream 2254268 20562875 ~ 20563434 (+) True G683669
TU778611 other downstream 2318343 20626950 ~ 20632899 (+) True G683757
TU778731 other downstream 2398451 20707058 ~ 20707371 (+) True G683845

Expression Profile