RNA id: XM_036984925.1


Basic Information

Item Value
RNA id XM_036984925.1
length 2920
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110529536
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18902235 ~ 18906394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCGTGTGCACCTACGTTATAAACTTCTAGAACCGTACCGCAATTGAGAATTGATTCACGTTTAGTTTGAGAATTTGGTTGTTTTGGGCTAGGAATTCTCTCCCGGCCTTCGTTTCAATGATCCACCACATCAACACTGAGTAAACTGTCATATTAAGCGTATCCATGGCAATCCTATGTTTCTGAAATGTTAGCGAGTTATCTGAAATATAATACTAACAAGTTAGCTAACATTTAgctttactagctagctagcaatatgCTATAGATTGGCAATGGTTAGCAATCTTGCTAGCAGTAGAATAACAGTTGATATTTTAATTTCAGCAAATGTCGTTATcaaatgtaggctgtgtgtaaccAGACATTAACGTTGGTGCATGTTTTCTTACTTTTAGGCCGTTCTGTAAATAAATCAATGACTATATCACCAAATGTTGTTTCAAGAAGAACCGCCATGCTTGCGCACGCGCTCTTGATTGATTTCGGTGTCACTTGGGCCGGGGGTGTTGTTTCCTCCACGATCATACAACAGCTAGAAGATGGCGATGAAACGAACATCAGTTTATACTCTATGTGTACTGTTTATGTCATTCATTTTCGCTGAGTCTTCACCTCGACAATTGAACACGGAAAGTATTCTGATCAATGTGACAGCAGGGACATTGAATGATACACAGGTGCAGGAGTCCAACAACTTGCAGATCAACCTGAATATTTCAGTGGATGAAGAGCAGGTGCTCATCAATGACATCCCTGTGGAGTTGTCAGGGGTGACCAGGTTGAACTGCCAAGCCTTGCTGTTGGATACCACCAATGGCACAAGTGAATTTGAATCTGGTGACTATGTCTCCACTGTCACCCGGGTGATGGTGAGCCAGAATCGCTTGTGGAGTGATTCAGAAGAGGTGGTGGCTCTCCAAGTGTTCAGCGAGGTCATCGAGATGGAGGGGAAAAAGGTCCAGCAGCCAGAAATGTGTGAAGTGAAGATACTGATGAGCCCCAATTTCCAGACGCTTGCGCAGTATACCAACACCTATCCCATTGGACACAGCGAGATTTTCAGGATCCCAAGGGAAAATGATGTGGTCATCACAGATCCAACAAATCCTAAAAAAGCTGAATACCAAGTGATGTCCCAGACCACCAGTCATTACCCTCTGAAGCATGCGGACACCACCCAGGAGGAGACTGCTGCCCCAGGCAAGCTCCCGGAGACTCCCCTCCGCATGGACCCAGACCTGCTGTATGATAACAATGAGGGTGATGACTTGGGAGGGCTGTCTGATCAGATGCAGACAGAGGCACCACTCAAAGAATCTCTCTCTTCTTACAGTGCCATGTGTCGAtgggtggaggaggtgagggaccgCCTGCGACGCTTCTGGTCTGAGTCCTTGCCCCTGTTCTtcttggtcatgtgggtggtagTGATTGGTGTGGTTGGGTCAGCGGTCATTGTCAAGATCCTGGACATGTTCTTCCCAACATGCGAACACAAGGGAATTTTACATTTAAATCCTGTGACTCTGATGCCGGAAGATGAGAAACACACCCTGCTGGAGAACATTGAAatagaggtagaggaggtgaAAAGGCCTTCATTGAAAACTGAAGAGTCTGATTGCATCTGTTGAAAACACAAGGCATTATGTGGTTAGAGAAACCATAATCTCTTTGTAGCACTTATTACACATGCATTGCAAAAATAACATGTTTAGCTTTATTTCTCAAACATTATACCCTCCTCTCAAAGAAGGAATCTGAAATGTTACTAGTGGAAGCAGAGCTGCATACTGCATTATTTTTCATATTATGATTGTGTTACCTCACAGTGCCTCTGTAACCATTCTACTTTGCATTATGAAATACTGACTTCCTATTGGTTTATTTTTGATTGCTCATTTCATATTTTATCATTCTGACTGGAGGATTGAACTGAGGATTTGGTGTTTGTTTGCATGCAACTTTAAATCATAAGAcaaactgtttttatttactgTATTTGAACCAGTGCATCATATTGTCAGAGCCTCACCAATGCATTTGTTGTAAAATGTCAAAACATTTTTACGTTGGTATTACATTTTGTTTGAACTTGACGGGCCTGCGCTTAGGTTCATTAAAGGACAGGTGGTCCTAGTCTTGCACCCATCATTATGAGTCGAACAGAGACTGAGCAAATAGAAGATCTCATTCCAACCATTTCAGTTGATAGAGACAGATGGCAGTTAGTTCCTGTAGGTGAATGATCTGTCACAGAACATTGCagatagacctggaaagtatagAACAGACATTAACTGCTTTAGTGTCCTGTCTATACAGTCCATTTCTGTTCACTCTGAATATACTCCTGCTTTATGCCTTGAAATGTATGAATATGGTTACTGGATGTTCTTTGCAATATGAGTGAATGACAATGGATGTTCTCTGCAATGTGAATTACTCGCAATGGCCGTGCACTGTCAACATAGACATCTGAAGCTACACTAATAGGACCTTATACACTTTAGTCTAAGAATAGTCAAACCTACTCCTCCCAATagcttattggctggtttgcctCAAAGCAGGCTAGGCATGACCAAAATAAAATTGTATCAATGTGATTCTCAAGATTAGGCTCATGGTTGACATATGGGGCCCTGGCACATTGACTTAGTAGCCATAGTATGGGATGCAGTTAGCTGTCAATGAAACAACTTCATAATAGGAAACTGCATGCTGATTTGAACTTGAGTGGGTGAATTAGAACTTAGTTATTTTACATTTTGCTTCTATGGTgcctcaattcaatttcaatctTGTGTTTTACTAAACGCATGGGAGCATGGCATGTGTGCATCATGTATTTTCATTCAAATCAAACTGTACATTGAATTCCCAAATCCTGCTCAATAAAAATGTTTCTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU775921 lncRNA upstream 13344 18888638 ~ 18888906 (+) True G681359
TU775897 lncRNA upstream 98164 18803857 ~ 18804086 (+) True G681336
TU775896 lncRNA upstream 100507 18801394 ~ 18801743 (+) True G681335
TU775844 lncRNA upstream 105653 18794882 ~ 18796597 (+) True G681283
TU775858 lncRNA upstream 108237 18792365 ~ 18794013 (+) True G681297
TU775931 lncRNA downstream 6097 18912491 ~ 18912967 (+) True G681369
TU776386 lncRNA downstream 106432 19012826 ~ 19013045 (+) True G681788
TU776388 lncRNA downstream 107778 19014172 ~ 19014412 (+) True G681790
TU776398 lncRNA downstream 117282 19023676 ~ 19023881 (+) True G681800
TU776451 lncRNA downstream 178122 19084516 ~ 19086756 (+) True G681851
XM_021611782.2 mRNA upstream 25699 18806518 ~ 18876551 (+) False LOC110529530
XM_021611794.2 mRNA downstream 18604 18924998 ~ 18936498 (+) True LOC110529539
XR_005052826.1 mRNA downstream 36765 18943159 ~ 18948106 (+) True LOC118965498
XM_021611805.2 mRNA downstream 250868 19157262 ~ 19161639 (+) True LOC110529547
LOC110529202 mRNA downstream 468379 19374773 ~ 19537068 (+) True LOC110529202
XM_036986830.1 mRNA downstream 628526 19534920 ~ 19539445 (+) True LOC110529203
TU773135 other upstream 2007415 16893159 ~ 16894835 (+) True LOC110529505
TU772807 other upstream 2513914 16387450 ~ 16388336 (+) True LOC110529493
TU772802 other upstream 2514014 16387450 ~ 16388236 (+) False LOC110529493
TU772798 other upstream 2514173 16387450 ~ 16388077 (+) False LOC110529493
TU772775 other upstream 2516305 16384802 ~ 16385945 (+) True G678417
TU776513 other downstream 257542 19163936 ~ 19165640 (+) True G681909
TU777286 other downstream 822439 19728833 ~ 19729671 (+) True G682611
TU778522 other downstream 1656481 20562875 ~ 20563434 (+) True G683669
TU778611 other downstream 1720556 20626950 ~ 20632899 (+) True G683757
TU778731 other downstream 1800664 20707058 ~ 20707371 (+) True G683845

Expression Profile