RNA id: XM_021611924.2


Basic Information

Item Value
RNA id XM_021611924.2
length 5118
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110529585
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21143069 ~ 21230110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAGCTGTGGCACGCATTCAGTGAGATCACATCCTTCCATGCATTGCTGTTGCCATCGATTTAGTAGTAGTTAGTTCTTCAGTCAACTTTACCCAGATTTTCGACTTATGGAGCTCGTTTTGGGCAGAAGACATGTTATAAATAACCGTTAAATTTCAGTTTTAAAGCTATGATTGTCCTTTCGCGCAATGTAATCATGGCAAGTTCTTGAGGAATTCTCTCCACCTTTTGTTTGATCACGTTTTGCTCTACCCTCGGAGTTTCACTGCGATCGGGCGCATACAATCAGTCATAATGTGGGGGAGAAACGAATTTGAGGATGGATTTGATACTTTTAAAACAGGTTCCAGCACCAGCTCTCCTGGATGGGTCCCGGGGTGTGAGTCGCCATGGCAGGGTACCTCCTCGGTCCCCGGTAACAGTAACCGAGGACGACGCCACAGCACGGCCTCCGACAGTGGTGACACGGGTATCGGCACGTCCTGCTCCGACAGTGCGGAAGACCAATCTGGCTCCAGCACCACACTGTCCTTCCAGCCACTGCGCTCCCAGGGTGCCCTCCCCACGGCCCACGTCATGCCCTCGCCCTCTTCCGGCTCCAAGCTCAGCACGGTTCTCTGCCCTGGGGGCAGCCCCTGGTCCTCCTGCCAGCTGCCCTCGCCCCTCGACAGCCCCCTGGATATGAAGGACCCCCGGCCCGTCAGCCCCTGGTCCTCCTGCCAGCTGCCCTCGCCCCTCGACAGCCCCCTGGATATGAAGGACCCCCGGCCCGTCCGACGCTGGTCCTCCCTCACCCGCCTCAGCGTCCAGGAGAAGTCCAGCCCCGTGGGACGGGCAGCATACCGCCCTGACCCCCACGGCTCCCTGGACAGAGGCATGCTCTACGGTTACAGGCAGGACCCTCTGCGCCCCACAGAACCCTACCTGTCCCAAGGGCTCCACCTGCGCTCCCCAGGGGCTGAGGCCCGGTACAAATACCCCCTAAGTACTAAGACAGACTCTCACTCGGCCTGCTCATCCCCGCTCAAACCCAACACCTTAGACCTGACCTACAGTGCCTTACCGGAGACCAAGCACCCTGGCGTCGGGCTGACGGTACCCAGCCAGAGGGGCCTACCACTGGGCCACCAGGCAGTAGGAGGGTCCCCCATCCAGCCGGCGGTGAGGACCCAGATGTGGCTGAGTGAGCAGATGGAGTACCGGCCTCCCGGACCTGGGACAGAGCTATGTGGGGGCTTGTCGGCCTggcaacaggagcagcagcagagagagaggttgcGTCAGGAGGCCGAGCTCAaccagAAGCTGGGCGGAGCCTCCCTTCCTGTGAACACTCTGGTGAAGATCAAAGAGGGCCTGCTGCgacagagagagctggagatTGACAGACAAAAGCAGCAGATCCTACAGCTCCATGCCCGGATCAGGGACAATGAGCTGAGAGCGCAACAGGTCCTCCAGAGCCAGAAGGGGCGCTGTGACGACCCATATCTACTTAACGCTAAGGAGTCTCCATATGACAGTCCTGTAGCACAGCCCCACCCCCAGCTGCAGGTCCCAGATAGGGTGAGTCCTCTGTGCTGTGACAACGGGGCGCTGGGCCATAAGCTGGCCGCTGCAGAGCTGGAGGTCATCCACCTCAACGAGTTCCTCAAACAGAACACCCAGAAATACACAGAGGACATCAAGAAGCTGGAGGAGAAGATGAAGACGCGCGACCGCTACATCAGCAGCCTGAAGAAGAAGTGTCTGAGGGAGAGTGAGCAGAACAAGGAAAAGCAGCAGAGGATAGAGACCCTGGAGAAGTACCTAGCTGACCTGCCCTCGCTCGATGAGGTCCAGACCCAAGCCCAGCAGCTGGAGGACGGTCAGGGGAAGGCCCAGGGTCTGCAGGACACAGTGGCTTGTCTGGAGAAGAGGCTGGAGGAGGGCTGCGCCGTGCTGCAGGCGAAGGAGGACCTGATTGAGATCCAGTGCAAGCGGGAGAAGGAGCTGGTGGCTGCTGTACAGAGCCTGCAGGAGAAGGTGGAGCAGTGTCTTGAGGACGGGGTCCGGCTCCCCATGCTGGACCTGAAGGAGCTGGAGGTAGAGAACGCACGGTTACAGGAGCAGCAAGCCACCACCACCGAGCTGATAGACAATCAGAAGAACCAGATTGAAAAACTCACCCTTGAGCTGACGGCTGTAGAGCAGAGGCTGCAGAAGGAGCGATGTCTCTCCCAAGAGCTCCAGCAACAGCTGCAGGGCGAGGACCTGGCTTCACTCGCTGACACCCTCCATCAGAACCAAAGGCAGGTGGAGGATGGCGTGGTGATTCAGCAGGGCTGCGGGGGCCAGGAGCCAGATGCAGGGCCCCTGCTGAAGGAGATGTCCTTTTGTCTGCTTGACCTCAAGGCCCTCTGTAGTATCCTTACCCAGAGGGCCCAGGGCAAGGAACCCAACCTGGCACTGCTACTGGGCATCAAATCGATGAGCATGTCAGGGGAGGAGAAGGACAACTCTCTGGTGGAGGACAGCTTGCGGGCCAAGCTGCTGGAGGTAGGCCAGCTTAGGAAGGACATTGAGGACCTGCGCACCGCCATCTCTGACCGCTACGCACAGGACATGGGCGAAAACTGTGTGACGCAATGACACACCCGCAATGAGGGAGCACTGATGCCCAGCGACGGCGTGCCCACTCACCAAGGCTTGTGTCACAGCCAGTGAGGGTAGGAAAAAAATCCTGATTGGAGGAAAACCAGGAAGAACAGTGTTAAAAATGGAATAAGAAACTAGGTACTGTCAATGCTGTATTTTATTTAGTTTTACGTGATGGAGGTATCTAGCTCCAGCTTTCTGAATGTAGGATCAAGCTGTGAATCAAGTTTACAAGTTTACTTAAAATAGGATGTTTTGATTTTTCAAATGTCAATTGCGCTTCCTGTGTAATAGAATGAATTCCTGCATGATCATGTACATTGCTTCATGCACAGAGACTTATACTCCCTTCTGTGAGGGCAGGGCCTCCAGGTATAAGTGTTTGGCCCCTCCCACACAATCTCACCGGCCAGTAGGAAACTGACTCACTGCTGCTCTGTCAAGTGCCTCTGTGTGTGACAGCTTCTCCACGAATCAGCTGTCCTCTTCCTAAGTTGTCTCCAATGGCAACCCATAGTGCTCCTCTCACGTCACCCCGTGTGTTATCCAAAGACAAACTCCCCAAACTCTCAGCAGCTGCCCATAGTAGAGACTGCCTAGTGGCACTTGCTCCACAACATGCCACACAAACTGGCCAACCAAGAGGCTGCTTCTGTTCCTTTTCAGCATTTCCGGTTCCTTGTTATGGGTGTTTCTTCTGTGTACAAGTAGTTCGCTATTTGGGATATGAATGGTTTTCAATAGAAGATTTCAGTGATGTGGATCACCCCAAACTGGTTATTTAGATATTTTTAATGAAAAAGCACAGCAACCCCTTTCATATTATTTGCTGTTGTGTTGAACATAATAGCATCAGGTAATATTCAGGTGTTTTTCTAACAATTAAATTCAGGAATTGTTTTTACAAGTTCAGATTGACTAGTAAGATCAGGGCTTAATACTGCCCCATTATTTAAATGCATTTACATAGGCAGCACAATTCCGAtcatttttccactaattggtgaGCTGATTAGTCAAAAGAtcaattattgaaaaaaaaatttttaaaaaaaaataataattcaggctgcttgtgtaaacacagccatagaCACCATTTGATTGAGACTAAAACTAATGCAAAACCACCACAGCAGCACTTCTACAGTATAGGCCCATATTACCTACTGGGACTTGACTCATTTGTATTAATCCATTGTCAATATAGGCACCAGTTACACATTGAGTTGACAGATATTCCTCCAACCTCAACCACAGAGGGGTCTCTAGATTAATGCATCCATGGAGTAATCGTTGGTTCACATTCTTCTGTTTTACTTTGATTACTGTTCCCACTATTTGTCACAGGAACACTCTTGCTTCATCTCAAACTATTTGGAATGTGAATTTTAGCGAGCCGGTCATGACAACCAACACATTACTGTTTCCTATAATGCAGGGTTTCAAACTGTCCTCGGGGACCCCCCAGTTTGTTTTCACCTAACgcgacacagctgattcaaattatcaaGCTTGATTTGAATCAGCTGGTGCAAAACAACCTGCTATAAAGTGTTATACATTTTTACAGATATTGTAATTTATCCTGGTGACaagtggttaaaaaaaaaatggtaatcAGTTTAGAGCCAAGTATATTTTGCATGTCTCAAATTAGACTAATGTAGGTTGTAGAGTATTCTATTATACTGTTGTATTACCAATCTTAGAAAGGAAACATTGGCTATGTAAAATGTTTTGGCAGGTTACGATAAAGAACAAAGGTCGACTCGGGCCTAGATTCAAACCATACCACTGAAGAGCGGCATTgaaaggtcatttccgattggGCCGACATGCAACTTTTACCATGATTACAGTCTGAGAAACTTGCCTTTAAAAATTGCACAGGTCTTCAGCAATATAGATTGAATCTAGTCCTAAGCCTCACATGGAAACTAATATGCAATGTCACATGCACCAGCTAACACCCATTCAGTAGCAGATCTGAAATGTTCTTGTTCTTCTGTGCCTTTTAATCTATGCAGCAGATAAGAGCTCCTGTTTCTCCCTATTGACAGGGTCTGGAGACAACTATTCTGCATCTTGTAAATAAGAGGCTACCCCTCACAATTATGCTAAGCCATAGCCACAAAATAAATATAGCCACTCAGGTAAATTAAGGCCATAGCAGGCTCTTGTGAAACCTGAAGAATGTACTCTGATGCACAGCATCCATTGTGAGGTGTAGGTCTGTGGGAGTATAGTGCTCATGTAGAGGGAAACAGGTGTGGTTGTCATGGCTGTCTGCACTGGACTAGGAGCCACTGGTTGGCTTTCCTGTACATAGGAATTTCTGTTTGTTACACTTCGTTTTGCAGCTAGATTTTATGAATGCCAAAACGTTTATTTATATATGTTCGtaaaagtatttttccatttaagGCTTGATTGTCATTTGTACAGACTgcaaataaaatatttttctATAACAGTT

