RNA id: XM_021611918.2



Basic Information


Item Value
RNA id XM_021611918.2
length 1930
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC110529577
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20635405 ~ 20637793 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGAACGACGTGCAAGTTGTCAGAGAGTATGGGGCTGGATGGGGTTGACCGGATGATTCAAACTGATGTCAAACTATAAGAGGGGAGAGTTCAATTCATTAAGAGAGAATTCCCCACAGTAGAGAAGAACTGGTGTGGGGAGATTGTGCTCACCTCTGAGCCATACCTGAAAAATGGGGGACTGGTCCTTTCTTGCTTCCCTGTTGGACAAAGTACAATCCCACTCTACAGTTGTTGGGAAGGTTTGGCTGACAGTCCTGTTTGTGTTCAGACTGCTGGTTCTGGTGGCAGGGATAGAAAAAGTATGGGGGGATGAGCAATCACGTCTGGTCTGCAACACACTGTCACCAGGTTGTAAGAATCTGTGCTACGACCGGGCTTTCCCCATCTCCCACATCCGCTTCTGGGTCCTTCAGATCATCTTCGTCTCCGTCCCAACTCTGGTTTACCTGGCACACGTCATGCACGTCATCCACAAGGAGAACAAACTGAGAAGACAACAATCAAAAGGAAAGAATGGAATCGTGAAAGTGCCCAAATACACTGATGACAATGGCAAAGTTCACATAAAGGGGACCTTGCTTGTCAGTTACATGTCCAATGTGTTTTTTAAGATTCTATTTGAGGTTGGATTCATAGTGGGCCAGTATTACCTGTATGGCTTTGTGTTGCCCAGTAAGATTAAATGCAGTGGATACCCATGTAAGGGAGACCATGTAGAGTGCTTCATATCACGGCCCACTGAGAAGACTATCTTTATCATCTTCATGCTGGTGATGGCCTGTGTGTCTCTGCTGCTCAATGTGGTGGAGATGTTCCACCTGATTGGATCAAAGGTTAGGCAGGGGTGTAACAGACAACCTCCTGCAGCTGAGAGGTATGCACTCCATGATAAACACAAGCAGTTTGATAAAGAGTCATTCCGCTGAATATTCAGTTGAATCACTGTCTATCTTAATTTGTTTTCTCATGTACAGTATGACGAGAGCCATTGACCTCACAATTATAACAAGAAATCCCCAATgcaatatgttgttgtttttaccgCTGCTCTGTGACTCTGTTGTGTAAAATTGATTGAATGTACTGCCTATATGTTTAATGTGCAGTAAAAACTGGGATGTTCTAACAAATTCTAAGACATTGCTGAGTTGTGACTAAAATGTCTCTGATGTCTGACGATTACTAGAGGAGACTAGATGCATAGGCACTACTGACAACCGAATTGGTTCTTTTTGTGCATTTTTTGTTTGGGATATGAATCATGAAATAGTGCTGTGCATTTGATAAGGACGTGCCTTTTCAACAAatacaacaaatcaaatcaaagtctaTTTGTTGCATACACAGATTATCTTGTCTGGATCCATGCAGTCATATATCAAGCATCAAATTTGAGTTCACTGAGTTTTATAATGTTACATAATTTCTCTTCACATACGCAGCTGTAGACTAACATTTTTTCATGATGTAGTCAAAGCAAACTTTCACTGAATGGTACATAGGTGATTCACTTTTGAAAATGCCACCTCATCAAAATCTAACTGATGAAGTACTTATAATTGCATCTCCTACAATTCAACCATACTTGACTCAATATTATTGTACATTCCTGCAGATATAAATACAGTGTGTAGACTAcagccactgggcacagacatcaattcaacgtaatttaattgaaatgacgtggaaacaatgttgattcaaccagtgtatgCCAAGTGGACAGCCTCATTGTACACATATTTGTTATGGTCAATTACCATGACAAGTTTGTTTGACCTCTTGACTCATGAAGACTATGCTGTGTATATGTTTTATGTTTTGGTCTGAGTCAATGAAATCACtgatataatatacagtacacataAAGTCCTGTTTTGCTGCACAATTTACTTTTTTATATATGATGTACATATAGAGAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU778613 lncRNA upstream 1009 20633481 ~ 20634396 (+) True G683759
TU778553 lncRNA upstream 48587 20586607 ~ 20586818 (+) True G683700
TU778524 lncRNA upstream 71615 20563487 ~ 20563790 (+) True G683671
TU778484 lncRNA upstream 104330 20530859 ~ 20531075 (+) True G683633
TU778450 lncRNA upstream 126293 20508899 ~ 20509112 (+) True G683599
TU778641 lncRNA downstream 11261 20649054 ~ 20650803 (+) True G683766
TU778619 lncRNA downstream 15074 20652867 ~ 20660914 (+) False LOC110529580
TU778620 lncRNA downstream 15074 20652867 ~ 20660914 (+) False LOC110529580
TU778628 lncRNA downstream 15074 20652867 ~ 20660914 (+) False LOC110529580
TU778630 lncRNA downstream 15074 20652867 ~ 20660914 (+) False LOC110529580
XM_021611912.2 mRNA upstream 157958 20471157 ~ 20477447 (+) True LOC110529573
XM_036984994.1 mRNA upstream 256052 20294640 ~ 20379353 (+) False LOC110529565
LOC110529580 mRNA downstream 17366 20655159 ~ 20682999 (+) False LOC110529580
XM_021611921.2 mRNA downstream 187721 20825514 ~ 20992358 (+) True LOC110529582
XM_036985002.1 mRNA downstream 372528 21010321 ~ 21116297 (+) False LOC110529583
XM_036985008.1 mRNA downstream 372538 21010331 ~ 21111196 (+) False LOC110529583
XM_036985006.1 mRNA downstream 372538 21010331 ~ 21116297 (+) False LOC110529583
TU778611 other upstream 2506 20626950 ~ 20632899 (+) True G683757
TU778522 other upstream 71971 20562875 ~ 20563434 (+) True G683669
TU777286 other upstream 905734 19728833 ~ 19729671 (+) True G682611
TU776513 other upstream 1469765 19163936 ~ 19165640 (+) True G681909
TU773135 other upstream 3740570 16893159 ~ 16894835 (+) True LOC110529505
TU778731 other downstream 69265 20707058 ~ 20707371 (+) True G683845
TU779216 other downstream 439277 21077070 ~ 21078871 (+) False G684314
TU779504 other downstream 781555 21419348 ~ 21424392 (+) False LOC110529590
TU779505 other downstream 781555 21419348 ~ 21422800 (+) False LOC110529590
TU779521 other downstream 781555 21419348 ~ 21424392 (+) False LOC110529590

Expression Profile