RNA id: LOC110529580


Basic Information

Item Value
RNA id LOC110529580
length 3019
RNA type mRNA
GC content 0.43
exon number 16
gene id LOC110529580
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20652867 ~ 20682999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCAAGTGCACTGGGAGGCCATGCAGGGTCTGTGTGATGCATAGACCTCGGATGTGCTGAGCTGTGGGAGTTGGAGCAGCCTGCATAGGAACCTCTCAGCTGCACTGGCTGACCCAGACCCTGACCTCAGTGATAAGGTCCGGGGCTTTTTTATCAAAAACATTCTCTTCTCCACTGAATGTAATAAGAGAGATCTACAACAGTTTAGCTAAAAGTCTGGAGTCTGACTTCATGTACCTTAAACTGGGGCTCCCGAGCAGTCTAAGGCATTGGATCTGTGCTTGAGgcgtaaacaagaatttgttcttaactcacttgcctagataaataaaggtaaaaaaatcaaTAAACTGACTGGATCGGTTGGGATTGAGATGAGACTAATGAATGATTTTCAGAAGGAAGTGACAATCTTTTGGATTCGCCACCCACAAAAGTACATGGAGGAGATAATAGAGTactttctccctcctgtccttACACCCTGAACACGGGTTAGAGACACAAGGGTCAGAGAAAGCCTTGCACCTCATTGCCTTACTGGATATCAAAGCCACCTGGTTTAATAGGTGGATGTATGGTTACTACAGCAGGACCGAGGTCTACAGGCTTCTGGAGAGGAAGTACAAGTCTCTGATTGTAGCAGCTCTTCAGCAGTGTATCTATTGAGTCCTGTGACCCATTCATAGACTAGACGGGTGAGGTCATCCACTCTTTCGAGAACCAGCACATCAATCCAGTCAGTCTGACAGACCTGGTTGTCATTCTGATTAGCATCATGTACCAACACCCCAAGCCTCTGCACAGTGACTCGTTGCATGCAGAATTtatgctgcaattctacactgcAGAACCTGAACTGACCCCTGTGGATGTGTGTCTAATCTGTTTCACCCAGAGGTTCCTGGCTAAAGAGCTGCCATTGTTACAGGAGGCAGAGACATGCCCTGGTGTGAACGGGGCCTTCATCTTTGTGTGTCGGCAGATGTACAATACATCTGAAGGACTGCAGGTGCTCAGGCCCTATGGCCTGCTTGAGTGCATCGCTGCAGCCTTGAAAAAGATGAGCTCCCTGTCAGAAAGAGATCCCACCCCGGTTCCCAGAGCCATCCTTTCTACATCCTCTCAGGAGCTGGAGAATATGTTCGTTTTGTTAGTGTCTCCCTCTACTTTCCTGAACCTGAACCTTCTGAACTTTTCTGCCACTCCGAAAGGCCTGCTGCTCCTCCAGCATTCTCCAGTTTCACCAAGAAACTACAGGCAAGACCATGTGACAAGTTTGGCTACGGTGTGATGGTGACACAGGTAGCAGCAACAACCCCTGGTGTGGTGGCATTACACAGCTCAGTTTTCGTGCAGGCCTTAGTGGTGGAGCTGTGGTCGGTTCTGGAGTGtgggagagaggatgtgagggtCGTTCACCCCAAGTCCACCCGAATGGACTTCATTGACAGCAGCTGTGTGAAGATTACTAAGTGTGTGATGCTGCAACCTAGACTCCCTCCTGCATCTGAAGTCACAGTACAACATTTACGACATGTTGTTGCAATGTCAGAAGGACAACATCACCGATACATTGTCTGGTGAAGTGTATTTGAAAAGCTGTTTGTTTTCCTGTGCCTCATAATGTTATGACAGGCTGTGGTTCCACCGGTAGTCTAATCACGACAAAATGAGAAATTGATCATTTGCCTTGTCACAGTAAAATGAAATAAAGCGTAAACAAAAGGCCATTTCCAAAAGTGTCTTTTGAATGCCTCCATAATGGATATTGTGACTGGTCATGAATTGAAATGCTGTGAATTGTCTGGTCACGAAATAAATGTGCCTGCATGCACGGCAGTTTTGTTTATGAATTAGAGATCACCTAATTTCTCCTCCCATTTTTGTATCCCCTTTCCCATCTTCATCATTGATGGTCTGTTGAGAGGAACCACATCCTGGTGCGTATGAGTGCAATTGGAGGACTATCGGAGAGGAGACTTCCCCCTAGGGCCCTCCAGAAGACTCTGAGATAAGTGCCTTCCTGGCCTCCACCAAGGACACAGAGAAGGATGGGAGCTGGATGGATACCTGTAGAAGACAATACTGTAAAGTCATGACCACCAAGTCCAACATTGTCTCAGCAAATGGGGGTGATATATTATGATGTTATGtagataaaaacatttttaaagatATTACTGGTCAGGTTATtactggtcaggtcacatggtcagagCGGAAAAAAAATGATTTTGAATAGTTTATCAATAAAACCTGGGAATCCATGTTTCAATGTTCTTGCCATTCCAATATGCTACAATCCACACTGTATTTGAGAATTATAGCGCTGTTGGGTTATAACTCATCTGTTTTATATTCAAACtacagacagggaccagagtttGTTAACATTTGATAGTCCATTACATTCCCATGAATAAATGGATGATACATTTGTCAGTGGATGAAATGATAGGCCCATATTGGGTTTGCTGCTAGACTACTATATAATGAAGAACCAATATCTTTCTGCCTACAACTGCAAATGTATAGATGATCACTTTGCCTGGGTAACAGTAAATGACGGTAAAGATGACTAATTTACCCACATAAGATTTTAATTTACTgtaacatgtactgtactgttgcACTCTCTGAGGGTGTTTATGTCATTGATTGGTTGCTATTCATGTCATTGTGTGTTCAATTGCTTCCTCTGAATGTCACTTCAAAGAGTTCCATTCTGAGTTATTGGTTGTGAAGGGATTGCGGTGTACAGAGTAAGAGACTTCCTGATTGCTTATTTCATTCAGAGACAAATAAGCACCCAGGACGAAGGCTTTTGATGTATCTTAGAAATAAGAAAAAATGTCTACACAGAGCTTCCTTTCTTTATATAATAGATAAACAAGATGCTTGATTACCTTACTATTTTCCCTGCTGTGTGTATAATAAAGGCAGCACAATTTGTACTTGCCTGATGTAGCATTGAAGATAAATGGCTTTACCAAGGCCTCTGTGATGTTCCTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU778641 lncRNA upstream 4356 20649054 ~ 20650803 (+) True G683766
TU778613 lncRNA upstream 20763 20633481 ~ 20634396 (+) True G683759
TU778553 lncRNA upstream 68341 20586607 ~ 20586818 (+) True G683700
TU778524 lncRNA upstream 91369 20563487 ~ 20563790 (+) True G683671
TU778484 lncRNA upstream 124084 20530859 ~ 20531075 (+) True G683633
TU778658 lncRNA downstream 3911 20686910 ~ 20687208 (+) True G683783
TU778714 lncRNA downstream 11478 20694477 ~ 20694735 (+) True G683828
TU778735 lncRNA downstream 25834 20708833 ~ 20709047 (+) True G683849
TU778736 lncRNA downstream 30337 20713336 ~ 20713774 (+) True G683850
TU778771 lncRNA downstream 51709 20734708 ~ 20734910 (+) True G683885
XM_021611918.2 mRNA upstream 17366 20635405 ~ 20637793 (+) True LOC110529577
XM_021611912.2 mRNA upstream 177712 20471157 ~ 20477447 (+) True LOC110529573
XM_036984995.1 mRNA upstream 275806 20294640 ~ 20379353 (+) False LOC110529565
XM_021611921.2 mRNA downstream 142515 20825514 ~ 20992358 (+) True LOC110529582
XM_036985002.1 mRNA downstream 327322 21010321 ~ 21116297 (+) False LOC110529583
XM_036985008.1 mRNA downstream 327332 21010331 ~ 21111196 (+) False LOC110529583
XM_036985006.1 mRNA downstream 327332 21010331 ~ 21116297 (+) False LOC110529583
XM_036985003.1 mRNA downstream 327333 21010332 ~ 21116297 (+) False LOC110529583
TU778611 other upstream 22260 20626950 ~ 20632899 (+) True G683757
TU778522 other upstream 91725 20562875 ~ 20563434 (+) True G683669
TU777286 other upstream 925488 19728833 ~ 19729671 (+) True G682611
TU776513 other upstream 1489519 19163936 ~ 19165640 (+) True G681909
TU773135 other upstream 3760324 16893159 ~ 16894835 (+) True LOC110529505
TU778731 other downstream 24059 20707058 ~ 20707371 (+) True G683845
TU779216 other downstream 394071 21077070 ~ 21078871 (+) False G684314
TU779504 other downstream 736349 21419348 ~ 21424392 (+) False LOC110529590
TU779505 other downstream 736349 21419348 ~ 21422800 (+) False LOC110529590
TU779521 other downstream 736349 21419348 ~ 21424392 (+) False LOC110529590

Expression Profile