RNA id: TU778196


Basic Information

Item Value
RNA id TU778196
length 5131
lncRNA type sense_over
GC content 0.37
exon number 7
gene id LOC110529565
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20294639 ~ 20379353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtgccttggtcctcctttctttttgattaccaatttaccccttttaccaaagagcaccttctatctaccaaaatgtactattgtgtaccttagtagcgcttcccttcctcctctttctactagaAAAGCTTTTACAGTTTTGACtcaaatcgtcttgaaaatctatggctgactagcaatttgacagagcttcaagaataatgtgcaaatatttgcacaatccaggtgtgcaacaATCTccaagacttacccagaaagattaaGTCAATGACAtgtattgattttttttaaattcaggctgtaacacaacaaaacatggaataagtcaagaggtatgaatactttctgaaggcactgtagtaTTTTTTTTAGATCTTGTGATGGGAAAAAGTgtttttttattaagttgaacatgtgctctttattaCAGAATATTAAAACTAGgtgaaattttaaaaaatcaagtTACATTACTCAAGACACTTCATTTGCTCTAATTTGTATATATTGATGATAGGCCTACAGTAGGGTGAAATAGGGTATTTTCTGGATATTACGTATCCTTTTGCATAACCAATGCATCTATTTTCATTTGTATGAATAACAGATTTTAACGGTTTATCTCCCTTGTGTAGTTCCAAACAAAGAATCTGGTAGCTTTGTGAGATTCTCAAGAGTTTGCCTTTAACCATAAAAAAACACACTTCACATTTTATCCTAGCTTTACTCTGGGGTAATTTAGACCAACCAAGATACACTTTAAAGGCCCTTTACAAATTCAACTTGAATTATTGTTTTGTAGAGCTTCGTGCTGAAACGTATTTTGTGAAtgatcagggtagcctagtggttagagcgttggattagtaaccggaaggttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaaccaactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaataaaataaaataaaaaacatgctgGTGATATTGTAGAATGTTGTGTAGGCAAGACCGGTAGCTATGAAGGAGATTTGCATTTGTGGCCTTTGATTGGATTCTTATTGGGGTCAAAACCCAGATTCCTACTGTATGTCTTACAGGACTGCAGACAACACTGAACCTGATTTATACGTTTCCACACAAGGATATGAAAATATGAGTAGAGTATGTGTAATATAATCTTCATCCAGTTTTAAAAGAGACAAGAATCTATTTGGGTTTGTAACATAGATTGACCTGAATGACTGCTAAGATGTTCATGCTTCTACTGTTTGATGTGTAAACCTTCCagctagataagaggaatacatACCACTCATATACATTTTTCCCCCTTCTTGCATGAGAAGAAGACAAGGTAAAGGATGTGAAGACATCAGATGCCAAAGCTGAAACCACACTCTCTGTGAAGACAGCCCAGCCCACTCAACCACATAAAGCTGAGAAGACTGAGAAGAAAGCTGTGAAGGAGGCTAAAGAGAAAGAAGTGAAGCCTCCTGGTATAGCAAAAGAATCTCAGACTGACGATAATGCCATGGACAAGAAGAAGCCAGGTCAGAAAGTATTGCAGTGTGTTTTAATGGTTGGAAAGAATGCCCACTACCCTTTGCGACCTTCCACCCCTGGTATGACCCCTGTGTCGATGAGCCCAGCCATGCGGTCCATGATGTTGCAGCAGGCGCAGCAGCAGAAAGCCAGAGCGGCGGGGCAGTAGACGAGCTCCTCACCTCCATGCTGCTCCCTCTAGTCAGTCTGCACGACAGCTTTAACCAGGATAATCAGGGACTAaaggggaaggatggatggacagtacagtattatttatttttctatgACCGGTTGAGCTCCCGTGAGTTAAGTCAATGAACTATTTTCCTTTACCTGTGGCTTTGCCGCTTTTGATAGCGCTCAGTGCTGAGTCCTTTGTGATCTATGTTTTTCAACAGATTTATTTATAAGAAAAGGAGTGTAAGTTATGCCTATGTATTACCTTAGGAAGCAAACGGAATTGATCATTTCTGTAAATTTCAACCAAATTCAATGTACATATGCATATAAATTGTAATTAGGCTCAAGTTcaatgtatataatgtacatgTGATATCAACATCCTGCCATTTTCATTTGTTGAATAATTACTTCACGTTATCATTTTTTCATTTGTTACTTTTATCACAACATTCATAATGACATTCATAATGAGTTCAGAATGACAAAACATCTGTAAATTGATTTTAGGGTCATACATTACCAATGGCACTGTGATTAAAATTTAGTTTAGTTTTCATTTCATGTTTTGATTCTATTTTATTAAGGAAACAAATTGAACATGCTATACAATAACAAATGAACAATATAGCTCACTTTCTCCGAACATGTCCATGTCTGTATGCGTCTGTTGATGTGTGACATACCCTGCCATTATTGCCGTAACAGGAAATCCTAAGCCATTTTTTAAGACTATGGTAATAGTTGAGCATCAAATAAACAGTGACAATCTTCATAATCATTTTAGAAATTGTGTGCATCACAGTTTGATCATAAAAGAGGATCGATATTTGTATTTGTATAAAAATTGCTGAAATTTATATTTtagatataatattattattatttttttttttaaatattcatCAAATTAGTTTGCCTGCCAAAGATAACAAGAAGTTTTCATCTACAGTAAACGTTTCTACTCCTTGTCAGATGTTATTAGATAAGGTATGTTAACACTAACTGTAGTTATCTGACCAGATCTGCATAAAACACATAGCTTAAGAACACTGCCTTATCACTCATTACACACACTGTAAAGCAAGGTGATGTTATGTTGTCATTTTTGTTTGATATGCTACTTCCATGTAAATAACTGCATCAGCTTGTATCTTGCTGCTTGGCATATTGGTAAAGAATTGTGGGAAGATGACTATGGTACCATTTCTCATGGAAGCTCCCGTTGTTAACCTGAataacctcttctctctctctctctcctgtgaggagtgtgtgtgttcactgagAATGCAACACTAGAGGTCAAGTCAATGACTGTCCacatatgttgttgtttttttacaactGACAATGATTCTCGTGAGATGGTGTTATGATGTCATCCTGTGATATATAGGTGTGGATGACTTTATCATCGCTGTCATGTTACTATTATGGCGCTTGCTGCCATGCGCAGCAGCCTACTGCTGAATCATGTTCAAGTAGGAGTGCCTTTATTCTGATAATGGTGCTGCTGTGCTGAGTCCAGCGTATCCATTGTTGTCTTACTCAACTAAAGACTGGTGTCAGGAGTCCATGTTTCAAGACCATGTGAAAGAAACTATTGGGCCTGAGATCAGATGTCCTTTATACAGTAGAAGGGAAAATAAGAATGCTCAGTAAGTGGTGGCTTGAGAGCCCATACTGTGAAAGCCTGGTTACCTTCTCTATTCAGCTATTACATTCCCATCCCTGCCACTCCTGTCATTTGCCAGCTTTGGTAAATGAcaggagtggcaaggagtggaatgttagctaaaaagaCTGGTAGTCAGACTATTGAAAGCATGAGAGGGAAGGCCGAGAAACTCTACTTTGTTTTGACTGTAGCTGTCTCAGCCTGTTGTATGGTATCTACCATCTATCCATACATTTTGCAGTGTCACATGCATCCACAGTCCGCAACAACAGCTCAACAAAGTCTTGTGAAGTAGGCCAAAGGAAAAAATCTTGACTTTGAAGTTCCAGTGCACCATTTCCTGTACCACCAGGGGAaatgctgctgtctgtctgctgtgtgtTGTTTTCTGTGGATCTGACTGATGGAGGCAGAGTCCCCACACTTATCTACAATGCAACAACAGAGATTACactaattatatatttttataattaTAACTATGTCTTACCTTTCTATTCTTTTGTCAGAGAAACGTATTTACTCTTGGCAGAATGGACTTGTTGGTTGACTGCTCTTTCATTATGAGCTCGGTCACACCATCATACCTTCCCAGTCATTAAGTATAACAAAGCATTGACTAGACAACCGTACAGTATGATGTTTAAATACCTGATGTTTACTTGATTTACAACATTGCCCCTGGCACATTGTGGAATGTCTTGACAGAATACAGACCTCAGATATACATGATTAATAAGCACGGATTCTGTGCTGATTATGTTAGCTGTAACAGTGTCATTTTAAAGACAATTATTCACAAACTAAATATATTTTGGGTTGTTTTGTTCTTTTGGACGATTCATTTTTGGTAATTTCCTGTATATTATGCATGACTATtatttaagaaaatacaaaacatTTGTCAGTTATTGTCTCTGGTTCTATGTCTCAGTTACACTCTGGTGAGCACTGTAGGACTTGAAATATTAGCTTTAATCATATCTCAGTCAGACATCAGTTGAGCTGTAAAGGATGGATATAGATAGCTTTACTATGAGATGTGTACGCTCTGTTGATTTGAGACTTCCCATTTATACAGAAGAGTTTCCTAACATGCACGGAGGAAAACAAACTCTCAGCCTTAAATATCAGATATGTTCCCAAACACTAATTACATCCCAGATTAATTGTCTTGCCAAAAATACATACTTTATTTTGAGCTATTCCTTTTTATAGATATTTATCTTGTCAATGCTCCATTACTAGATTCTGAGACTATTTCTAAACTATGTTTGCCTTCTGTAGTTACTGTATGTTCTGTAATTGATCACAACATGATGCCACTGATGCTGTTCTTAAGTTgtagtttgttgttgttgttgcagttttaACAAAGTTCAAACCATTATTTAAACAGCAACGCAACAACACATCAATCAATGCccagaaatatatatttaaagtATGTTGTACATGGTGCATAAAACAACTGAtaactgatttttttttaaagcatttatCAATTGTTGCAGTATTTATAAgaatgtattgttttttttgttttcagAACAATGTGCTCTTGACTTATTTTGTTGTTAACCTCATTTTTGTGTATATATTTAGCAAAACGTGGACTGCACATGGCAATGCAATGTTAGCGTTACAAATCGAGTAAACatgtcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU777954 lncRNA upstream 89472 20279478 ~ 20279706 (+) True G683197
TU777953 lncRNA upstream 89928 20279047 ~ 20279250 (+) True G683196
TU777950 lncRNA upstream 98830 20270121 ~ 20270348 (+) True G683193
TU777903 lncRNA upstream 134764 20212234 ~ 20234414 (+) True G683147
TU777820 lncRNA upstream 220611 20116719 ~ 20148567 (+) True G683070
TU778302 lncRNA downstream 33579 20412909 ~ 20413122 (+) True G683466
TU778313 lncRNA downstream 57966 20437296 ~ 20439013 (+) False G683477
TU778318 lncRNA downstream 57966 20437296 ~ 20439013 (+) False G683477
TU778320 lncRNA downstream 57966 20437296 ~ 20439013 (+) False G683477
TU778323 lncRNA downstream 57966 20437296 ~ 20439013 (+) False G683477
XR_002474414.2 mRNA upstream 308743 20051540 ~ 20060435 (+) False LOC110529562
XR_005052831.1 mRNA upstream 308743 20059453 ~ 20060435 (+) True LOC110529562
XM_036984975.1 mRNA upstream 431386 19932433 ~ 19937792 (+) False LOC101268947
XM_021611912.2 mRNA downstream 91827 20471157 ~ 20477447 (+) True LOC110529573
XM_021611918.2 mRNA downstream 256075 20635405 ~ 20637793 (+) True LOC110529577
LOC110529580 mRNA downstream 275829 20655159 ~ 20682999 (+) False LOC110529580
XM_021611921.2 mRNA downstream 446184 20825514 ~ 20992358 (+) True LOC110529582
XM_036985002.1 mRNA downstream 630991 21010321 ~ 21116297 (+) False LOC110529583
TU777286 other upstream 639507 19728833 ~ 19729671 (+) True G682611
TU776513 other upstream 1203538 19163936 ~ 19165640 (+) True G681909
TU773135 other upstream 3474343 16893159 ~ 16894835 (+) True LOC110529505
TU772807 other upstream 3980842 16387450 ~ 16388336 (+) True LOC110529493
TU772802 other upstream 3980942 16387450 ~ 16388236 (+) False LOC110529493
TU778522 other downstream 183545 20562875 ~ 20563434 (+) True G683669
TU778611 other downstream 247620 20626950 ~ 20632899 (+) True G683757
TU778731 other downstream 327728 20707058 ~ 20707371 (+) True G683845
TU779216 other downstream 697740 21077070 ~ 21078871 (+) False G684314
TU779504 other downstream 1040018 21419348 ~ 21424392 (+) False LOC110529590

Expression Profile