RNA id: XM_021611775.2


Basic Information

Item Value
RNA id XM_021611775.2
length 2429
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC110529526
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18582163 ~ 18587994 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTACGCTGACGTCCATATTGTCATACACTTGACATATGGAACCACGGCTTTTACCACCCAGCCAACGTTCCCCATGTCCGATTCTTCAtgcaatgaatgaatgaatgaatgactcGAAAATATATCAGCAAGTGTCGTTAAAGGAACCGTCAGTGCGCGcagtttgtttaccaaacgcactGGCGCAAGCTTCCCAACCAGCAGGATACAGCGCAGCCATAATTTGACAGTTCGACCATGTCTGCCTCGGCCGCCAGAGATCCTGTTGTGAAAACGAAGCATGTTCGTTTCGCAAGAATGAAGGAGGATGATAATAACGATGACCAAGAGGAACATACTCTGTTTGACAAGAGGAAAGACACAAGGCGAGGGGTGAAGAGTGTAATgaaagggaggaaggagagtTCGAATTCGGGGTCCGATGGTGAGGTTGAAATCATCGGTGGAGTTAGCAGCGCCAGCGGTTCTGGAGGCTGCAGCGGCTGGATCATCACCATGGCGCTCTGTGCATCGTTCCTCGGACTGGGGATGAGTATCTCTGTTTTAGGCCCCACGTTTCAAGACCTGGCCATCAATGTCAACCAGGACATCAGCAATATCTCCTACATCTTCGTAGGCCGCTCAATGGGCTATATAGGCGGCTCTGTGTTGTCAGGGATTCTCTTTGACTGCATGAACAGCCTTCTTCTGCTGGGTCTTTCCATGTTGATCACAGCGTTTGGGATGTTTGCAATCCCTTTCTGTAAGACGGCCCTTCTCCTCACTGCTCTGATGTCCAGTATTGGAGTTTCTATGGGCTTTCTAGATACAGGTGGTAATGTCCTGATCTTGCAGACGTGGGGAGATCAGGCTGGCTCTCACTTGCAGGCCTTGCACTTCAGCTTCGCCGCAGGGGCCTTCGTTTCGCCCATCATCGCCAAGCTGCTCTTTGGAACAGACTTGGAGCTGGATGTGGCTACGAACGGCAGCATGGCAGCCCCGCCGGTAACATCGGCCTCCCCACCTGTCACAGACGATGTGTCCCAAACACAGTCCTCTTATACACCCAAACGCTATGTCCTCAGTAGCAGCACCCTCAAGTCCATGTGGGCCTACATTGTGATCAGTGGTTTCATCCTGTtaatctccctcctcttcttcatcctctacgcCCGCCACAGGCCCCCTCAGGGCAGGGCACAGACCCCCTCAGGGAAGCACCTGGTGTCAAAGCATCACAACGCACTCATCGCCAtgctctttgtcttcttcttctggtACGTGGGGGCCGAGGTGGCGTACGGCTCCTTTATCTTCACCTATGCTAAGGATTATATCCATATGGACGAGGCCCAGGCAGCAGGGCTCAACTCCCTGTTCTGGGGGACGTTCGCTGCCGGCCGGGGCCTGGCCATCTTCTTTGTGTCCTGCATGCAGCCAGGCACCATGATCCTACTGAGCCTGGTGGGCTGcaccctgtcctccctgttccTCACCCTCTTCAGCAGTAACAGGGTGGCCCTGTGGATCTGCACTGGTGTCTATGGTGCCTCCATGTCGACCACTTTCCCCAGTGGGATCTCCTGGGTGGAGCAGTACACCACAGTGACGGGGAGCTCGGCGGCGGTTTTCGTGGTGGGGGCAGCCCTGGGGGAGATGGTCCTGCCCGCTCTGATGGGCTTCCTGTTGGGGAGGATCCATGGTCACCCCCTGTTGATGTACCTGACCCTGGCCACCGCCACAATGACCTCCATCCTCTTCCCCTTCATGTTCTGGCTGGCCTCGTCCCCCAGCGGCCCCAGCAGGACACCCCGCATCAGGGGCCGCAAGGAGCCTGACGACAGTGAGTACCGCCAAGGCCTGCTGGACTCAGGAGCcaatgatgaggaagaggagcagcaggaggaTGACGAGGCAGACCAGTGGAATGACGCCGACTTTGAGCGTTGTCATCTCCTAACAAAGGGCTCCCACCACCTGATGTTACGGGGACATCAGGCGACCTCAGTGCCACATCTGTCCCCTCTACTGCCCAGTCCCTAGAGCCCACAGTTGGGACCTCTTTTTCAGACTCTCCCGCTCTGCTGGGGGACTCACCCGGACAGAAAATGCTGCTTTCCCTGGACCGGGAAAAGAGGGACTAGGGGCTTTATTCAAACCATATCGTGGAAATtcagcgtgattgaaatttaaaggcaatgttcccacatTAGCAGAGAatacattcacggtaaacgctgcataaaTCAGCTCAATCCAAAAGTACTTTGACATTTCTAGTGCGCAATCGGTAACGCTTCAGCGATACACATTGAAGAGCCCTAAACCTGGGTGGGATTCAATCCAATTGCGTTTTGTCCGCAATGGTCCTTTAAAGGCATTGTTCCCTCGTTCGCGGAGACCgcattcacagtaaacgctgcatatgtcggatAAATCGGAAATTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU776103 