RNA id: XM_021611931.2


Basic Information

Item Value
RNA id XM_021611931.2
length 2513
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110529588
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21392338 ~ 21401110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGCGCAcccggctaactagctagccatttcacaccggttacatagGGATCAgatctgttttatttttttaacaaaaaGGTTGTttgatttattgtatttttttggtAATTTGTTCAGTTTTGGGGGTAGGGAATCCTGTTTCCATCCGGCATAATAGGTGGCGGGATGCACATTAAATTGTGTGATCGACCCTGCCGCGGATATCGACTCTGCCgcttgagcatgcttttgcggcacagtcgataacgcgctggacttcgggctagaaggtcgagggatCGAGACTTGCTCTCTGCCTGTCTCATTTacatagaaaaaaaaaacaaccatACGTGGATCTCGCGTGATTTCATATTTGCTGAATCGTCCAATCAGTGAGCTACGTGTATCTTTCGGGTTCAGAGGGTAAAGGTTGTATGAAGATGGCAGCCGTGTAAACTGAGGCGTTGGCAGTAAACTAAATGGCTCACAGGAGTAGATTAGTGTGCATCCATATCTAGACTTGAAATGCAGAGCTCGATAGATACCTGATAATTATTCAATTTCGAGATTTTGTCGAGGAGGGCGGCATAATGGCAATAGTGTACGAGTTCGTGTGGCAGGTTCTGCATGTCCTTCTCCACATTCATAGAACGCTTATCACTTGGTTCCGAATCCGACTTCGGAATTGGAATGGGCGACTGTGGTCACGAGCCTTAACAGCGCTTATTGTGCCGATGGCTCTCTCGTTTCCTAACCAAAAAAATATTGTCCCAGCACCCGGTAAACGCGTTGGTCGTCGGTATCGCTGGGGGGCGGATGGGAAATCTCTGGAGAAGCTGCCTGACCATATCGGTTTATTGATAGCGGAAGAGGAGCCACGGTACACAGATATAGCCAACCTTGTGGTGTGGTGCATGGCAGTCGGCATATCTTATGTCAGTGTATACGATAATTACGGTGTCTTCAGGAGGAACAACTCAAGGCTGATGGATGAGATCctgaagcagcagcaggagctcCTAGATCTAGAAGGCTCCAAGCAGCTCTGTGTGGAGTTCCTTAACAATGGCACTGACAAACAGGACCAACAAGTGCTGTCGTGTCAGTCTGTATTGAAGGTGCTGTCTCCAGACGACGGGAAGCTGAGGATCGTGCAGGCAGCACAGCAGCTGTGTAGAGCTGTGGAGCAGAGGGAAAAGACATCCGAAGACATTAATGTCACTGTGTTGGACTCCCTACTCAGAGAGTCGAAGAGTACACCAGATCCAGACCTGGTTCTGAAGTTCGGCCCAGTAGAAAGCACCCTGGGATTCCTGCCCTGGCACATCAGACTGACAGAGTTCATcTCCTTACCCTCCCATGTAGGCGTCTCCTATGAGGACTTATTCAGCGCCTTGCAGCGCTACGCCTCCTGTGAGCAGCGGCTGGGGAAGTGAGTGATTGGCCCCGCCCCTCCAGAGGAAGGGGAAAGACAAGGGTGTGGGGTAGGGGTCCGCCCTAGCCCCTCTTCCTCCTGGGTCTCTGTTTGCAGTACAGGCACTAGAGAACaagcagccagccagacagcgtACTGCCACATCACATCGAATCTCACCTCCAACCCCGCTCACTCGGACTCACTACTTGGACTCACTACTCGGACTCACTGCTCCTCCGCAACGTGAAAGGGTCACCAGGCTGCCTCTGTGAGGCATGCTGGGTAGTACGGACCCTGACAAGGTAATGGCACGCACTGAACATCAGCGGGCTTGGAAGAGATCGGCCAATGCCCCCGCATCAGCTGTATTTAACGAGGAACCAACATTACCTGAAGGACATTGTTAGCCGTATGGTGTAAATCTAGTGTTGCTttgcttctctctcgctctctctctgtttgctgTAGATCCTGTTGTGCCCCTGAGGTATGAATGAGGATAATGGATCAAGCTTTCTGCTGCTCTGGAAGGGAGCGGTGTGTTGTGAGGAATGTGCCAGGCAGAAAGTTTAATGCTAAACAACAACCTTGCTCTTCaggtctctccatctctgtaaaGGACTGCATGGAGGACCTTGGGGCTTTTCTGGAAATTATACTTCATATAAGTGTGCTTCAAATGTAGCGCTTGATCAATATGGTACGGGAGGATGTGGAACGAGAGCTCTGTGATACGTGACTATACTCTGCATGTTAAGGATGTCTGACTACATGGTTGTGCTGTGTCTTCATTCAGAGTTACTATTGgtggactgtgtgtgtctgcttttgtacatgtgtgaaactcAGCCAGCAAGTTACATTAAACCTACACAAAATCCAATCTTTGCAATCAATCAGGATGAAAAATAAAGCAGTTGTCTGTATACAATTTCCCCCATGACCAACACTATTTTATTTGGTGTTGAATTACTAGGTTCTCACCCCGTTCTCCATAATATTAAGATTTTTGCATGTTGAGCCCCTTAATCCTCAATGCTGCTGTCTGTTGTTGTTAATCCATGTGAAGATTGACTAATTCTTGTATTAAAGTGTTTTGCTATTTCTTTCAT

