RNA id: XM_036984918.1


Basic Information

Item Value
RNA id XM_036984918.1
length 3461
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110529523
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18362788 ~ 18449484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGTTTCATTGTGGCCCTGCAAAGACAACGCCATCATACCCCATACTCAGCAGCTATAGCGAGCGGGGCAGCTCGAATATCACACAGGATTTATGTAGGCTATAAGGTTATTATTGTCACAAAAACATCAAGCGTCTCATCTTCAACTGCAATGGAATACATTCGTCCGGTTAATTAGACGCCTTCGAATCGGGCCTCTGTTTTCGCAGTACACAAAGCAATGTGGAGCAAATAAAGATCCTGATACACTGAAACCAGAGaATATAGATAATGGGCTGTGTACAATGCAAGGATAAAGAAGCAACGAAACTCACAGACGACCGAGACACCAGCATCTCCCAGAGTGCCACAGGCTTCCGCTATGGCGCCGATCCCACGCCGCAGCACCAGCACTATCCCAGCTTCGGGGTCACCGCCATCCCCAACTTCAACAACTTCCAGGCGCCTGTCGGCCAGGGGATGACCGTCTTCGGAGGGGTCAACACCTCCTCCCACACCGGGACCCTACGCACCCGTGGCGGAACAGGAGTTACCCTCTTTGTGGCACTTTATGACTATGAGGCGCGGACAGAGGACGACCTCAGCTTCAGGAAAGGGGAGAGGTTTCAGATTATCAACAGCACtgaagGGGACTGGTGGGATGCTCGTTCCCTCACCACCGGTGGAAATGGTTACATCCCCAGTAATTACGTGGCTCCAGTGGACTCCATCCAGGCTGAGGACTGGTACTTTGGGAAACTAGGCCGGAAGGATGCAGAGAGGCAGCTGCTGTTCACTGGTAACCCCCGTGGCACCTATCTCATCAGAGAGAGCGAAACTACAAAAGGTGCCTTCTCCCTGTCCATACGAGACTGGGACGACGTGAAGGGGGACCACGTGAAGCATTATAAGATCCGTAAGCTGGACAGCGGTGGTTACTACATCACCACCAGGGCTCAGTTTGAGACCCTACAGCAGCTGGTACAGCACTACTCAGAGAGTGCGGATGGTTTGTGCTTTAATTTAaccggtgtgtgtgtgaactacaCCCCTGATACTGTGGGCCTGACTCACGATTCCTGGGAAATCGCCAGAGACTCACTTGAGTTCGAAGTAAAGCTGGGGGCGGGATGTTTTGCTGAGGTGTGGTGTGGAACGTGGAACGGCACCACTAAGGTGGCGGTGAAGACGCTGAAGCCGGGCACCATGTCTCCTGAGTCCTTCCTGGAAGAAGCCCAGATCATGAAGAAGCTCCGGCATGACAAGCTGGTGCAGCTCTACGCTGTGGTGTCTGAGGAACCCATCTACATCGTCACTGAGTACATGGGCAAAGGAAGCCTCCTTGATTTCTTGAAGGATGGGGAGGGACGAGGACTGAAGCTGCCCAATCTGGTTGACATGGCAGCCCAGGTGGCAGCAGGCATGGCGTACATCGAGAGGATGAACTACATTCACAGAGATCTGCGCTCGGCTAACATCCTGGTCGGGGACAACCTGGTGTGTAAGATCGCCGACTTCGGATTGGCCAGGCTGATTGAGGACAATGAGTACACAGCACGGCAAgGTGCTAAATTCCCTATTAAGTGGACAGCCCCGGAGGCTGCGCTGTTTGGGAAGTTCACCATCAAGTCAGACGTGTGGTCGTTCGGCATCCTGCTCACTGAGCTGGTCACCAAGGGACGGGTACCCTACCCAGGGATGAACAACCGGGAGGTGCTGGAGCAGGTGGAGCGAGGCTACAGGATGCCCTGTCCCCAGGACTGCCCCATCTCCCTCCACGAGCTCATGGTGCAGTGCTGGAAGAAGGACGCCGAGGAGAGGCCCACCTTCGAGTACCTGCAGGCCTTCCTGGAGGACTACTTCACGGCCACGGAGCCGCAGTACCAGCCAGGCGACAACCTCTAAACGCTGGGCTGGGAACAGGACTGGACTGAACCGTAGCTCTCTGGAGCCccaccagggaccagggaccagggacctgTACATCTTCCTCAACTTAACAGAGCATCTTGTCTCAACTCTCCTCACTCTCCGTGGCTGACCCTGTGACTCAACAGACTGGATACCAGAGGTTTTGTGTGTGAGGGAAAGTGGGGTTTGATCTAGCTGGGGCTGGGTTAAATAGGTTGGGCGTGTATGGGttatgaaggagggagggagaggggaagggagtgaGATTTGGGTGTGGTTGGGTTTGTGATGATGCAATGAAATGCCTGTATTCAATGTAAATATGAACAGCTTGTTTGCTTAACTTTTGGGCTTTCTtttgttggtttgtttgtttgacaTATTTTCTCCAGCACAataatgatgatgacgatgataatAAAGAAATTATGACCATTTCAAAAGTGCACCATGAGACCAATATCTCAAGTTATCTGGTCTCTTCCAATCCAGATTCTCTTCCAATCCAGATTCTCTTCCAATCCAGATTCTACAGGacattcctttctttgcaaagtCATCTGTTTTACCGACTAGGCTAGCATGACAAAGTAGTCCGTTTTTCTAGCAATGCTTCTTATGAAGTAAGTTTGATATGATTCATCAATGTGAGATAGCTTTGTCCTCCTCATAATAATAGATGTTGGGCTAATGCTGTAACAAAGTTATTTTACAAATAATGTATGTTACATTTTGTAATTGCAGCCAAACGTGTAAGAATTATACTTTTGAACATATCTGTTCTCGCTTACCAGATTTTAAGAAAAGTAAATAACGGGGAAAAATCTGTCTTTCCAGGTATTATTTAGTGTGTACTGGAAGGGAATACCGTTTATTTAAGAAGAGAAAGATGTATGTCGACATTTAATGGTCATATTTGAACTTGTATGCAGAGTTCCATTTCAACAGCCATTCCAAGGCATCCATCTCATGGACCTTGTTTCCTCCATGATGTGTAGCCATGTACTGGGAAGTCTTAGTGGGTAacgtctcttcctccctctgtgaACAGTGACATGTCCCCATTCACCTCATGTCCAACCCTAGGTCTGTCTGTATGCAGTACAGCACCACCAGTAGGATCCTTTCTCAGCTCATTTCTGGACCACTTCCTTTGGATTACTTTACCTCTTTTATGTTTAAACTGACATGGATATTTTAAGTCTTGTGTCTTTTGTTTCAGAGTACGTTTTATTGAACCTTAATTTCTAGATCTTTGAGGAATGGGTTGTACTGTATCTTCAAGGGGAATGTTGAAAGACACTGGTGAAACGTCCAGCTGTAAAGCTTGACCGTGTTTTGTCTCAATGTAGTATTTGTTCTTATCTTAAGACGGTTAAAGTGATAATCGGGATCTGTTTAAGATTGAACCCCATCGTTGTTTTACAGTTTTACAACTTAATGCTTTTAAAAGTGTCAGTAATCTTCCTAGTTTATTTCTTCCATTTtccatttttttacatttctgttTTGTTAATTCAGTGGTTTGGCATTTGAAATTCAAAAAGAACAATAAACATTTTACACTCTT