lncRNA downstream 40256 18542190 ~ 18542648 (-) True G681525
TU776094 lncRNA downstream 56631 18526048 ~ 18526273 (-) True G681517
TU776085 lncRNA downstream 75412 18507290 ~ 18507492 (-) True G681508
TU776084 lncRNA downstream 77638 18504999 ~ 18505266 (-) True G681507
TU776081 lncRNA downstream 87464 18495120 ~ 18495440 (-) True G681504
TU776140 lncRNA upstream 840 18588834 ~ 18589298 (-) True LOC110529198
TU776145 lncRNA upstream 4603 18592597 ~ 18592906 (-) True G681562
TU776169 lncRNA upstream 38730 18626724 ~ 18629798 (-) True G681586
TU776243 lncRNA upstream 200071 18788065 ~ 18789040 (-) True G681658
TU776242 lncRNA upstream 207580 18795574 ~ 18796382 (-) True G681657
XM_021611765.2 mRNA downstream 510310 18069152 ~ 18072594 (-) True LOC110529520
XM_021611761.2 mRNA downstream 747353 17756253 ~ 17835551 (-) True LOC110529517
XM_021611758.2 mRNA downstream 826863 17728290 ~ 17756041 (-) True LOC110529514
XM_021611757.2 mRNA downstream 859031 17720967 ~ 17723873 (-) True LOC110529513
XM_021611756.2 mRNA downstream 862709 17706609 ~ 17720195 (-) True LOC110529512
XM_036984921.1 mRNA upstream 824 18588818 ~ 18674196 (-) False LOC110529198
XR_005052824.1 mRNA upstream 824 18588818 ~ 18674196 (-) False LOC110529198
XM_021611777.2 mRNA upstream 88614 18676608 ~ 18687665 (-) True LOC110529527
XM_021611778.2 mRNA upstream 102457 18690451 ~ 18714820 (-) True LOC110529528
XM_021611785.2 mRNA upstream 288740 18876734 ~ 18883214 (-) False LOC110529532
TU773944 other downstream 1468376 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 1952645 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 1952645 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 2149890 16432621 ~ 16433014 (-) True G679087
TU770677 other downstream 4066376 14511590 ~ 14516528 (-) True G676635
TU776244 other upstream 203236 18791230 ~ 18792137 (-) True G681659
TU779858 other upstream 2890772 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 3332433 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 3332433 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 3571036 22159030 ~ 22161042 (-) False G685953

Expression Profile