RNA id: XR_005052832.1



Basic Information


Item Value
RNA id XR_005052832.1
length 1584
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110529586
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21187530 ~ 21197198 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctctactctcCGCCCATCTGATTTTCCTCCCATAAACTAGGTGACATAGCGTAGAGAGCTGCCAGAGAACCTTCTCGCCTGTTGGACTCACagcctttctcccagcctcctcACCAGACTGCCTGTGACCCCCAGAGCAGAATCtacccatccatctatccattaATCCATCCACCCCTCTGGAGCAGACCTATGTAGCTGAACCAACAACCACCAGAGCACAGCGAGGGCTAAGCAGGGGGGTGTAACGATCCATCAAACCATCTCCATCACTGGTCTTCCTGAGGACACCTCCAGAATTACCCTCTTAACTGAAGAGCTTTGCCCAGAATTGATCACTCTGCCTGGGGCATTTGCAGCCTCAACCCAGCCTCTCCATGTCGAGTGAAACCATGGACCTGGTCAACAACCGCGGTCTCAACCTGATGCTCAACTTCCTCCTCATCGTCATCATGCTGCTCCTAATGCTTGTCCTGGTCAAACTCATGTAACCTCTGACATACAGTATGACCTCATGGCATAGGTTGAGCAATTCCAGTCCCCAAGGGCCACAGGGTCTGATGGGAGTCCCTCTACCTCTGATTTGATCATATAAATACACCACGACTTCAACTAATTATTATTCAACAGGTCACATCAAAAATCACTGAATAAAAGCCATTGAACCTGTTGGGAGGAGAACTAAACATTGTGAGCTtttggagagtagaaaagagtTTGGGATTCCATGAGATCGTTACATGGGATGGCAAGATTCAAAATATCAATTAACAGGAGGATGAAACTCCACCCACCGATGGAAAAGAAATGAAATAACGTTGACATGGCATGATCAATAGAACGCCCTCCTTTACGTTTAGTTTACCCCCCTCTAGTGGTAGAATCACCAAACTGCACCACATCTACTTCTGGCCAGGGCACTGAGCACAGAGATAAATCCATGCTCTCTGATCCTCATGCTAGAGTTGTGGTTGATATGAGCCATAAGATAACAATCATTTCAAAGCTCTAACACTCACAGTCACCGACTATTCTAAGCTATTAGGACCAAAGCACATGTTACAAATGACAACTGAAATGTAACTGAAAACGATTAAAGCCATAAACCGACCGTCCTTTTCCGTGTGATATGAGTTCTTTATGTAACTGTTGAGTGAAGCCCAGGGTCCTTCCCTTTGGAGACTCGGGTTGCTCTTGAACTAGTAGCTGATAAGTACAACAGATACTTGGCTCAATAAACATGGGTACGCACAGCTTAAGCCTGTAaacctttcagtgaaatatgtAATATTGTTACTACAATATCCTAACATAACTGTGTGCTGTAGTGAAAATGTTTTCGTGttcagtagtagtagttgattTGTTTTGGCAGAGTAATGAATAGCTACAGAGTAAATAGAGCAAACACCTCCAGCTAAACACAGTGAAGCTCACTACAGTGTGAAGAAACATGCATGACCACTGCAGAACTgctgtagtgttgtctgtctgcAGGCGCTGGCTCCACTTTACACTTTCTTATGTCGCACAGCATTTTCTAAAGAATGTTTAACAATAAAGATAAAATACACAAACTATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU779162 lncRNA downstream 178905 21008334 ~ 21008625 (-) True G684268
TU779152 lncRNA downstream 188733 20998486 ~ 20998797 (-) True G684258
TU779141 lncRNA downstream 195241 20990098 ~ 20992289 (-) True G684247
TU778903 lncRNA downstream 366143 20821152 ~ 20821387 (-) True G684015
TU778876 lncRNA downstream 386629 20800625 ~ 20800901 (-) True G683989
TU779705 lncRNA upstream 79005 21276176 ~ 21276701 (-) True G684714
TU779680 lncRNA upstream 90581 21287752 ~ 21291905 (-) True G684690
TU779803 lncRNA upstream 186747 21383918 ~ 21384286 (-) True G684789
TU779805 lncRNA upstream 189959 21387130 ~ 21387516 (-) True G684791
TU779806 lncRNA upstream 190645 21387816 ~ 21388049 (-) True G684792
LOC118965500 mRNA downstream 534986 20650227 ~ 20652544 (-) True LOC118965500
LOC118965600 mRNA downstream 540001 20644656 ~ 20647529 (-) True LOC118965600
XM_021611920.2 mRNA downstream 543332 20642316 ~ 20644198 (-) True LOC110529578
XM_021611917.2 mRNA downstream 546115 20637866 ~ 20641415 (-) True LOC110529576
XM_021611914.2 mRNA downstream 552301 20633327 ~ 20635229 (-) True LOC110529575
NM_001197208.2 mRNA upstream 34121 21231292 ~ 21241150 (-) True si:dkeyp-114g9.1
XM_021611930.2 mRNA upstream 49981 21247152 ~ 21385603 (-) True LOC110529587
XM_021611931.2 mRNA upstream 195167 21392338 ~ 21401110 (-) True LOC110529588
XM_021611932.2 mRNA upstream 204772 21401943 ~ 21406071 (-) False LOC110529589
XM_021611935.2 mRNA upstream 228448 21425619 ~ 21469294 (-) True LOC110529592
TU776244 other downstream 2395393 18791230 ~ 18792137 (-) True G681659
TU773944 other downstream 4073002 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 4557271 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 4557271 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 4754516 16432621 ~ 16433014 (-) True G679087
TU779858 other upstream 281595 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 723256 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 723256 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 961859 22159030 ~ 22161042 (-) False G685953
TU783285 other upstream 2419736 23616907 ~ 23621246 (-) True LOC110529643

Expression Profile


XR_005052832.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 600.
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XR_005052832.1 Expression in each Bioproject

Bar chart with 15 bars.
XR_005052832.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.