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K08892 FRK, PTK5; fyn-related kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU775629 lncRNA upstream 28443 18338445 ~ 18347351 (+) True G681084
TU775624 lncRNA upstream 41751 18333838 ~ 18334043 (+) True LOC110529194
TU775485 lncRNA upstream 56445 18319047 ~ 18319349 (+) True G680957
TU775484 lncRNA upstream 56851 18318163 ~ 18318943 (+) True G680956
TU775487 lncRNA upstream 65842 18309150 ~ 18309952 (+) True G680959
TU775704 lncRNA downstream 8277 18457761 ~ 18461807 (+) False G681151
TU775705 lncRNA downstream 8277 18457761 ~ 18464343 (+) True G681151
TU775721 lncRNA downstream 24285 18473769 ~ 18473996 (+) True G681167
TU775725 lncRNA downstream 27802 18477286 ~ 18478291 (+) True G681171
TU775728 lncRNA downstream 32001 18481485 ~ 18481710 (+) True G681174
LOC110529194 mRNA upstream 33686 18331547 ~ 18342108 (+) False LOC110529194
XM_036986828.1 mRNA upstream 58194 18310907 ~ 18317600 (+) True LOC118965599
XR_002474400.2 mRNA upstream 64730 18274367 ~ 18311064 (+) False LOC110529521
XM_021611766.2 mRNA upstream 67187 18274367 ~ 18308607 (+) False LOC110529521
XM_021611325.2 mRNA downstream 5494 18454978 ~ 18456213 (+) True LOC110529195
XR_005053018.1 mRNA downstream 8284 18457768 ~ 18459295 (+) True LOC118965607
XR_002474401.2 mRNA downstream 12146 18461630 ~ 18464743 (+) True LOC110529525
XR_005052823.1 mRNA downstream 19896 18469380 ~ 18578295 (+) False LOC110529197
XM_036984919.1 mRNA downstream 19898 18469382 ~ 18582050 (+) False LOC110529197
TU773135 other upstream 1480959 16893159 ~ 16894835 (+) True LOC110529505
TU772807 other upstream 1987458 16387450 ~ 16388336 (+) True LOC110529493
TU772802 other upstream 1987558 16387450 ~ 16388236 (+) False LOC110529493
TU772798 other upstream 1987717 16387450 ~ 16388077 (+) False LOC110529493
TU772775 other upstream 1989849 16384802 ~ 16385945 (+) True G678417
TU776513 other downstream 714452 19163936 ~ 19165640 (+) True G681909
TU777286 other downstream 1279349 19728833 ~ 19729671 (+) True G682611
TU778522 other downstream 2113391 20562875 ~ 20563434 (+) True G683669
TU778611 other downstream 2177466 20626950 ~ 20632899 (+) True G683757
TU778731 other downstream 2257574 20707058 ~ 20707371 (+) True G683845

Expression Profile