RNA id: XR_005053036.1


Basic Information

Item Value
RNA id XR_005053036.1
length 56
RNA type mRNA
GC content 0.39
exon number 1
gene id LOC118965655
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 19875933 ~ 19875988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acatgttATGCtattttagtatttctccagtaggtttcctcaaggagaaagcctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU777278 lncRNA upstream 7730 19867100 ~ 19868203 (+) True G682605
TU777279 lncRNA upstream 11970 19857274 ~ 19863963 (+) True akap7
TU777078 lncRNA upstream 227438 19648203 ~ 19648495 (+) True G682425
TU777077 lncRNA upstream 227892 19647753 ~ 19648041 (+) True G682424
TU777011 lncRNA upstream 237561 19637014 ~ 19638372 (+) False G682359
TU777414 lncRNA downstream 61977 19937965 ~ 19939193 (+) True G682735
TU777413 lncRNA downstream 63605 19939593 ~ 19940086 (+) True G682734
TU777667 lncRNA downstream 74559 19950547 ~ 19950908 (+) True G682923
TU777669 lncRNA downstream 76218 19952206 ~ 19952430 (+) True G682925
TU777685 lncRNA downstream 91793 19967781 ~ 19968082 (+) True G682941
XM_036984965.1 mRNA upstream 13907 19832891 ~ 19862026 (+) False akap7
XM_036984966.1 mRNA upstream 13907 19832891 ~ 19862026 (+) False akap7
XM_036984969.1 mRNA upstream 13907 19832891 ~ 19862026 (+) False akap7
XM_036984970.1 mRNA upstream 13907 19832891 ~ 19862026 (+) False akap7
XM_036984971.1 mRNA upstream 13907 19832891 ~ 19862026 (+) False akap7
XR_005052829.1 mRNA downstream 51764 19927752 ~ 19930247 (+) True LOC118965499
XM_036984975.1 mRNA downstream 56445 19932433 ~ 19937792 (+) False LOC101268947
XM_021611838.2 mRNA downstream 56545 19932533 ~ 19937792 (+) False LOC101268947
XM_021611839.2 mRNA downstream 56545 19932533 ~ 19937792 (+) True LOC101268947
XR_002474414.2 mRNA downstream 175552 20051540 ~ 20060435 (+) False LOC110529562
TU777286 other upstream 146262 19728833 ~ 19729671 (+) True G682611
TU776513 other upstream 710293 19163936 ~ 19165640 (+) True G681909
TU773135 other upstream 2981098 16893159 ~ 16894835 (+) True LOC110529505
TU772807 other upstream 3487597 16387450 ~ 16388336 (+) True LOC110529493
TU772802 other upstream 3487697 16387450 ~ 16388236 (+) False LOC110529493
TU778522 other downstream 686887 20562875 ~ 20563434 (+) True G683669
TU778611 other downstream 750962 20626950 ~ 20632899 (+) True G683757
TU778731 other downstream 831070 20707058 ~ 20707371 (+) True G683845
TU779216 other downstream 1201082 21077070 ~ 21078871 (+) False G684314
TU779504 other downstream 1543360 21419348 ~ 21424392 (+) False LOC110529590