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0006486 protein glycosylation biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups molecular_function

KEGG:

id description
K19177 NUS1; dehydrodolichyl diphosphate syntase complex subunit NUS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU779806 lncRNA downstream 4289 21387816 ~ 21388049 (-) True G684792
TU779805 lncRNA downstream 4822 21387130 ~ 21387516 (-) True G684791
TU779803 lncRNA downstream 8052 21383918 ~ 21384286 (-) True G684789
TU779680 lncRNA downstream 100433 21287752 ~ 21291905 (-) True G684690
TU779705 lncRNA downstream 115637 21276176 ~ 21276701 (-) True G684714
TU779810 lncRNA upstream 1930 21403040 ~ 21403274 (-) True LOC110529589
TU779778 lncRNA upstream 20684 21421794 ~ 21424438 (-) False G684767
TU779779 lncRNA upstream 21812 21422922 ~ 21424539 (-) True G684767
TU779851 lncRNA upstream 70505 21471615 ~ 21471826 (-) True G684837
TU779877 lncRNA upstream 90180 21491290 ~ 21491572 (-) True G684863
XM_021611930.2 mRNA downstream 6735 21247152 ~ 21385603 (-) True LOC110529587
NM_001197208.2 mRNA downstream 151188 21231292 ~ 21241150 (-) True si:dkeyp-114g9.1
XM_021611928.2 mRNA downstream 195140 21189811 ~ 21197198 (-) False LOC110529586
XM_021611927.2 mRNA downstream 195146 21187530 ~ 21197192 (-) False LOC110529586
XR_005052832.1 mRNA downstream 195167 21187530 ~ 21197171 (-) False LOC110529586
XM_021611932.2 mRNA upstream 833 21401943 ~ 21406071 (-) False LOC110529589
XM_021611935.2 mRNA upstream 24509 21425619 ~ 21469294 (-) True LOC110529592
XM_021611936.2 mRNA upstream 98355 21499465 ~ 21504645 (-) False LOC110529593
XM_021611937.2 mRNA upstream 98355 21499465 ~ 21504647 (-) True LOC110529593
XM_021611330.2 mRNA upstream 138772 21539882 ~ 21545761 (-) False LOC110529205
TU776244 other downstream 2600201 18791230 ~ 18792137 (-) True G681659
TU773944 other downstream 4277810 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 4762079 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 4762079 16625090 ~ 16630259 (-) True G679210
TU773511 other downstream 4959324 16432621 ~ 16433014 (-) True G679087
TU779858 other upstream 77656 21478766 ~ 21479203 (-) True G684844
TU780899 other upstream 519317 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 519317 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 757920 22159030 ~ 22161042 (-) False G685953
TU783285 other upstream 2215797 23616907 ~ 23621246 (-) True LOC110529643

Expression Profile