RNA id: XM_021611921.2


Basic Information

Item Value
RNA id XM_021611921.2
length 5336
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110529582
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20825514 ~ 20992358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACTACATGTGTCTTTATTTGTGAGTGAACAATTCCGTTTGTACAAGACATTAAAACAAGTGTGTCACCTTCGGATCCGGAAAACACGCCCACAATTGCTAAATGTACGCGCAGAGAAAAGCCATTGGACAATTAGGGCTGTCAATAGCGCATAGCTGCCATTCTTTCCGTTCTGTCCTGAGCTTGGCGAAGAGTTTGCAGATGTGTTTCAGCATGGgcagttgaaacagcaggacacTGCTCAATAGTGTAACTTTTACAGAATACTAAATGATTAATTTCTGATATACGTATGGGAAATTGATAACTAATATTGTTGCACGGAATCTAAGACTGTGCCGATTTTAGAATTTCattcatttgttttgtcttgaacGACAAGGAAAATGCCAGTAGCAACTCTATTGCCTTTTACAGCTACCCCGAGTAGGAAGTCTGCCAGCCCGACCTCCTTTAGATTGACAGAGAAATTCATTTTGCTATTAGTTTTTAGCGCTTTTATTACGCTTTGTTTCGGGGCAATTTTTTTCCTGCCGGATTCATCGAAGCTACTGAGCGGAGTTTTCTTCCACTCGTCTGCGGTAGAAACCAACACGCGAACAGGTACGGATAGTGATTCAAACGTTGCAGTTGGGACCGAAGAAAAGATATTAACCAAGATTAGAAAGGACCACGAAAAGGCTTTGGTTGAAGCAAAAGACACACTCCAGAAACGACCAGACGAGATAAAGCAAGATATACAAGACGAGAAGGACAAAGTTTTGAAGGAAGGTAAAGGTGGGAAAGATTACAATAACCTGCCAGTCATTGAATATGTTCGGCCACCCGGAGCAACAGGGCACGAGCCCTCCGATCCGGAAACCAAAGAGAGACGAGCAAAAATTAAAGAGATGATGACATTTGCCTGGGACAGTTACAAGCGCTACGCCTGGGGATCTAATGAGCTGAGGCCTGTTTCCAAGCAAGGCCACTCCAGCAATCTGTTTGGGAGCATAAAAGGAGCCACCATCGTGGATGCTCTGGATACCCTGTACATCATGGAGATGTTTGAGGACTTTGACATGGCCACAGAGTGGGTGGAGAAGAACCTGGACTTCAACGTGAATGCTGAGGTCTCTGTCTTTGAAGTGAACATCCGGTTTGTCGGAGGCCTGCTCTCTGCCTATTACCTTTCTGGCAAAGAGGTGTTCAGGAGGAAGGCCATAGAACTGGGAGAGAAGCTGTTGCCTGCATTCAAAACCCCCACAGGCATCCCCTGGGCCCTCCTAAACCTGAAGAGTGGCATCGGGAGGAACTGGCCTTGGGCGTCTGGAGGGAGCAGCATCCTGGCGGAGTACGGCACCCTGCACCTGGAGTTCATGCACCTCTCCAAGCTGTCAGGGAACCCAGCCTTCGCAGAGAAGGTCATGAACATCCGGAAGGTTCTGAATCGCCTTGATAAGCCCCAGGGACTGTACCCCAACTACCTGAACCCTAACAGCGGACAGTGGGGACAACATCATGTGTCAGTGGGCGGCCTGGGAGACAGCTTCTATGAGTACCTCCTCAAGGCCTGGCTGATGTCGGACAAGACGGACGAGGAGGGCAAGAAGCTCTACTACGAAGCTCTGCAGGCCATTGAGACCAGTTTGATAAGAAAGTCCAGTGGGGGACTGACGTACATCGCTGAGTGGAAGGGCGGCCTGCTGGAGCACAAGATGGGTCACCTGACGTGCTTTGCCGGGGGCATGATCGCCCTGGGGGCGGACGGAGCGCCCGAGGACAAAACGGGTCACCAGATGGAGCAGGCCTCAGAGATTGCCCGCACCTGCCACGAGTCCTACGCCCGCACCACCCTGAAGCTGGGCCCAGAGGCGTTCAGGTTTGACGGAGGGGTGGAGGCCATCGCCACGCGACAGAACGAGAAGTACTTCATCCTGAGGCCAGAGGTCATAGAGACCTACATGTACATGTGGAGGTTCACCCACGACCCTAAGTACAGGGAGTGGGGCTGGGAGGCCGTGCAGgcTCTGGAGAAGCACTGTCGTGTGGAGGGGGGCTACAGTGGAGTGCGGGACGTCTACGCCTCCAGCCCCAACCATGATGACGTCCAGCAGAGCTTCTACCTGGCCGAGACACTCAAataccTGTACCTGCTCTTCTCTGATGATGACCATCTTCCCTTGGAGCACTGGGTGTTCAACACCGAGGCCCACCCCCTCCCTGTCATTAGGAAGGAGATGACAGACAAGCCCAGCCAGCTGGAGTAGAGTGGTCCTCCTGGATCACCCCCTGACCCCTCCCACCACCaaactcctctaccccctccccttctgAGCAGTGGGCGGAGCTGTCTCTTACTCCTCCCCCACCATGGGTGGAGCTCACCCAGGCAGGCCGCTTCCCTGGCAGACTGGACTCTCCTGTTTTGGAGTCCCTGACCAGACCAGATGGAACCGGACCGGCTGCCTGCCTCTCCAGAGCCAGACTGCCCCCTACTGGGGACTGGGAGGAACCACCTCATCCAAGAGTTCTCTTGTCATCTTGTAAAGATAGTCTGCATGCTCCCCCCTCCCAGTGCTGTAAATCTACCCTCCTCTGTGAGGAGAACAGGACACTGCGCTGTAAGATTTGCCGTCACTCCAAAAAAAGCCATACTGATTTGAAGAAAGCtttgtcatttattttattttgttctttCCACCATTTGAGgtatgtgtttgtgggtgtgaCTGACAATAGATCAATGTCAATCAACATATCACATTTGTGTCGTTCTTATCGTAAGTATGATTTTAGTCACACTTTAACAATGGACCATTTAGGTGGATTTCTGTTTAAGACCCAGAGCTTGGTTCTCACCTGCTTGATAGTCAAATCTTAACTAGTGCCTTTCAGTCTAATATGGTCTATCAAATAAGCAGTTCAGGCAAATGGCAAGGTTTTTAATTTAAACCGGTAGGTAGGTACCATCATTGTTCAGATGGCATGGTTGATTGAGTGCTTTGTCACCTCCTCTACCACACTGACATCTGGTGTTGAACACCAGTAATACACAGTCAGATGAGTGTAGCAGGTCAACATAGAGTATTAAAGGAGATGAAGTACCTTGATGGGAAAAGACCTGCACTGAGAACAACCTCTGTTTTTAAAGAAGTAGAAATGTTGACTATCTATCTgttcccttcctcctgaagtATGGAACGTGTGGACAGTAGATTCCTTCTACCAACATGTCATCAATTCATTCAGCCTAGTCCCCCACCCCCATCATCATGTTCCTTTGTTTTTTAATTGACAAAGTTGACATgtgctttgtttgtttgtttgttccttTATTACAGGTGGTAGAGACATTAATCTATGTGATGTAAAATAGTTGCTTTGCTGTTAATTTATTCCATAGTACATAGGAAGGAAGGTTTGGCATCAGGCACCTTGGTGGCACTGTGGAGAGAATGGGCCCTGTGTTGTTGTTTAAGTGGATTATTtgggagatgggagggagacagtgtGGGGGAGACAAGGGCAGAATCAGACCAAGAATTTGGGAGTCAATCATATGTAACGAATGCATCGTATGAATGTACCATCAAATGTGAACTGAAGATTATTTTACCTTTTGTTGTTCTAAATTTGTTTGTTGAGATTAATTTTTTGTTCCTTTCTTCTGGACAGCACAAAATGCTGAAACAATGTGTCGTGGTACCCACAGCAATCTATTTAAAGAGGTGGGACATTGAGGTTCCTGCATTATGAGGCATTTACATGACACctcaacattctatggcagccatgttagttccCCATTTATGTTACATAGGGAATATTTAAATAATGATATGTAACGGAATGTCTAGGATAAGAAATATTCCAAATTCGTAGTTTACCCAAATCTCTAAAATATATGGCTCTGGCGGTACCAATCAGATGAAGCTGTTAGTCAGTTCAGAAGAAGAGGAAGCTGTTAGTCAGTTCAGAAGAAGAGGAAGCTGTTAGTCAGTTCAGAAGAAGAGGAAGCTGTTAGTCAGTTCAGAAGAAGAGGAAGCACAAAGAAGAGTTGTTTAGTTGTGTTGAAATGCAATGAGAAGATGCAAGGAAGGTTGTATGTCCACTACACTGATGGCATACACTCACATATGAACATACATACATGCTGAATACTGTATAAAGACAAGATGATGAATACATCGAAGTGGTCACACTGTACATGCATATCGTATTCAgaagtacacactacacactcacacGCTCCAACACACTTATGAACATGGAAGTTTATGGACACTCAGAAATTGATTTTCAGGTGACCACAGGACCCATCAAACCACTCTGTTGTCTCATCATAAAGGCAAAGTTAAAGGGGAGCGGATTTGTATCAAACTAGGTCTCGTGGTCCCGTTCTTCTGTAGTGTACATCTTTCACAGTCAGGGGCCACTgatgtccacatacactacatctTATTGGGAAATAAACGGGGTAGGATCAAGAGGTCTTGAAGAAGGGCCTTCGTCATGGTTGAAGTCATTTTCTTACATTAGAGGATAGAACAGACAAGAGGTTTGAGAAGCTGATAACAGCCCACTACTGGAGCCAAACTCTGCTTTCTACAGCATTCTttaagacataataataataatacctgtTTACCTTACTGGAGGAAGCAATGTTAATGAGAGAAACTGTGATATCCATGTAGGCTGACATCCCTACTACCTAGTTCAGTTCGGTAGCCAATCCGGCTCCAGGGAAGAGCGTCACTATACACTGTGATACACTGTAGATATGAAATTGCTGCATTCACCATCTCTGCACTGTCGGAGAGCCTAAGTGGTTCTCCTGACTGTTGCAGCTTTAGGGAGCAGCAGAGATTACTCGTAGTGATACTGAGAAACTTCAAGTCGCTGTAAAATGCTAACACATGACATATGAAGCATTTCCTTTCGTCGTTGTTTCAGATATGCAGACTAGAAGACGTGCTGTTCATTTCAAATTGACTTTGTGATTGAATATTGTGTTGATGATCTCTCACATTACAATGCCTTTTATTTGTGAATCTCTTAATGGTTTTGTGAAACAACCTCAAATGTAAATGGTACAATAATGCTGATAATCATTCCATTGCACATAGTTTATTTTGGTTTATATGCAAGTTTAATTTTGTGAGGAATTGTTCTGttcagtttttttgtgtgtggtttGTTATTGAAATGTAAATATTCCATTCTGGCAAATATGCCATTATACATTTATATAAATCTTATGAGCTTAAATGATATTAAATGAGCAGCAAAATGTTTCATAAACTATATTTGTTACACTTCTATTGTGAATAAAAACAATCTTTAATATCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K01230 MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU778909 lncRNA upstream 923 20824370 ~ 20824591 (+) True G684021
TU778881 lncRNA upstream 19371 20805837 ~ 20806143 (+) True G683994
TU778879 lncRNA upstream 21200 20803967 ~ 20804314 (+) True G683992
TU778877 lncRNA upstream 22412 20802260 ~ 20803102 (+) True G683990
TU778819 lncRNA upstream 57484 20767760 ~ 20768030 (+) True G683933
TU779148 lncRNA downstream 2090 20994448 ~ 20994661 (+) True G684254
TU779161 lncRNA downstream 16227 21008585 ~ 21008850 (+) True G684267
TU779163 lncRNA downstream 16599 21008957 ~ 21009317 (+) True G684269
TU779214 lncRNA downstream 84712 21077070 ~ 21077593 (+) False G684314
TU779215 lncRNA downstream 84712 21077070 ~ 21077791 (+) False G684314
LOC110529580 mRNA upstream 142515 20655159 ~ 20682999 (+) False LOC110529580
XM_021611918.2 mRNA upstream 187721 20635405 ~ 20637793 (+) True LOC110529577
XM_021611912.2 mRNA upstream 348067 20471157 ~ 20477447 (+) True LOC110529573
XM_036984997.1 mRNA upstream 446161 20294642 ~ 20379353 (+) False LOC110529565
XM_036985002.1 mRNA downstream 17963 21010321 ~ 21116297 (+) False LOC110529583
XM_036985008.1 mRNA downstream 17973 21010331 ~ 21111196 (+) False LOC110529583
XM_036985006.1 mRNA downstream 17973 21010331 ~ 21116297 (+) False LOC110529583
XM_036985003.1 mRNA downstream 17974 21010332 ~ 21116297 (+) False LOC110529583
XM_036985004.1 mRNA downstream 17974 21010332 ~ 21116297 (+) False LOC110529583
TU778731 other upstream 118143 20707058 ~ 20707371 (+) True G683845
TU778611 other upstream 192615 20626950 ~ 20632899 (+) True G683757
TU778522 other upstream 262080 20562875 ~ 20563434 (+) True G683669
TU777286 other upstream 1095843 19728833 ~ 19729671 (+) True G682611
TU776513 other upstream 1659874 19163936 ~ 19165640 (+) True G681909
TU779216 other downstream 84712 21077070 ~ 21078871 (+) False G684314
TU779504 other downstream 426990 21419348 ~ 21424392 (+) False LOC110529590
TU779505 other downstream 426990 21419348 ~ 21422800 (+) False LOC110529590
TU779521 other downstream 426990 21419348 ~ 21424392 (+) False LOC110529590
TU779524 other downstream 426990 21419348 ~ 21424564 (+) False LOC110529590

Expression Profile