Function

GO: NA

KEGG:

id description
K16766 CEP85; centrosomal protein CEP85

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU779314 lncRNA upstream 31419 21122138 ~ 21122872 (+) True G684400
TU779217 lncRNA upstream 76418 21077070 ~ 21077873 (+) True G684314
TU779215 lncRNA upstream 76500 21077070 ~ 21077791 (+) False G684314
TU779214 lncRNA upstream 76698 21077070 ~ 21077593 (+) False G684314
TU779163 lncRNA upstream 144974 21008957 ~ 21009317 (+) True G684269
TU779471 lncRNA downstream 157893 21388003 ~ 21388217 (+) True G684547
TU779473 lncRNA downstream 159761 21389871 ~ 21392904 (+) False G684548
TU779477 lncRNA downstream 159761 21389871 ~ 21392904 (+) True G684548
TU779487 lncRNA downstream 172840 21402950 ~ 21403576 (+) True G684554
TU779501 lncRNA downstream 189238 21419348 ~ 21424564 (+) False LOC110529590
XM_021611923.2 mRNA upstream 17466 21117379 ~ 21136825 (+) True mcm9
XM_036985010.1 mRNA upstream 37994 21010333 ~ 21116297 (+) False LOC110529583
XM_036985013.1 mRNA downstream 176082 21406192 ~ 21422857 (+) False LOC110529590
XM_036985014.1 mRNA downstream 176082 21406192 ~ 21422857 (+) False LOC110529590
XM_021614352.2 mRNA downstream 483050 21713160 ~ 21722182 (+) True LOC110531076
XM_021611947.2 mRNA downstream 541953 21772063 ~ 21774545 (+) True LOC110529595
XM_021611949.2 mRNA downstream 549760 21779870 ~ 21782714 (+) True LOC110529596
TU779216 other upstream 75420 21077070 ~ 21078871 (+) False G684314
TU778731 other upstream 446920 20707058 ~ 20707371 (+) True G683845
TU778611 other upstream 521392 20626950 ~ 20632899 (+) True G683757
TU778522 other upstream 590857 20562875 ~ 20563434 (+) True G683669
TU777286 other upstream 1424620 19728833 ~ 19729671 (+) True G682611
TU779504 other downstream 189238 21419348 ~ 21424392 (+) False LOC110529590
TU779505 other downstream 189238 21419348 ~ 21422800 (+) False LOC110529590
TU779521 other downstream 189238 21419348 ~ 21424392 (+) False LOC110529590
TU779524 other downstream 189238 21419348 ~ 21424564 (+) False LOC110529590
TU779525 other downstream 189238 21419348 ~ 21424564 (+) False LOC110529590

Expression Profile